Ağır akut solunum yolu yetersizliği sendromu coronavirus 2 (SARS-CoV-2): patogenez ve virus-konak etkileşimleri

Coronaviruslar son yirmi yıl içerisinde üç farklı dönemde salgına neden olarak küresel bir tehdit oluşturmuştur. İlk olarak 2003’te Ağır Akut Solunum Yolu Yetersizliği Sendromu (SARS-CoV) ortaya çıktı. Sonra 2012’de Ortadoğu Ağır Akut Solunum Yolu Yetersizliği Sendromu (MERS-CoV) tespit edildi. 2019 yılının sonlarında ise Ağır Akut Solunum Yolu Yetersizliği Sendromu Coronavirus 2 (SARS-CoV-2)’nin izole edildiği bildirildi. SARS-CoV ve MERS-CoV’a kıyasla çok daha şiddetli ve yaygın bir enfeksiyona neden olan SARS-CoV-2, aşı geliştirilinceye kadar küresel bir tehdit olmaya devam edecektir. SARS-CoV-2 salgınının hala devam etmesi nedeniyle, virus-konak etkileşimleri ve hastalığın patogenezi ile ilgili birçok konunun daha detaylı ele alınması gerekmektedir

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2): pathogenesis and virus-host interactions

Coronaviruses have posed a global threat in three differentperiods over the past two decades. Severe Acute Respiratory Failure Syndrome (SARS-CoV) was first revealed in 2003.Then, in 2012, Middle East Severe Acute Respiratory FailureSyndrome (MERS-CoV) was detected. In late 2019, it was reported that Coronavirus 2 (SARS-Cov-2) was isolated fromSevere Acute Respiratory Failure Syndrome. SARS-Cov-2,which causes a much more severe and common infectioncompared to SARS-Cov and MERS-Cov, remains a globalthreat until the vaccine is developed. Owing to the ongoingoutbreak of SARS-Cov-2, many facts regarding virus-hostinteractions and pathogenesis of disease, still needed to beaddressed in more detail.

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  • Baig AM, Khaleeq A, Ali U, Syeda H, 2020. Evidence of the COVID-19 virus targeting the CNS: tissue distribution, host– virus interaction, and proposed neurotropic mechanisms. ACS Chem Neurosci, 11(7), 995-8.
  • Barretto N, Jukneliene D, Ratia K, Chen Z, et al., 2005. The papain-like protease of severe acute respiratory syndrome coronavirus has deubiquitinating activity. J Virol, 79(24), 15189-98.
  • Bhayana R, Som A, Li MD, Carey DE, et al., 2020. Abdominal imaging findings in COVID-19: preliminary observations. Radiology, 297(1), E207-215.
  • Chan CM, Ma CW, Chan WY, Chan HY, 2007. The SARScoronavirus membrane protein induces apoptosis through modulating the Akt survival pathway. Arch Biochem Biophys, 459(2), 197-207.
  • Cheng VC, Lau SK, Woo PC, Yuen KY, 2007. Severe acute respiratory syndrome coronavirus as an agent of emerging and reemerging infection. Clin Microbiol Rev, 20(4), 660-94.
  • Connor RF, Roper RL, 2007. Unique SARS-CoV protein nsp1: bioinformatics, biochemistry and potential effects on virulence. Trends Microbiol,15(2), 51-3.
  • CSG of the International, 2020. The species Severe acute respiratory syndrome-related coronavirus: classifying 2019- nCoV and naming it SARS-CoV-2. Nat Microbiol, 5(4), 536- 544.
  • Cui J, Li F, Shi ZL, 2019. Origin and evolution of pathogenic coronaviruses. Nat Rev Microbiol, 17(3), 181-92.
  • Das G, Mukherjee N, Ghosh S, 2020. Neurological insights of COVID-19 pandemic. ACS Chem Neurosci, 11(9),1206-9.
  • De Wit E, Van Doremalen N, Falzarano D, Munster VJ, 2016. SARS and MERS: recent insights into emerging coronaviruses. Nat Rev Microbiol, 14(8), 523-534.
  • Diao B, Feng Z, Wang C, Wang H, et al., 2020. Human kidney is a target for novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection. MedRxiv, Jan 1, Article in press.
  • Feng Z, Diao B, Wang R, Wang G, et al., 2020. The novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) directly decimates human spleens and lymph nodes. MedRxiv, Jan 1, Article in press.
