Toxicity remission of PAEs on multireceptors after molecular modification through a 3D-QSAR pharmacophore model coupled with a gray interconnect degree method

Toxicity remission of PAEs on multireceptors after molecular modification through a 3D-QSAR pharmacophore model coupled with a gray interconnect degree method

In the proposed model, the gray interconnect degree method was employed to process the acute toxicity values of phthalate acid esters (PAEs) to green algae, daphnia, mysid, and fish (predicted by EPI Suite software) and to obtain the comprehensive characterization value of the multireceptor toxicity effect (MTE) of PAEs. The 3D-QSAR pharmacophore model indicated that hydrophobic groups significantly affected the MTE of PAEs. Based on this, 16 PAEs derivative molecules with significantly decreased comprehensive characterization value (more than 10%) of the toxic effects of multireceptors were designed. Among them, 13 PAEs derivative molecules reduced the toxicity values (predicted by the EPI Suite software) of four receptor organisms to varying degrees. Finally, two derivative molecules from PAEs were screened and could exist stably in the environment. The derivative molecule’s reduced toxicity to the receptor was obtained through molecular docking methods and simulated the PAEs’ primary metabolic response pathways. The above research results break through the pharmacophore model’s limitation of only being suitable for the single effect of pollutants. Its application provides a new theoretical verification basis for expanding the multieffect pharmacophore model.

___

  • 1. Chen ZF, Sun L, Yong W, Chu XG, Chen HM et al. Determination of DEHA in PVC cling film solution/precipitation technique and chromatography. Chinese Journal of Health Laboratory Technology 2006; 16 (7): 772-774.
  • 2. Zou YD, Xu QQ, Zhang G, Wang YQ, Liu C etal. Review on the joint toxicity of micro-plastics and pesticide pollution. Asian Journal of Ecotoxicology 2017; 12 (4): 25-33.
  • 3. Liu GH, Su P, Zhou L, Yang Y. Microwave-assisted preparation of poly (ionic liquid)-modified polystyrene magnetic nanospheres for phthalate esters extraction from beverages. Journal of Separation Science 2017; 40: 2603-2611. doi: 10.1002/jssc.201601428
  • 4. Li HN, Zhu XP, Jiang Y, Ni JR. Comparative electrochemical degradation of phthalic acid esters using boron-doped diamond and Pt anodes. Chemosphere 2010; 80 (8): 845-851. doi: 10.1016/j.chemosphere.2010.06.006
  • 5. Net S, Sempéré R, Delmont A, Paluselli A, Ouddane B. Occurrence, fate, behavior and ecotoxicologicalstate of phthalates in different environmental matrices. Environmental Science & Technology 2015; 49 (7): 4019-4035. doi: 10.1021/es505233b
  • 6. Bope AM, Haines SR, Hegarty B, Weschler CJ, Peccia J et al. Degradation of phthalate esters in floor dust at elevated relative humidity. Environmental Science: Processes & Impacts 2019; 21: 1268-1279. doi: 10.1039/C9EM00050J
  • 7. Staples CA, Peterson DR, Parkerton TF, Adams WJ. The environmental fate of phthalate esters: a literature review. Chemosphere 1997; 35: 667-749. doi: 10.1016/S0045-6535(97)00195-1
  • 8. Fromme H, Lahrz T, Piloty M, Gebhart H, Oddoy A et al. Occurrence of phthalates and musk fragrances in indoor air and dust from apartments and kinder gardens in Berlin (Germany). Indoor Air 2004; 14 (3): 188-195. doi: 10.1111/j.1600-0668.2004.00223.x
  • 9. Selvaraj KK, Sundaramoorthy G, Ravichandran PK, Girijan GK, Sampath S et al. Phthalate esters in water and sediments of the Kaveri River, India: environmental levels and ecotoxicological evaluations. Environmental Geochemistry & Health 2015; 37 (1): 83-96. doi: 10.1007/s10653-014-9632-5
