Türkiye’den 12 Yerli, Karagül, Karacabey Merinosu ve Anadolu Yaban Koyununda (Ovis gmelinii anatolica) Y-Kromozom Polimorfizmleri
Bu çalışmada, Anadolu’dan yerli evcil koyun (Ovis aries) ırklarından 13 ırk ile kökeni Avrupa’dan olan Bandırma Merinosu koyun ırkı ve Anadolu Yaban Koyunu (Ovis gmelinii anatolica)’na ait olmak üzere toplam 182 erkek birey materyal olarak kullanılmıştır. Y kromozomunda bulunan SRY 5’promotor bölgesi ve Y kromozomuna özel bir mikrosatellit olan SRYM18 bölgeleri DNA dizi analizi yöntemleriyle incelenmiştir. SRY bölgesine ait analizlerde tüm bireylerde SNP A-oY1 alleline rastlanmıştır. SRYM18 mikrosatellit bölgesinde ise 4 farklı allel görülmüş ve toplamda 4 farklı babasal soy, haplotip, tespit edilmiştir. Yerli Anadolu ırklarında (n=143), H6 haplotipi (%80.41), H4 haplotipi (%9.09), H8 haplotipi (%8.40) ve H12 haplotipi (%2.1) belirlenmiştir. Ovis gmelinii anatolica’nın 16 bireyinde de sadece H6 haplotipi gözlenmiştir. Evcil koyunlar için haplotip frekanslarına dayalı FST değerleri hesaplanmış ve en yüksek FST değeri Karagül-Kıvırcık ve Karagül-Ovis gmelinii anatolica arasında FST değeri 0.43202 (P
Y-Chromosome Polymorphisms in 12 Native, Karagül, Karacabey Merino Breeds from Turkey and Anatolian Mouflon (Ovis gmelinii anatolica)
In this study, 182 male animals from 12 native sheep breeds, as well as Karacabey Merino and Karagül breeds of Anatolia, wild sheep AnatolianMouflon (Ovis gmelinii anatolica) were used as the study material. Based on SRY and SRYM18 regions on the Y-chromosome, haplotypes of thepopulations were analyzed using DNA sequence analyses. The SRY region, A-oY1 allele was observed in all of the individuals studied. On the other hand,four different alleles corresponding to four Y-chromosome haplotypes were detected at the SRYM18 microsatellite region. Among native Anatolianbreeds (n=143), H6 haplotype (80.41%), H4 haplotype (9.09%), H8 haplotype (8.40%) and H12 haplotype (2.1%) were identified. H6 haplotype wasobserved in all 16 individuals of Ovis gmelinii anatolica. Pairwise FST values based on haplotype frequencies were calculated for domestic sheep, andthe highest FST value was observed between Karagül and Kıvırcık along with Karagül and Ovis gmelinii anatolica with pairwise FST value of 0.43202(P
___
- Roux JP: Türklerin Tarihi: Büyük Okyans’tan Akdeniz’e İki Bin Yıl. 5.
Baskı. AD Yayıncılık, İstanbul, 1997.
- Toynbee AJ: The Western Question in Greece and Turkey. A Study in
the Contact of Civilizations, 3rd ed., New York: Howard fertig, Inc; 1970.
- Berkman CC, Dinç H, Sekeryapan C, Togan I: Alu insertion
polymorphisms and an assessment of the genetic contribution of Central
Asia to Anatolia with respect to the Balkans. Am J Phys Anthropol, 136, 11-
18, 2008. DOI: 10.1002/ajpa.20772
- Ocak E, Bingöl M, Gökdal Ö: Van yöresinde yetiştirilen Norduz
koyunlarının süt bileşimi ve süt verim özellikleri. YYÜ Tar Bil Derg, 19, 85-
89, 2009.
- Ferencakovic M, Curik I, Pérez-Pardal L, Royo LJ, Cubric-Curik V,
Fernández I, Álvarez I, Kostelic A, Sprem N, Krapinec K, Goyache F:
Mitochondrial DNA and Y-chromosome diversity in East Adriatic sheep.