  • Guo YR, Cao QD, Hong ZS, Tan YY, et al., 2020. The origin, transmission and clinical therapies on coronavirus disease 2019 (COVID-19) outbreak–an update on the status. Mil Med Res, 7(11), 1-10.
  • Hoehl S, Berger A, Kortenbusch M, Cinatl J, et al., 2020. Evidence of SARS-CoV-2 Infection in Returning Travelers from Wuhan, China. N Engl J Med, 382(13), 1278-1280.
  • Holshue ML, DeBolt C, Lindquist S, Lofy KH, et al., 2020. First case of 2019 novel coronavirus in the United States. N Engl J Med, Jan 31, 382(10), 929-936.
  • Huang C, Wang Y, Li X, Ren L, et al., 2020. Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China. The lancet, 395(10223), 497-506.
  • Ji W, Wang W, Zhao X, Zai J, et al., 2020. Cross‐species transmission of the newly identified coronavirus 2019‐nCoV. J Med Virol, 92(4), 433-440.
  • Kanzawa N, Nishigaki K, Hayashi T, Ishii Y, et al., 2006. Augmentation of chemokine production by severe acute respiratory syndrome coronavirus 3a/X1 and 7a/X4 proteins through NF-κB activation. FEBS Lett, 580(30), 6807-12.
  • Khan S, Fielding BC, Tan TH, Chou CF, et al., 2006. Over-expression of severe acute respiratory syndrome coronavirus 3b protein induces both apoptosis and necrosis in Vero E6 cells. Virus Res, 122(1-2), 20-27.
  • Kolaczkowska E, Kubes P, 2013. Neutrophil recruitment and function in health and inflammation. Nat Rev Immunol, 13(3), 159-175.
  • Kopecky-Bromberg SA, Martínez-Sobrido L, Frieman M, Baric RA, et al., 2007. Severe acute respiratory syndrome coronavirus open reading frame (ORF) 3b, ORF 6, and nucleocapsid proteins function as interferon antagonists. J Virol, 81(2), 548-57.
  • Lam TT, Jia N, Zhang YW, Shum MH, et al., 2020. Identifying SARS-CoV-2-related coronaviruses in Malayan pangolins. Nature, 583, 282–285.
  • Law AH, Lee DC, Cheung BK, Yim HC, et al., 2007.Role for nonstructural protein 1 of severe acute respiratory syndrome coronavirus in chemokine dysregulation. J Virol, 81(1), 416-22.
  • Leo YS, Chen M, Heng BH, 2003. Centers for Disease Control and Prevention. Severe acute respiratory syndrome—Singapore 2003. MMWR, 52, 405-411.
  • Li J, Guo M, Tian X, Wang X, et al., 2020. Virus-host interactome and proteomic survey of PBMCs from COVID-19 patients reveal potential virulence factors influencing SARSCoV-2 pathogenesis. BioRxiv, Article in press.
  • Li Q, Wang L, Dong C, Che Y, et al., 2005. The interaction of the SARS coronavirus non-structural protein 10 with the cellular oxido-reductase system causes an extensive cytopathic effect. J Clin Virol, 34(2), 133-139.
  • Li Q, Guan X, Wu P, Wang X, et al., 2020. Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus–Infected Pneumonia. N Engl J Med, 382(13), 1199-1207.
  • Lin CW, Lin KH, Hsieh TH, Shiu SY, et al., 2006. Severe acute respiratory syndrome coronavirus 3C-like protease-induced apoptosis. FEMS Immunol Med Microbiol, 46(3), 375- 80.
  • Mahmoud IS, Jarrar YB, Alshaer W, Ismail S, 2020. SARSCoV-2 entry in host cells-multiple targets for treatment and prevention. Biochimie, 175, 93-98.
  • Peleg Y, Kudose S, D’Agati V, Siddall E, et al., 2020. Acute kidney injury due to collapsing glomerulopathy following COVID-19 infection. Kidney Int Rep, 5(6), 940-945.
  • Reichard RR, Kashani KB, Boire NA, Constantopoulos E, et al., 2020. Neuropathology of COVID-19: a spectrum of vascular and acute disseminated encephalomyelitis (ADEM)- like pathology. Acta Neuropathol, 140, 1-6.
