Rumen mikrobiyal ekosistemi içerisinde anaerobik funguslar

Rumen bakteri, arkea, protozoa, fungus ve bakteriyofajlardan oluşan kompleks bir mikrobiyal ekosisteme sahiptir. Rumende besin maddelerinin fermantasyonunu gerçekleştiren rumen mikroorganizmaları içerisinde anaerobik funguslar 6 cins altında 20 tür ile temsil edilmektedir. Anaerobik funguslar, monosentrik ve polisentrik olmak üzere iki farklı üreme şekline sahip olup vejetatif tallusları küresel veya filamentli rizoid içerebilir. Sahip oldukları anaerobik yaşam tarzı ve iki aşamalı yaşam döngüsü nedeniyle sınıflandırmadaki yeri günümüze kadar tartışılmış ve son yapılan çalışmalar neticesinde içerisinde sadece anaerobik rumen funguslarının bulunduğu Neocallimastigomycota adında yeni bir filum oluşturulmuştur. Zorunlu anaerob olan bu fungusların herbivorlar arasında nasıl transfer oldukları henüz tam olarak aydınlatılamamıştır. Bu çalışmada anaerobik rumen funguslarının taksonomisi, yaşam döngüsü, herbivorlar arasındaki transferleri ile diğer rumen mikroorganizmalarıyla etkileşimi üzerine olan genel bir bakış sunulmuştur.

Anaerobic fungi in the rumen microbial ecosystem

Rumen has a complex microbial ecosystem which contains bacteria, archea, protozoa, fungi, and bacteriophage. Plant material that enters rumen was fermented by rumen microorganisms and anaerobic fungi, which are a member of rumen microorganisms, were resembled with 20 species belongs to 6 genera. Anaerobic fungi have two reproduction types as monocentric and polycentric growth. Vegetative thalluses could contain spherical or mycelial rhizoidal system. Classification of anaerobic fungi has remained controversial because of anaerobic life style and life cycle with two stages. Recent studies have separated the rumen fungi in a new phylum Neocallimastigomycota. Transfer of strictly anaerobic fungi between herbivores has not been clarified yet. This review was focused on the investigations about taxonomy and life cycle of rumen fungi, transfer between herbivores and interactions with the other rumen microorganisms.

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  • Akin, D.E. and Rigsby, L.L. 1987. Mixed fungal populations and lignocellulose tissue degradation in the bovine rumen. Appl. Environ. Microbiol. 53: 1987–1995.
  • Barr, D.J.S., 1988. How modern systematic relates to the rumen fungi. BioSystems 21: 351- 356.
  • Barr, D.J.S., Kudo, H., Jakober, K.D. and Cheng, K.-J., 1989. Morphology and development of rumen fungi: Neocallimastix sp. Piromyces communis and Orpinomyces bovis gen. nov., sp. nov. Can. J. Bot. 67: 2815-2824.
  • Barr, D.J.S., Yanke, L.J., Bae, H.D., McAllister, T.A. and Cheng, K.-J., 1995. Contributions on the morphology and taxonomy of some rumen fungi from Canada. Mycotaxon LIV: 203-214.
  • Bauchop, T. and Mounfort, D.O., 1981. Cellulose fermentation by a rumen anaerobic fungus in both the absence and presence of rumen methanogens. Appl. Environ. Microbiol. 42: 1103-1110.
  • Bauchop, T., 1983. The gut anaerobic fungi: Colonizers of dietry fibre. In Fibre in Human and Animal Nutrition. (edt. G. Wallace and L. Bell). Royal Society of New Zealand, Wellington, p. 143-148.
  • Bell, A.A. and Wheeler, M.H., 1986. Biosynthesis and functions of fungal melanins. Ann. Rev. Phytopathol. 24: 411-451.
  • Bernalier, A., Fonty, G. and Gouet, Ph., 1991. Cellulase degradation by two rumen anaerobic fungi in monoculture or in coculture with rumen bacteria. Anim. Feed Sci. Technol. 32: 131-136.
  • Bernalier, A., Fonty, G. and Gouet, Ph. 1992. Degradation and fermentation of cellulose by the rumen anaerobic fungi in axenic cultures or in association with cellulolytic bacteria. Curr. Microbiol. 25: 143-149.