  • 10. Watanabe T. Determination of dialkyl phthalates in high altitude atmosphere for validation of sampling method using a helicopter. Bulletin of Environmental Contamination and Toxicology 2001; 66 (4): 456-463. doi: 10.1007/s001280028
  • 11. Elcombe CR, Odum J, Foster JR, Stone S, Hasmall S et al. Prediction of rodent nongenotoxic carcinogenesis: evaluation of biochemical and tissue changes in rodents following exposure to nine nongenotoxic NTP carcinogens. Environmental Health Perspectives 2002; 110 (4): 363-375. doi: 10.1289/ehp.02110363
  • 12. Ema M, Harazono A, Miyawaki E, Ogawa Y. Developmental toxicity of mono-n-benzyl phthalate, one of the major metabolites of the plasticizer n-butyl benzyl phthalate, in rats. Toxicology Letters 1996; 86 (1): 19-25. doi: 10.1016/0378-4274(96)03665-X
  • 13. Ramaswamy BR, Gopalakrishnan P, Rama KP, Nishikant PN, Krishnamoorthi V et al. GC-MS determination of phthalate esters in human urine: a potential biomarker for phthalate bio-monitoring. Journal of Chromatography B 2018; 1079: 15-24. doi: 10.1016/j. jchromb.2018.01.039
  • 14. Jin DC, Kong X, Cui BJ, Bai ZH, Zhang HX. Biodegradation of di-n-butyl phthalate by a newly isolated halotolerant sphingobium sp. International Journal of Molecular Sciences 2013; 14 (12): 24046-24054. doi: 10.3390/ijms141224046
  • 15. Li HT, Huang SL. Distribution and transformation of phthalate esters in aqueous environment. Environmental Pollution & Control 2006; 28 (11): 853-857. doi: 10.1016/j.ejps.2006.05.004
  • 16. Zhang LL, Liu JL, Liu HY, Wan GS, Zhang SW. The occurrence and ecological risk assessment of phthalate esters (PAEs) in urban aquatic environments of China.Ecotoxicology 2015; 24 (5): 1-18. doi: 10.1007/s10646-015-1446-4
  • 17. Hu XY, Zhang KR, Sun JH, Wu DS. Environmental contamination by phthalates in china. Chinese Journal of Health Laboratory Technology 2003; 13 (1): 9-14 (in Chinese with an abstract in English). doi: 10.3969/j.issn.1004-8685.2003.01.001
  • 18. Wu ZH. Ecotoxicology of phthalate on four marine algae. MSc, Jinan University, Guangdong, China, 2006 (in Chinese with an abstract inEnglish).
  • 19. Lee RF, Nevenzel JC, Paffenhöfer GA. Importance of wax esters and other lipids in the marine food chain: phytoplankton and copepods. Marine Biology 1971; 9 (2): 99-108. doi: 10.1007/BF00348249
  • 20. Zhang YC, Jiang YQ, Ye ZJ, Liu H, Xing ZP. Preliminary study on demersal community structure of nekton in Meizhou Bay. Journal of Zhejiang Ocean University (Natural Science) 2017; 36 (4): 360-367 (in Chinese with an abstract in English). doi: 10.3969/j.issn.1008- 830X.2017.04.013
  • 21. Bie CC, Li FM, Li YY, Wang ZY. Effects of allelochemical dibutyl phthalate on gymnodinium breve reactive oxygen species. Chinese Journal of Environmental Science 2012; 33(2): 442-447 (in Chinese with an abstract in English). doi: CNKI:SUN:HJKZ.0.2012-02-017
  • 22. BanYL, Shen Q, Wang TY, Xie X. Reproductive toxicity and transgenerational effects of di(2-ethylhexyl) phthalate (DEHP) on water fleas daphnia magna. Journal of Dalian Ocean University 2019; 34(1): 1-5 (in Chinese with an abstract in English).
  • 23. Giam CS, Chan HS, Neff GS, Atlas E. Phthalate esters plasticizers: a new class of marine pollutant. Science 1978; 199 (4327): 419-421. doi: 10.1126/science.419-a
  • 24. Patyna P, Cooper KR. Multi-generation reproductive effects of three phthalate esters in Japanese medaka (Oryziaslatipes). Marine Environmental Research 2000; 50 (1-5): 194. doi: 10.1016/S0141-1136(00)00175-6
  • 25. Organization for Economic Co-operation and Development (OECD). Guidance document on the validation of(Quantitative)structureactivity relationships QSAR models. OECD Series Oil Testing and Assessment. Paris, France: OECD, 2007.