Anim Genet, 44, 184-192, 2013. DOI: 10.1111/j.1365-2052.2012.02393.x
- Wang Y, Xu L, Yan W, Li S, Wang J, Liu X, Hu J, Luo Y: Y chromosomal
haplotype characteristics of domestic sheep (Ovis aries) in China. Gene,
565, 242-245, 2015. DOI: 10.1016/j.gene.2015.04.015
- Kdidi S, Yahyaoui MH, García-Manrique B, Sarto P, BEN SASSI M,
Khorchani T, Calvo JH: Y chromosome haplotype characterization
of Tunisian sheep breeds. Turk J Vet Anim Sci, 39, 333-337, 2015. DOI:
10.3906/vet-1405-95
- Zhang M, Peng WF, Yang GL, Lv FH, Liu MJ, Li WR, Liu YG, Li JQ,
Wang F, Shen ZQ, Zhao SG, Hehua E, Marzanov N, Murawski M,
Kantanen J, Li MH: Y-chromosome haplotype diversity of domestic
sheep (Ovis aries) in northern Eurasia. Anim Genet, 45, 903-907, 2014. DOI:
10.1111/age.12214
- Ouna AB, Kijas JW, Meadows JRS, Limo M, Hanotte O, Mburu D:
Analysis of genetic diversity and relationship between African male
sheep using two Y chromosome specific markers. In, Proceedings of the
30th International Conference on Animal Genetics on Biodiversity, the future
pass through preservation. Belo Horizonte, Brazil: Colegio Brasileiro de
Reproducao Animal, pp.20-25, 2006.
- TAGEM: Domestic Animal Genetic Resources in Turkey. Republic of
Turkey Ministry of Food Agriculture and Livestock General Directorate of
Agricultural Research and Policy, Ankara, 2011.
- Excoffier L, Laval G, Schneider S: Arlequin (ver. 3.0): An integrated
software package for population genetics data analysis. Evol Bioinform
Online, 1, 47-50, 2005.
- Bandelt J, Forster P, Rohl A: Median-joining networks for inferring
intraspecific phylogenies. Mol Biol Evol, 16, 37-48, 1999. DOI: 10.1093/
oxfordjournals. molbev.a026036
- Hall TA: BioEdit: A user-friendly biological sequence alignment editor
and analysis program for Windows 95/98/NT. Nucleic Acids Symposium
Series, 41, 95-98, 1999.
- Thompson JD, Higgins DG, Gibson TJ: CLUSTAL-W: Improving
the sensitivity of progressive multiple sequence alignment through
sequence weighting, position-specific gap penalties and weight matrix
choice. Nucleic Acids Res, 22, 4673-4680, 1994.
- Sambrook J, Foritsch, EF, Maniatis T: Molecular Cloning: A
Laboratory Manual. New York, Cold Spring Harbor Laboratory, 1989.
- Kaya MA, Bunch TD, Konuk M: On Konya wild sheep, Ovis orientalis
anatolica, in the Bozdag protected area. Mammalia, 68, 229-232, 2004.
DOI: 10.1515/mamm.2004.022
- Ziaie H: Iran, Middle East. In, Shackleton DM (Ed): Wild Sheep and
Goats and Their Relatives: Status Survey and Conservation Action Plan for
Caprinae. Switzerland: World Conservation Union, pp.49-55, 1997.
- IUCN/SSC Caprine Specialist Group: Workshop on Caprinae
Taxonomy, Ankara, Turkey: pp.1-8, 1999.
- Chessa B, Pereira F, Arnaud F, Amorim A, Goyache F, Mainland
I, Kao RR, Pemberton JM, Beraldi D, Stear MJ, Alberti A, Pittau M,
Ianuzzi L, Banabazi MH, Kazwala RR, Zhang YP, Arranz JJ, Ali BA,
Wang Z, Uzun M, Dione MM, Olsaker I, Holm LE, Saarma U, Ahmad S,
Marzanov N, Eythorsdottin E, Holland M J, Ajmone-Marsan P, Bruford
MW, Kantanen J, Spencer TE, Palmarini M: Revealing the history of
sheep domestication using Retrovirus integrations. Science, 324, 532-536,
2009. DOI: 10.1126/science.1170587
- Peter C, Bruford M, Perez T, Dalamitra S, Hewitt G, Erhardt G,
the Econogene Consortium: Genetic diversity and subdivision of 57
European and Middle-Eastern sheep breeds. Anim Genet, 38, 37-44, 2007.