  • Bernalier, A., Fonty, G., Bonnemoy, F. and Gouet, Ph., 1993. Inhibition of cellulolytic activity of Neocallimastix frontalis by Ruminococcus flavefaciens. J. Gen. Microbiol. 139: 873-880.
  • Billon-Grand, G., Fio, J.B., Breton, A., Bruyere, A. and Oulhaj, Z., 1991. DNA of some anaerobic fungi: G+C content determination. FEMS Microbiol. Lett. 82: 267-270.
  • Braune, R., 1913. Untersuchungen uber die in Wiederkauermayen vorkommenden Protozoen. Arch. Protistenk. 32: 111-170.
  • Brookman, J.L., Ozkose, E., Rogers, S., Trinci, A.P.J. and Theodorou, M.K., 2000a. Identification of spores in the polycentric anaerobic gut fungi which enhance their ability to survive. FEMS Microbiol. Ecol. 31: 261-267.
  • Brookman, J.L., Ozkose, E., Rogers, S., Trinci, A.P.J. and Theodorou, M.K., 2000b. Identification of spores in the polycentric anaerobic gut fungi which enhance their ability to survive. FEMS Microbiol. Ecol. 31: 261-267.
  • Brownlee, A.G., 1989. Remarkably AT-rich genomic DNA from the anaerobic fungus Neocallimastix. Nucleic Acids Res. 4: 1327-1335.
  • Chen, Y.C., Hseu, R.S. and Chien, C.Y., 2002. Piromyces polycephalus (Neocallimastigaceae), a new rumen fungus. Nowa Hedwigia 75: 409-414.
  • Chen, Y.C, Tsai, S.D. and Cheng, H.L., 2007. Caecomyces sympodialis sp. nov., a new rumen fungus isolated from Bos indicus. Mycologia, 99(1): 125-130.
  • Çömlekçioğlu, U., Akyol, İ., Kar, B., Özköse, E. ve Ekinci, M.S., 2008. Anaerobik rumen funguslarının izolasyonu, tanımlanması ve kültür koleksiyonunun oluşturulması. Hayvansal Üretim, 49(2): 29-35.
  • Çömlekçioğlu, 2009. Rumen funguslarının izolasyonu ve bu funguslara ait enzim genleri üzerine moleküler çalışmalar. Kahramanmaraş Sütçü İmam Üniversitesi, Doktora Tezi.
  • Davies, D.R., Theodorou, M.K., Lawrence, M.I. and Trinci, A.P.J., 1993a. Distribution of anaerobic fungi in the digestive tract of cattle and their survival in faeces. J. Gen. Microbiol. 139: 1395-1400.
  • Davies, D.R., Theodorou, M.K., Brooks, A.E. and Trinci, A.P.J., 1993b. Influence of drying on the survival of anaerobic fungi in rumen digesta and faeces of cattle. FEMS Microbiol. Lett. 106: 59-64.
  • Dehority, B.A. and Tirabasso, P.A., 2000. Antibiosis between ruminal bacteria and ruminal fungi. Appl. Environ. Microbiol., 66(7): 2921–2927
  • Denman, S.E. and McSweeney, C.S, 2006. Development of a real-time PCR assay for monitoring anaerobic fungal and cellulolytic bacterial populations within the rumen. FEMS Microbiol Ecol. 58: 572–582.
  • Dore, J. and Stahl, D. A., 1991. Phylogeny of anaerobic rumen Chytridiomycetes inferred from small subunit ribosomal RNA sequence comparison. Can. J. Bot. 69: 1964-1971.
  • Flint, H.J., 1994. Molecular genetics of obligate anaerobes from the rumen. FEMS Microbiol. Lett. 121, 259-268.
  • Foster, J.W. 1949. Chemical activities of the fungi. Academic Press, New York.
  • Gordon, G.L.R. and Phillips, M.W., 1998. The role of anaerobic gut fungi in ruminants. Nutr. Res. Rev. 11: 133-168.
  • Heath, I.B., Bauchop, T. and Skipp, R.A., 1983. Assignment of the rumen anaerobe Neocallimastix frontalis to the Spizellomycetales (Chytridiomycetes) on the basis of its polyflagellate zoospore ultrastructure. Can. J. Bot. 61: 295-307.
  • Heath, I.B., Kaminskyj, S.G.W. and Bauchop, T., 1986. Basal body loss during fungal zoospore encystment: evidence against centriole autonomy. J. Cell. Sci. 83: 135-140.