  • 26. Song WH, Guo J, Ding F, Hu WX, Li Z et a1. Study on acute toxicity and structure-activity relationship of daphnia magna exposed to naphthoquinones. Environmental Toxicology and Pharmacology 2011; 32 (1): 102-106. doi: 10.1016/j.etap.2011.04.001
  • 27. Wang T, Zhou XH, Wang DL, Yin DQ, Lin ZF. Using molecular docking between organic chemicals and lipid membrane to revise the wellknown octanol-water partition coefficient of the mixture.Environmental Toxicology and Pharmacology 2012; 34 (1): 59-66. doi: 10.1016/j. etap.2012.02.008
  • 28. Qiu YL, Xin ML, Li Y. Derivatization enhanced Raman characteristic vibration spectrum of PAEs based on pharmacophore model. Spectroscopy and Spectral Analysis 2018; 38 (2): 441-447.
  • 29. Jiang L, Li Y. Modification of PBDEs (BDE-15, BDE-47, BDE-85 and BDE-126) biological toxicity, bio-concentration, persistence and atmospheric long-range transport potential based on the pharmacophore modeling assistant with the full factor experimental design. Journal of Hazardous Materials 2016; 307: 202-212. doi: 10.1016/j.jhazmat.2015.12.031
  • 30. Zhang SL, Zhang GL. Comparison between computation models of grey interconnect degree and analysis on their shortage. Systems Engineering 1996; 14 (3): 45-49 (in Chinese).
  • 31. Murray AP, Richardson BJ, Gibbs CF. Bio-concentration factors for petroleum hydrocarbons, PAHs, LABs and biogenic hydrocarbons in the blue mussel. Marine Pollution Bulletin 1991; 22 (12): 595-603. doi: 10.1016/0025-326X(91)90247-P
  • 32. Cui J, Dang YG, Liu SF. An improved approach for determining weights of attributes in decision making based on grey incidence. Chinese Journal of Management Science 2008; 16 (5): 141-145. doi: 10.1007/s11401-007-0162-7
  • 33. Melchers WJG, Hoenderop JGJ, Slot HJB, Pleij CWA, Pilipenko EV et al. Kissing of the two predominant hairpin loops in the coxsackie B virus 3’ untranslated region is the essential structural feature of the origin of replication required for negative-strand RNA synthesis. Journal of Virology 1997; 71 (1): 686-696. doi: 0022-538X/97/$04.00+0
  • 34. Huang HJ, Lee CC, Chen YC. Pharmacological chaperone design for reducing risk factor of Parkinson’s disease from traditional Chinese medicine. Evidence-based Complementary and Alternative Medicine 2014; (4): 1-12. doi: 10.1155/2014/830490
  • 35. Vincent LR, Bellini, Lisa M. William of Occam and Occam’s Razor. Annals of Internal Medicine 2002; 136 (8): 634-635. doi: 10.7326/0003- 4819-136-8-200204160-00022
  • 36. Nayana RS, Bommisetty SK, Singh K, Bairy SK et al. Structural analysis of carboline derivatives as inhibitors of MAPKAP K2 using 3D QSAR and docking studies. Journal of Chemical Information and Modeling 2009; 49 (1): 53-67. doi: 10.1021/ci800294y
  • 37. Bao HJ, Zhang YL, Qiao YJ. Pharmacophore model generation of PDE4 inhibitors. Chinese Medicinal Biotechnology 2008; 3 (4): 266 -272 (in Chinese with an abstract in English). doi: CNKI:SUN:ZYSW.0.2008-04-011
  • 38. Diller DJ, Merz KM. High throughput docking for library design and library prioritization. Proteins: Structure, Function, and Bioinformatics 2001; 43 (2):113-124. doi: 10.1002/1097-0134(20010501)43:2<113::AID-PROT1023>3.0.CO;2
  • 39. Zhang YC. A DFT study on the conversion of chlorobenzenes to parachlorophenols promoted by transition metal monoxide. MSc, Zhejiang Sci-Tech University, Zhejiang, China, 2015. doi: 10.7666/d.D630788
  • 40. Jiang L. Investigation on the identification and environmental behavior controlling of PBDEs through the Quantum chemical calculation and QSAR model. PhD, North China Electric Power University, Beijing, China, 2016.
