Running sigmas analysis of sampled molecular paraphyly in Pottiaceae (Bryophyta)

Running sigmas analysis of sampled molecular paraphyly in Pottiaceae (Bryophyta)

A spreadsheet dealing with standard deviations allows statistical examination of continuous variables associated with paraphyly in systematics, with examples in the Pottiaceae (Bryophyta). Outlier values in taxonomic representation of distribution with the structure of (w–)x–y(–z) of continuous variables can be empirically supported. The use of the geometric mean and intuitional estimation is reexamined. Published reports of the distance between maximally distant exemplars of individual paraphyletic species in molecular cladograms in several studies were reevaluated as metadata. Levels of standard deviations were assigned with the Running Sigmas spreadsheet. A spike in width of exemplars of a paraphyletic species of a moss in the family Pottiaceae, Exobryum asperifolium, was identified as an outlier. Techniques of macroevolutionary systematics, however, assured that no different evolutionary processes were involved that may have supported an explanation of taxonomic crypsis. Instead it was found that metadata heterogeneity was the problem in that the paraphyly width of 14 molecular cladogram nodes which is evolutionarily acceptable as a clear-cut progenitordescendant lineage with no reversals.

___

  • Aubert D (2017). A simple parsimony-based approach to assess ancestor-descendant relationships. Ukrainian Botanical Journal 74: 103–121.
  • Barrow JD (1992). Pi in the Sky: Counting, Thinking, and Being. Oxford; Clarendon Press.
  • Kučera J, Ignatov MS (2015). Revision of phylogenetic relationships of Didymodon sect. Rufiduli (Pottiaceae, Musci). Arctoa 24: 79–97.
  • Ragsdale CT (2004). Spreadsheet Modeling and Decision Analysis. Fourth Edition. Mason, Ohio, U.S.A.; Thomson-Southwestern.
  • Moore D S & Notz WI (2006). Statistics: Concepts and Controversies. Sixth Edition. New York; W. H. Freeman.
  • Snedecor GW, Cochran WG (1967). Statistical Methods. Sixth Edition Ames, Iowa,l U.S.A.; Iowa State University Press.
  • Staley KW (2004). Evidence for the Top Quark: Objectivity and Bias in Collaborative Experimentation. Cambridge, U.K.; Cambridge University Press.
  • Tabachnick BG & Fidell LS (1989). Using Multivariate Statistics. Second Edition. New York; Harper-Collins, Publishers.
  • Thompson SK (2012). Sampling. Third Edition. Hoboken, New Jersey, U.S.A; John Wiley and Sons, Inc.
  • Wallis WA, Roberrts HV (1956). Statistics: A New Approach. Glencoe, Illinois, U.S.A; Free Press.
  • Winkler RL, Hays WL (1975). Statistics: Probability, Inference, and Decision. Second Edition. New York; Holt, Rinehart and Winston.
  • Zander R.H (1993). Genera of the Pottiaceae: mosses of harsh environments. Bulletin of the Buffalo Society of Natural Sciences 32: i–vi, 1–378.
  • Zander RH (2013). Framework for Post-Phylogenetic Systematics. St. Louis, U.S.A; Zetetic Publications.
  • Zander RH (2019a). Macroevolutionary versus molecular analysis: Systematics of the Didymodon segregates Aithobryum, Exobryum and Fuscobryum (Pottiaceae). Hattoria 10: 1–38.
  • Zander RH (2019b). Infraspecific molecular trees are associated with serial macroevolution in Pottiaceae (Bryophyta). Ukrainian Botanical Journal 76: 390–405.
Turkish Journal of Botany-Cover
  • ISSN: 1300-008X
  • Yayın Aralığı: Yılda 6 Sayı
  • Yayıncı: TÜBİTAK
Sayıdaki Diğer Makaleler

Application of structural, functional, fluorescent, and cytometric indicators for assessing physiological state of marine diatoms under different light growth conditions

Natalia SHOMAN, Ekaterina SOLOMONOVA, Arkadii AKIMOV

Ecological assessment of Burç Reservoir’s surface water (Turkey) using phytoplankton metrics and multivariate approach

Abuzer ÇELEKLİ, Gülümser ÖZPINAR

Taxonomic monograph of the tribe Nigelleae (Ranunculaceae): a group including ancient medicinal plants

Zübeyde UĞURLU AYDIN, Emel OYBAK DÖNMEZ, Ali A. DÖNMEZ

Chaetocin enhances callus induction by decreasing the expression of major leaf polarity genes in Nicotiana tabacum

Ayyub EBRAHIMI, Nagihan ÖZSOY, Deniz GÜRLE, Baki YAMAN, Şule ARI

Running sigmas analysis of sampled molecular paraphyly in Pottiaceae (Bryophyta)

Richard H. ZANDER

Bioassessment of water quality of surface waters using diatom metrics

Abuzer ÇELEKLİ, Mehmet YAVUZATMACA, Ömer LEKESİZ

Metabolite profiling, distribution of secretory structures, and histochemistry in Curculigo orchioides Gaertn. and Curculigo latifolia Dryand. ex W.T.Aiton

Diah RATNADEWI, Abdul Halim UMAR, Mohamad RAFI, Yohana Caecilia SULISTYANINGSIH, Hamim HAMIM

Integrating indicators of natural regeneration, enrichment planting, above-ground carbon stock, micro-climate and soil to asses vegetation succession in postmining reclamation in tropical forest

Trimanto, Lia HAPSARI, Sugeng BUDIHARTA

Using a supermatrix approach to explore phylogenetic relationships, divergence times, and historical biogeography of Saxifragales

Bryan T. DREW, Cara TARULLO, Jeffrey P. ROSE, Kenneth J. SYTSMA

Investigation of the effects of overexpression of Novel_105 miRNA in contrasting potato cultivars during separate and combined drought and heat stresses

Melis YALÇIN, Zahide Neslihan ÖZTÜRK GÖKÇE