  • Heath, I.B., 1988. Recommendation for future taxonomic studies of gut fungi. Biosystems. 21: 417-418.
  • Hibbett, D.S., Binder, M., Bischoff, J.F., Blackwell, M., Cannon, P.F., Eriksson, O.E., Huhndorf, S., James, T., Kirk, P.M., Lücking, R., Lumbsch, H.T., Lutzoni, F., Matheny, P.B., Mclaughlin, D.J., Powell, M.J., Redhead, S., Schoch, C.L., Spatafora, J.W., Stalpers, J.A., Vilgalys, R., Aime, M.C., Aptroot, A., Bauer, R., Begerow, D., Benny, G.L., Castlebury, L.A., Crous, P.W., Dai, Y.-C., Gams, W., Geiser, D.M., Griffith, G.W., Gueidan, C., Hawksworth, D.L., Hestmark, G., Hosaka, K., Humber, R.A., Hyde, K.D., Ironside, J.E., Kõljalg, U., Kurtzman, C.P., Larsson, K.-H., Lichtwardt, R., Longcore, J., Miadlikowska, J., Miller, A., Moncalvo, J.-M., Mozley- Standridge, S., Oberwinkler, F., Parmasto, E., Reeb, V., Rogers, J.D., Roux, C., Ryvarden, L., Sampaio, J.P., Schüßler, A., Sugiyama, J., Thorn, R.G., Tibell, L., Untereiner, W.A., Walker, C., Wang, Z., Weir, A., Weiss, M., White, M.M., Winka, K., Yao, Y.-J. and Zhang, N. 2007. A higher-level phylogenetic classification of the Fungi. Mycol. Res. 111: 509-547.
  • Ho, Y.W., Abdullah, N. and Jalaludin, S., 1988. Penetrating structures of anaerobic rumen fungi in cattle and swamp buffalo. J. Gen. Microbiol. 134: 177-182.
  • Ho, Y.W., and Bauchop, T., 1991. Morphology of three polycentric rumen fungi and a description of the procedure for the induction of zoosporogenesis and release of zoospores in culture. J. Gen. Microbiol. 137: 213-217.
  • Ho, Y. W., Khoo, I. Y. S., Tan, S. G., Abdullah, N., Jalaludin, S. and Kudo, H., 1994a. Isoenzyme analysis of anaerobic rumen fungi and their relationship to aerobic chytrids. Microbiology 140: 1495-1504.
  • Ho, Y.W., Abdullah, N. and Jalaludin, S., 1994b. Orpinomyces intercalaris, a new species of polycentric anaerobic rumen fungus from cattle. Mycotaxon. 50: 139-150.
  • Ho, Y.W. and Barr, D.J.S., 1995. Classification of anaerobic fungi from herbivores with emphasis on rumen fungi from Malaysia. Mycol. 87: 655-677.
  • Ho, Y.W., Wong, M.V.L., Abdullah, N., Kudo, H. and Jalaludin, S., 1996. Fermentation activities of some new species of anaerobic rumen fungi from Malaysia. J. Gen. Microbiol. 42: 51-59.
  • Itabashi, H. 2004. Recent topics in rumen microbiology with particular reference to animal prodution in Japan. Microbes Environment, 19(4): 270-275.
  • James, T.Y., Porter, D., Leander, C. A., Vilgalys, R. and Longcore, J.E., 2000. Molecular phylogenetics of the chytridiomycota supports the utility of ultrastructural data in chytrid systematics. Can. J. Bot. 78: 336-350.
  • James, T.Y., Letcher, P.M., Longcore, J.E., Mozley-Standridge, S.E., Porter, D., Powell, M.J., Griffith, G.W. and Vilgalys, R., 2006. A molecular phylogeny of the flagellated fungi (Chytridiomycota) and a proposal for a new phylum (Blastocladiomycota). Mycologia 98: 860–871.
  • Joblin, K. N., 1990. Bacterial and protozoal interactions with ruminal fungi. Microbial and plant opputinities to improve lignocellulose utilization by ruminants. Ed. D.E. Akin, L.G. Ljungdahl, J.R. Wilson, P.J. Harris. Elsevier Science Publishing Co: 311-324.
  • Joblin, K.N. and Naylor, G.E., 1994. Effects of Butyrivibrio fibrisolvens on gut anaerobic fungi. Proc. Nutr. Soc. 3: 171.