DOI: 10.1111/j.1365-2052. 2007.01561.x
- Lv FH, Peng WF, Yang J, Zhao YX, Li WR, Liu MJ, Ma YH, Zhao QJ,
Yang GL, Wang F, Li JQ, Liu YG, Shen ZQ, Zhao SG, Hehua E, Gorkhali
NA, Vahidi SMF, Muladno M, Naqvi AN, Tabell J, Isotouru T, Bruford
MW, Kantanen J, Han JL, Li MH: Mitogenomic metaanalysis identifies
two phases of migration in the history of eastern Eurasian sheep. Mol Biol
Evol, 32 (10): 2515-2533, 2015. DOI: 10.1093/molbev/msv139
- Demirci S, Koban Baştanlar E, Dağtas ND, Pişkin E, Engin A, Özer
F, Yüncü E, Doğan ŞA, Togan İ: Mitochondrial DNA diversity of modern,
ancient and wild sheep (Ovis gmelinii anatolica) from Turkey: New insights
on the evolutionary history of sheep. PLoS ONE, 8, e81952, 2013. DOI:
10.1371/journal.pone.0081952
- Tapio M, Ozerov M, Tapio I, Toro MA, Marzanov N, Cinkulov M,
Goncharenko G, Kiselyova T, Murawski M, Kantanen J: Microsatellitebased
genetic diversity and population structure of domestic sheep in
northern Eurasia. BMC Genet, 11 (76): 1-11, 2010. DOI: 10.1186/1471-
2156-11-76
- Meadows JRS, Cemal I, Karaca O, Gootwine E, Kijas JW: Five ovine
mitochondrial lineages identified from sheep breeds of the Near East.
Genetics, 175, 1371-1379, 2007. DOI: 10.1534/genetics.106.068353
- Bruford MW, Townsend SJ: Mitochondrial DNA diversity in modern
sheep: Implications for domestication. In, Zeder MA, Bradley DG,
Emshwiller E, Smith BD (Eds): Documenting Domestication: New Genetic
and Archaeological Paradigms. 307-317, CA, USA: University of California
Press, 2006.
- Pedrosa S, Uzun M, Arranz JJ, Gutierrez-Gil B, San Primitivo F,
Bayon Y: Evidence of three maternal lineages in Near Eastern sheep
supporting multiple domestication events. Proc Biol Sci, 272, 2211-2217,
2005. DOI: 10.1098/rspb.2005.3204
- Hiendleder S, Mainz K, Plante Y, Lewalski H: Analysis of
mitochondrial DNA indicates that domestic sheep are derived from two
different ancestral maternal sources: no evidence for contributions from
urial and argali sheep. J Hered, 89, 113-120, 1998.
- Wood NJ, Phua SH: Variation in the control region sequence of the
sheep mitochondrial genome. Anim Genet, 27, 25-33, 1996. DOI: 10.1111/
j.1365-2052.1996.tb01173.x
- Oner Y, Calvo JH, Elmacı C: Y chromosomal characterization of Turkish
native sheep breeds. Livest Sci, 136, 277-280, 2011. DOI: 10.1016/j.livsci.
2010 .08.015
- Meadows JRS, Kijas JW: Re-sequencing regions of the ovine Y
chromosome in domestic and wild sheep reveals novel paternal haplotypes.
Anim Genet, 40, 119-23, 2009. DOI: 10.1111/j.1365-2052.2008.01799.x
- Meadows JRS, Hanotte O, Drogemuller C, Calvo J, Godfrey R,
Coltman D, Maddox JF, Marzanov N, Kantanen J, Kijas JW: Globally
dispersed Y chromosomal haplotypes in wild and domestic sheep. Anim
Genet, 37, 444-453, 2006. DOI: 10.1111/j.1365-2052.2006.01496.x
- Meadows JRS, Hawken RJ, Kijas JW: Nucleotide diversity on the
ovine Y chromosome. Anim Genet, 35, 379-385, 2004. DOI: 10.1111/j.1365-
2052.2004.01180.x
- Kijas JW, Lenstra JA, Hayes B, Boitard S, Porto Neto LR, San
Cristobal M, Servin B, McCulloch R, Whan V, Gietzen K, Paiva S,
Barendse W, Ciani E, Raadsma H, McEwan J, Dalrymple B, members of
the International Sheep Genomics Consortium: Genome-wide analysis
of the world’s sheep breeds reveals high levels of historic mixture and
strong recent selection. PLoS Biol, 10 (2): e1001258, 2012. DOI: 10.1371/
journal.pbio.1001258
- Boettcher P: Priority Setting for Conservation of Animal Genetic
Resources. GLOBALDIV Final International Workshop. February 8 and 9,
Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland,
pp.16-18. 2010.
- Soysal MI, Tuna YT, Ozkan E, Gurcan EK, Togan I, Altunok V: A study
on the wool characteristics of several Turkish sheep breeds according to
the microsatellite DNA types. Pak J Biol Sci, 8, 186-189, 2005. DOI: 10.3923/
pjbs.2005.186.189
- Bruford MW, Bradley DG, Luikart G: DNA markers reveal the
complexity of livestock domestication. Nat Rev Genet, 4, 900-910, 2003.
DOI: 10.1038/nrg1203
- Zeder MA: Domestication and early agriculture in the Mediterranean
Basin: Origins, diffusion, and impact. Proc Natl Acad Sci U S A, 105, 11597-
11604, 2008. DOI: 10.1073/pnas.0801317105