  • Robson B, 2020. Bioinformatics studies on a function of the SARS-CoV-2 spike glycoprotein as the binding of host sialic acid glycans. Comput Biol Med, 122 (103849), 1-18.
  • Rothan HA, Byrareddy SN, 2020. The epidemiology and pathogenesis of coronavirus disease (COVID-19) outbreak. J Autoimmun, 109(102433), 1-4.
  • Sangith N, 2020. Unique fibrinogen-binding motifs in the nucleocapsid phosphoprotein of SARS-CoV-2: Potential implications in host-pathogen interactions. Med Hypotheses, 144(110030), 1-3.
  • Sigrist CJ, Bridge A, Le Mercier P, 2020. A potential role for integrins in host cell entry by SARS-CoV-2. Antiviral Res, 177 (104759), 1-4.
  • Soufi GJ, Hekmatnia A, Nasrollahzadeh M, Shafiei N, et al., 2020. SARS-CoV-2 (COVID-19): New Discoveries and Current Challenges. Appl Sci, 10(10), 3641, 1-31.
  • Suchonwanit P, Leerunyakul K, Kositkuljorn C, 2020. Cutaneous manifestations in COVID-19: Lessons learned from current evidence. J Am Acad Dermatol, 83(1), E57-60.
  • Tabary M, Khanmohammadi S, Araghi F, Dadkhahfar S, et al., 2020. Pathologic Features of COVID-19: A Concise Review. Pathol Res Pract, 216(9), 153097.
  • Tan YJ, Fielding BC, Goh PY, Shen S, et al., 2004. Overexpression of 7a, a protein specifically encoded by the severe acute respiratory syndrome coronavirus, induces apoptosis via a caspase-dependent pathway. J Virol, 78(24), 14043-14047.
  • Tan YJ, Tham PY, Chan DZ, Chou CF, et al., 2005. The severe acute respiratory syndrome coronavirus 3a protein upregulates expression of fibrinogen in lung epithelial cells. J Virol, 79(15), 10083-10087.
  • Wan Y, Shang J, Graham R, Baric RS, et al., 2020. Receptor recognition by the novel coronavirus from Wuhan: an analysis based on decade-long structural studies of SARS coronavirus. J Virol, 94(7), 1-9.
  • Wang C, Xie J, Zhao L, Fei X, et al., 2020. Aveolar macrophage activation and cytokine storm in the pathogenesis of severe COVID-19. Research Square, Article in press.
  • Wrapp D, Wang N, Corbett KS, Goldsmith JA, et al., 2020. Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation. Science, 367(6483), 1260-1263.
  • Wu F, Zhao S, Yu B, Chen YM, et al., 2020. A new coronavirus associated with human respiratory disease in China. Nature, 579(7798), 265-269.
  • Wu KE, Fazal FM, Parker KR, Zou J, et al., 2020. RNA-GPS predicts SARS-CoV-2 RNA residency to host mitochondria and nucleolus. Cell Syst, 11(1), 102-108.
  • Xiao F, Tang M, Zheng X, Liu Y, et al., 2020. Evidence for gastrointestinal infection of SARS-CoV-2. Gastroenterology, 158(6), 1831-1833.
  • Xu X, Chang XN, Pan HX, Su H, et al., 2020. Pathological changes of the spleen in ten patients with new coronavirus infection by minimally invasive autopsies. Chinese J Pathol, 49, E014.
  • Xu Z, Shi L, Wang Y, Zhang J, et al., 2020. Pathological findings of COVID-19 associated with acute respiratory distress syndrome. Lancet Respir Med, 8(4), 420-422.
  • Varatharaj A, Thomas N, Ellul MA, Davies NW, et al., 2020. Neurological and neuropsychiatric complications of COVID-19 in 153 patients: a UK-wide surveillance study. Lancet Psychiat, 7(10), 875-882.
  • Yang Y, Xiong Z, Zhang S, Yan Y, et al., 2005. Bcl-xL inhibits T-cell apoptosis induced by expression of SARS coronavirus E protein in the absence of growth factors. Biochem J, 392(1), 135-43.
  • Zaki AM, Van Boheemen S, Bestebroer TM, Osterhaus AD, et al., 2012. Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia. N Engl J Med, 367(19), 1814- 1820.
  • Zhu N, Zhang D, Wang W, Li X, et al., 2020. A Novel Coronavirus from Patients with Pneumonia in China, 2019. N Engl J Med, 382(8), 727-733.