  • Kamra, D.N. 2005. Rumen microbial ecosystem. Current Science, 89 (1): 124-135.
  • Kopecny, J., Hodrova, B. and Stewart, C.S., 1996. The isolation and characterization of a rumen chitinolytic bacterium. Lett. Appl. Microbiol. 23: 195-198.
  • Koppova, I., Novotna, Z., Strosova, L. and Fliegerova, K., 2008. Analysis of fatty acid composition of anaerobic rumen fungi. Folia Microbiol. 53: 217-220.
  • Lee, S.S., Ha, J.K. and Cheng, K.J., 2001. The effects of sequential inoculation of mixed rumen protozoa on the degradation of orchard grass cell walls by anaerobic fungus Anaeromyces mucronatus 543. Can. J.Microbiol. 47: 754-760.
  • Li, J. and Heath, I.B., 1992. The phylogenetic relationships of the anaerobic chytridiomycetous gut fungi (Neocallimasticaceae) and the chytridiomycota. I. Cladistic analysis of rRNA sequences. Can. J. Bot. 70: 1738-1746.
  • Li, J., Heath, I.B. and Packer, L., 1993. The phylogenetic relationships of the anaerobic chytridiomycetous gut fungi (Neocallimasticaceae) and the chytridiomycota. II. Cladistic analysis of structural data and description of the Neocallimasticales ord. nov. Can. J. Bot. 71: 393-407.
  • Liebetanz, E., 1910. Die parasitichen protozoen des wiederkauermagens. Arch. Protistenk. 19:19-80.
  • Lockhart, R.J., Van Dyke, M.I., Beadle, I.R., Humphreys, P. and McCarthy, A.J., 2006. Molecular biological detection of anaerobic gut fungi (Neocallimastigales) from landfill sites. Appl. Environ. Microbiol. 72(8): 5659-5661.
  • Lowe, S.E., Theodorou, M.K. and Trinci, A.P.J., 1987. Isolation of anaerobic fungi from saliva and faeces of sheep. J. Gen. Microbiol. 133: 1829-1834.
  • Marvin-Sikkema, F.D., Rees, E., Kraak, M.N., Gottschal, J.C. and Prins, R.A., 1993. Influence of metronidazole, CO, CO2, and methanogens on the fermentative metabolism of the anaerobic fungus Neocallimastix sp. strain L2. Appl. Environ. Microbiol. 59(8): 2678-2683.
  • McGranaghan, P., Davies, J.C., Griffith, G.W., Davies, D.R. and Theodorou, M.K., 1999. The survival of anaerobic fungi in cattle faeces. FEMS Microbiol. Ecol. 29: 293-300.
  • Milne, A., Theodorou, M.K., Jordan, M.G.J., King-Spooner, C. and Trinci, A.P.J., 1989. Survival of anaerobic fungi in faeces, in saliva and in pure culture. Exp. Mycol. 13: 27-37.
  • Munn, E.A., Orpin, C.G. and Hall, F.J., 1981. Ultrastructural studies of the free zoospore of the rumen phycomycete Neocallimastix frontalis. J. Gen. Microbiol. 125: 311-323.
  • Munn, E.A., 1994. The ultrastructure of anaerobic fungi. Anaerobic Fungi, Ed. Mountfort D.O., Orpin C.G., Marcel Dekker, Inc., New York: 47-105.
  • Nielsen, B.B., Zhu, W.Y., Trinci, A.P.J. and Theodorou, M.K., 1995. Demonstration of zoosporangia of anaerobic fungi on plant residues recovered from faeces of cattle. Mycol. Res. 99(4): 471-474.
  • Orpin, C.G., 1974. The rumen flagellates Callimastix frontalis and Monas communiszoospores of phycomycete fungi. J. Appl. Bacteriol. 37: IX-X.
  • Orpin, C.G., 1975. Studies on the rumen flagellate Neocallimastix frontalis. J. Gen. Microbiol. 91:249-262.
  • Orpin, C.G., 1977a. The occurrence of chitin in the cell walls of rumen organisms Neocallimastix frontalis, Piromonas communis, and Sphaeromonas communis. J. Gen. Microbiol. 99: 215-218.
  • Orpin, C.G., 1977b. On the induction of zoosporogenesis in the rumen phycomycetes Neocallimastix frontalis, Piromonas communis and Sphaeromonas communis. J. Gen. Microbiol. 101: 181-189.
