The ciliopathy gene product Cep290 is required for primary cilium formation and microtubule network organization

The ciliopathy gene product Cep290 is required for primary cilium formation and microtubule network organization

The mammalian centrosome/cilium complex is composed of the centrosome, the primary cilium, and the centriolar satellites,which together function in key cellular processes including signaling. Defective assembly, maintenance, and function of the centrosome/cilium complex cause the human genetic diseases known as ciliopathies, which are characterized by a multitude of developmentalsyndromes including retinal degeneration and kidney cysts. The molecular mechanisms underlying pathogenesis in ciliopathies remainpoorly understood, which requires structural and functional characterization of the mutated ciliopathy proteins at the cellular level. Tothis end, we elucidated the function and regulation of Cep290, which is the most frequently mutated gene in ciliopathies and importantlyits functions remain poorly understood. First, we generated Cep290-null cells using the CRISPR/Cas9 genome editing approach. Usingfunctional assays, we showed that Cep290-null cells do not ciliate and that they have defects in centriolar satellites dynamics andinterphase microtubule organization. The centriolar satellites were tightly clustered around the centrosome in Cep290-null cells, andthe interphase microtubule network lost its radial organization. Our results provide phenotypic insight into the disease mechanisms ofCep290 ciliopathy mutations and also the tools for studying genotype/phenotype relationships in ciliopathies.