  • 41. Wang XL, Chu ZH, Yang JW, Li Y. Pentachlorophenol molecule design with lower bio-concentration through 3D-QSAR associated with molecule docking. Environmental Science & Pollution Research 2017; 24 (18): 25114-25125. doi: 10.1007/s11356-017-0129-5
  • 42. Qiu YL, Jiang L, Li Y. Theoretical support for the enhancement of infrared spectrum signals by derivatization of phthalic acid esters using a pharmacophore model. Spectroscopy Letters 2018; 51 (3): 155-162. doi: 10.1080/00387010.2018.1442353
  • 43. Zhao YY, Li Y. Design of environmentally friendly neonicotinoid insecticides with bio-concentration tuning and bi-directional selective toxic effects. Journal of Cleaner Production 2019; 221: 113-121. doi: 10.1016/j.jclepro.2019.02.156
  • 44. Qian HF, Xu XY, Chen W, Jiang H, Jin YX et al. Allelochemical stress causes oxidative damage and inhibition of photosynthesis in Chlorella vulgaris. Chemosphere 2009; 75 (3): 368-375. doi: 10.1016/j.chemosphere.2008.12.040
  • 45. Lepage G, Munoz G, Champagne J, Roy CC. Preparative steps for the accurate measurement of malondialdehyde by high performance liquid chromatography. Analytical Biochemistry 1991; 197 (2): 277-283. doi: 10.1016/0003-2697(91)90392-7
  • 46. Xie XL. Investigations on the regulation of NA Gase activity and the correlation of NA Gase with the growth of prawn (Litopenaeusvannamei). PhD, Xiamen University, Xiamen, China, 2010.
  • 47. Gao ZP, Jian DQ, Lv FJ, Xie XL. Effects of exposure of dimethylphthalate on chitinase from epidermis of Litopenaeusvannamei. Jiangsu Agricultural Sciences 2017; 45 (17): 155-158 (in Chinese). doi: 10.15889/j.issn.1002-1302.2017.17.042
  • 48. Lapinskas PJ, Brown S, Leesnitzer LM, Blanchard S, Swanson C et al. Role of PPAR-α in mediating the effects of phthalates and metabolites in the liver. Toxicology 2005; 207 (1): 149-163. doi: 10.1016/j.tox.2004.09.008
  • 49. Xin ML, Chu ZH, Li Y. Molecular modification of polychlorinated biphenyl dihydroxy derivatives through molecular docking associated with CoMSIA/HQSAR models. Chemical Journal of Chinese Universities 2018; 39 (2): 299-309. doi: 10.7503/cjcu20170402
  • 50. Suzuki T, Yaguchi K, Suzuki S,Suga T. Monitoring of phthalic acid monoesters in river water by solid-phase extraction and GC-MS determination. Environmental Scienceand Technology 2001; 35 (18): 3757-3763. doi: 10.1021/es001860i
  • 51. Ge J, Li MK, Lin F, Zhao J, Han BY. Metabolism of phthalic acid esters in Ctenopharyngodonidellus organs and hepatocyte. Oceanologia et Limnologia Sinica 2011; 42(4): 549-553. doi: 10.1007/s11783-010-0264-4
  • 52. Chen B. Research on release and bioavailability of phthalate esters during the decomposition of hydrillaverticillata. MsC, Tianjin University, Tianjin, China, 2009. doi: 10.7666/d.y1677265
  • 53. Wang YC. Mechanism of polycystalline silicon reduction from the standpoint of activation energy. Chemical Engineer 2012; 5: 24-25 (in Chinese with an abstract in English). doi: CNKI:SUN:HXGC.0.2012-05-008