  • Orpin, C.G., 1977c. Studies on the defaunation of the ovine rumen using dioctyl sodium sulphosuccinate. J. Appl. Bacteriol. 43: 309-318.
  • Orpin, C.G. and Greenwood, Y., 1986. The role of haems and related compounds in the nutrition and zoosporogenesis of the rumen chytridiomycete Neocallimastix frontalis H8. J. Gen microbiol. 132: 2179-2185.
  • Orpin, C.G., 1988. Nutrition and biochemistry of anaerobic Chytridiomycetes. Biosystems, 21: 365-370.
  • Orpin, C.G., 1994. Anaerobic fungi: taxonomy, biology and distribution in nature. The Anaerobic Fungi. (edt. C.G. Orpin ve D.O. Mountfort). Marcel Dekker, New York: 1- 47.
  • Ozkose, E., 2001. Morphology and molecular ecology of rumen fungi. PhD thesis, University of Wales, Aberystvyth, UK
  • Ozkose, E., Thomas, B.J., Davies, D.R., Griffith, G.W. and Theodorou, M.K., 2001. Cyllamyces aberensis gen. nov. sp. nov., a new anaerobic gut fungus with branched sporangiophores isolated from cattle. Can. J. Bot. 79: 666-673.
  • Özköse, E., Ekinci, M.S. ve Akyol, İ., 2003. Biyoteknolojik Potansiyel Olarak Anaerobik Funguslar: Kültüre Alınmaları ve Morfolojileri. KSU Fen ve Mühendislik Dergisi, 6(1): 129-139.
  • Rees, E.M.R., Lloyd, D. and Williams, A.G., 1995. The effects of co-cultivation with the acetogen Acetitomaculum ruminis on the fermentative metabolism of the rumen fungi Neocallimastix patriciarum and Neocallimastix strain L2. FEMS Microbiol. Lett., 133, 175-180.
  • Richardson, A.J., Stewart, C.S. and Gooday, G.W., 1998. Attachment to cellulose and maturation of attached thalli in the anaerobic rumen fungus Neocallimastix frontalis strain RE1. Mycol. Res. 102: 1119-1125.
  • Sijtsma, L. and Tan, B., 1996. Degradation of perennial ryegrass leaf and stem cell walls by the anaerobic fungus Neocallimastix sp. strain CS3b. Appl. Environ. Microbiol. 62(4): 1437–1440.
  • Stahl, P.D. and Klug, M.J., 1996. Characterization and differentiation of filamentous fungi based on fatty acid composition. Appl. Environ. Microbiol. 62(11): 4136-4146.
  • Trinci, A.P.J., Lowe, S.E., Milne, A. and Theodorou, M.K., 1988. Growth and survival of rumen fungi. Biosystems, 21: 357-363.
  • Webb, J. and Theodorou, M.K., 1988. A rumen anaerobic fungus of the genus Neocallimastix: ultrastructure of the polyflagellate zoospore and young thallus. BioSystems 21: 393-401.
  • Weimer, J.P., 1998. Manipulating ruminal fermentation: A microbial ecological perspective. J. Animal Science, 76: 3114–3122.
  • Williams, A.G., Withers, S.E. and Joblin, K.N., 1991. Xylanolysis by cocultures of the rumen fungus Neocallimastix frontalis and ruminal bacteria. Lett. Appl. Microbiol. 12: 232-235.
  • Wubah, D.A., Fuller, M.S. and Akin, D.E., 1991a. Resistant body formation in Neocallimastix sp., an anaerobic fungus from the rumen of the cow. Mycologia 83: 40-47.
  • Wubah, D.A., Fuller, M.S. and Akin, D.E., 1991b. Isolation of monocentric and polycentric fungi from the rumen and feces of cows in Georgia. Can. J. Bot. 69: 1232-1236.
  • Yarlett, N.C., Yarlett, N., Orpin, C.G. and Lloyd, D., 1986. Cryopreservation of the anaerobic fungus Neocallimastix patriciarum. Lett. Appl. Microbiol. 3: 1-3.
Uludağ Üniversitesi Ziraat Fakültesi Dergisi-Cover
  • ISSN: 1301-3165
  • Yayın Aralığı: Yılda 2 Sayı
  • Başlangıç: 1982
  • Yayıncı: Bursa Uludağ Üniversitesi Ziraat Fakültesi
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