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  • Azimzadeh J, Bornens M (2007). Structure and duplication of the centrosome. J Cell Sci 120: 2139-2142.
  • Baala L, Audollent S, Martinovic J, Ozilou C, Babron MC, Sivanandamoorthy S, Saunier S, Salomon R, Gonzales M, Rattenberry E et al (2007). Pleiotropic effects of CEP290 (NPHP6) mutations extend to Meckel syndrome. Am J Hum Genet 81: 170-179.
  • Bazzi H, Anderson KV (2014). Acentriolar mitosis activates a p53- dependent apoptosis pathway in the mouse embryo. P Natl Acad Sci USA 111: E1491-1500.
  • Betleja E, Cole DG (2010). Ciliary trafficking: CEP290 guards a gated community. Curr Biol 20: R928-931.
  • Bettencourt-Dias M, Hildebrandt F, Pellman D, Woods G, Godinho SA (2011). Centrosomes and cilia in human disease. Trends Genet 27: 307-315.
  • Brancati F, Barrano G, Silhavy JL, Marsh SE, Travaglini L, Bielas SL, Amorini M, Zablocka D, Kayserili H, Al-Gazali L et al (2007). CEP290 mutations are frequently identified in the oculo-renal form of Joubert syndrome-related disorders. Am J Hum Genet 81: 104-113.
  • Conkar D, Culfa E, Odabasi E, Rauniyar N, Yates JR 3rd, Firat-Karalar EN (2017). Centriolar satellite protein CCDC66 interacts with CEP290 and functions in cilium formation and trafficking. J Cell Sci 130: 1450-1462.
  • Coppieters F, Lefever S, Leroy BP, De Baere E (2010). CEP290, a gene with many faces: mutation overview and presentation of CEP290base. Hum Mutat 31: 1097-1108.
  • Craige B, Tsao CC, Diener DR, Hou Y, Lechtreck KF, Rosenbaum JL, Witman GB (2010). CEP290 tethers flagellar transition zone microtubules to the membrane and regulates flagellar protein content. J Cell Biol 190: 927-940.
  • Dammermann A, Merdes A (2002). Assembly of centrosomal proteins and microtubule organization depends on PCM-1. J Cell Biol 159: 255-266.
  • Dekomien G, Vollrath C, Petrasch-Parwez E, Boeve MH, Akkad DA, Gerding WM, Epplen JT (2010). Progressive retinal atrophy in Schapendoes dogs: mutation of the newly identified CCDC66 gene. Neurogenetics 11: 163-174.
  • Firat-Karalar EN, Rauniyar N, Yates JR 3rd, Stearns T (2014). Proximity interactions among centrosome components identify regulators of centriole duplication. Curr Biol 24: 664-670.
  • Frank V, den Hollander AI, Bruchle NO, Zonneveld MN, Nurnberg G, Becker C, Du Bois G, Kendziorra H, Roosing S, Senderek J et al (2008). Mutations of the CEP290 gene encoding a centrosomal protein cause Meckel-Gruber syndrome. Hum Mutat 29: 45-52.
  • Gerding WM, Schreiber S, Schulte-Middelmann T, de Castro Marques A, Atorf J, Akkad DA, Dekomien G, Kremers J, Dermietzel R, Gal A et al (2011). Ccdc66 null mutation causes retinal degeneration and dysfunction. Hum Mol Genet 20: 3620-3631.
  • Goncalves J, Pelletier L (2017). The Ciliary transition zone: finding the pieces and assembling the gate. Mol Cells 40: 243-253.
  • Gupta GD, Coyaud E, Goncalves J, Mojarad BA, Liu Y, Wu Q, Gheiratmand L, Comartin D, Tkach JM, Cheung SW et al (2015). A dynamic protein interaction landscape of the human centrosome-cilium interface. Cell 163: 1484-1499.
  • Izquierdo D, Wang WJ, Uryu K, Tsou MF (2014). Stabilization of cartwheel-less centrioles for duplication requires CEP295- mediated centriole-to-centrosome conversion. Cell Rep 8: 957- 965.
  • Johnson JL, Leroux MR (2010). cAMP and cGMP signaling: sensory systems with prokaryotic roots adopted by eukaryotic cilia. Trends Cell Biol 20: 435-444.
  • Kim J, Krishnaswami SR, Gleeson JG (2008). CEP290 interacts with the centriolar satellite component PCM-1 and is required for Rab8 localization to the primary cilium. Hum Mol Genet 17: 3796-3805.
  • Kobayashi T, Dynlacht BD (2011). Regulating the transition from centriole to basal body. J Cell Biol 193: 435-444.
  • Kubo A, Sasaki H, Yuba-Kubo A, Tsukita S, Shiina N (1999). Centriolar satellites: molecular characterization, ATPdependent movement toward centrioles and possible involvement in ciliogenesis. J Cell Biol 147: 969-980.
  • Leitch CC, Zaghloul NA, Davis EE, Stoetzel C, Diaz-Font A, Rix S, Alfadhel M, Lewis RA, Eyaid W, Banin E et al (2008). Hypomorphic mutations in syndromic encephalocele genes are associated with Bardet-Biedl syndrome. Nat Genet 40: 443- 448.
  • Lopes CA, Prosser SL, Romio L, Hirst RA, O’Callaghan C, Woolf AS, Fry AM (2011). Centriolar satellites are assembly points for proteins implicated in human ciliopathies, including oralfacial-digital syndrome 1. J Cell Sci 124: 600-612.
  • Mourao A, Christensen ST, Lorentzen E (2016). The intraflagellar transport machinery in ciliary signaling. Curr Opin Struc Biol 41: 98-108.
  • Nachury MV (2014). How do cilia organize signalling cascades? Philos Trans R Soc Lond B Biol Sci 369: 1650.
  • Nachury MV (2018). The molecular machines that traffic signaling receptors into and out of cilia. Curr Opin Cell Biol 51: 124-131.
  • Nigg EA, Raff JW (2009). Centrioles, centrosomes, and cilia in health and disease. Cell 139: 663-678.
  • Rachel RA, Yamamoto EA, Dewanjee MK, May-Simera HL, Sergeev YV, Hackett AN, Pohida K, Munasinghe J, Gotoh N, Wickstead B et al (2015). CEP290 alleles in mice disrupt tissue-specific cilia biogenesis and recapitulate features of syndromic ciliopathies. Hum Mol Genet 24: 3775-3791.
  • Reiter JF, Leroux MR (2017). Genes and molecular pathways underpinning ciliopathies. Nat Rev Mol Cell Biol 18: 533-547.
  • Silva E, Betleja E, John E, Spear P, Moresco JJ, Zhang S, Yates JR 3rd, Mitchell BJ, Mahjoub MR (2016). Ccdc11 is a novel centriolar satellite protein essential for ciliogenesis and establishment of left-right asymmetry. Mol Biol Cell 27: 48-63.
  • Sorokin SP (1968). Reconstructions of centriole formation and ciliogenesis in mammalian lungs. J Cell Sci 3: 207-230.
  • Stephen LA, Elmaghloob Y, Ismail S (2017). Maintaining protein composition in cilia. Biol Chem 399: 1-11.
  • Stowe TR, Wilkinson CJ, Iqbal A, Stearns T (2012). The centriolar satellite proteins Cep72 and Cep290 interact and are required for recruitment of BBS proteins to the cilium. Mol Biol Cell 23: 3322-3335.
  • Taschner M, Lorentzen E (2016). The intraflagellar transport machinery. CSH Perspect Biol 8: 10.
  • Tollenaere MA, Mailand N, Bekker-Jensen S (2015). Centriolar satellites: key mediators of centrosome functions. Cell Mol Life Sci 72: 11-23.
  • Travaglini L, Brancati F, Attie-Bitach T, Audollent S, Bertini E, Kaplan J, Perrault I, Iannicelli M, Mancuso B, Rigoli L et al (2009). Expanding CEP290 mutational spectrum in ciliopathies. Am J Med Genet A 149A: 2173-2180.
  • Tsang WY, Bossard C, Khanna H, Peranen J, Swaroop A, Malhotra V, Dynlacht BD (2008). CP110 suppresses primary cilia formation through its interaction with CEP290, a protein deficient in human ciliary disease. Dev Cell 15: 187-197.
  • Valente EM, Silhavy JL, Brancati F, Barrano G, Krishnaswami SR, Castori M, Lancaster MA, Boltshauser E, Boccone L, AlGazali L et al (2006). Mutations in CEP290, which encodes a centrosomal protein, cause pleiotropic forms of Joubert syndrome. Nat Genet 38: 623-625.
  • Van der Heiden K, Egorova AD, Poelmann RE, Wentzel JJ, Hierck BP (2011). Role for primary cilia as flow detectors in the cardiovascular system. Int Rev Cell Mol Biol 290: 87-119.
  • Vorobjev IA, Chentsov YuS (1982). Centrioles in the cell cycle. I. Epithelial cells. J Cell Biol 93: 938-949.