Hirshfeld Surface Analysis and Interaction Energy Calculations of Bis(4-chlorophenylacetate)bis(pyridine-4-carboxamide)Zinc(II)

Hirshfeld Surface Analysis and Interaction Energy Calculations of Bis(4-chlorophenylacetate)bis(pyridine-4-carboxamide)Zinc(II)

Hirshfeld surface analysis has been widely used in crystallography in recent years to investigate intermolecular interactions and to determine the contribution of these interactions to the crystal lattice. Fingerprint plots, which are given as color plots, present quantitative results of the types of intermolecular interactions in a molecule. In this study, we investigated intermolecular interactions and energy frameworks of Zn(II) 4-chlorophenylacetate containing pyridine 4-carboxamide complex by using CrystalExplorer program. Intermolecular interactions of the complex were determined using Hirshfeld Surface analysis. The intermolecular interaction energies of the complex were calculated using CE-HF/3-21G, CE-HF/6-31G (d), CE-HF/6-31G (d,p), CE-MP2/3-21G, CE-MP2/6-31G (d), CE-MP2/6-31G (d,p), CE-B3LYP/3-21G, CE-B3LYP/6-31G (d), CE-B3LYP/6-31G (d,p), CE-DFT/3-21G, CE-DFT/6-31G (d) and CE-DFT/6-31G (d,p) energy models that involved in CrystalExplorer (CE) program. The estimation of the intermolecular interactions and energies of the complexes is very important for the classification and investigation of their application areas.

___

  • Caracelli I., Zukerman-Schpector J., Schwab R. S., Silva E. M. da, Jotani M. M., Tiekink E. R. T. (2019). 2-Methyl-4-(4-nitrophenyl)but-3-yn-2-ol: crystal structure, Hirshfeld surface analysis and computational chemistry study. Acta Crystallographica Section E Crystallographic Communications, 75(8), 1232–1238. https://doi.org/10.1107/S2056989019010284
  • Etse K. S., Lamela L. C., Zaragoza G., Pirotte B. (2020). Synthesis, crystal structure, Hirshfeld surface and interaction energies analysis of 5-methyl-1,3-bis(3-nitrobenzyl)pyrimidine-2,4(1H,3H)-dione. European Journal of Chemistry, 11(2), 91–99. https://doi.org/10.5155/eurjchem.11.2.91-99.1973
  • Caracelli I., Zukerman-Schpector J., Schwab R. S., Silva E. M. da, Jotani M. M., Tiekink E. R. T. (2019). 2-Methyl-4-(4-nitrophenyl)but-3-yn-2-ol: crystal structure, Hirshfeld surface analysis and computational chemistry study. Acta Crystallographica Section E Crystallographic Communications, 75(8), 1232–1238. https://doi.org/10.1107/S2056989019010284
  • Etse K. S., Lamela L. C., Zaragoza G., Pirotte B. (2020). Synthesis, crystal structure, Hirshfeld surface and interaction energies analysis of 5-methyl-1,3-bis(3-nitrobenzyl)pyrimidine-2,4(1H,3H)-dione. European Journal of Chemistry, 11(2), 91–99. https://doi.org/10.5155/eurjchem.11.2.91-99.1973
  • Hirshfeld F. L. (1977). Bonded-atom fragments for describing molecular charge densities. Theoretica Chimica Acta, 44(2), 129–138. https://doi.org/10.1007/BF00549096
  • Jayatilaka D., & Grimwood D. J. (2003). Tonto: A Fortran Based Object-Oriented System for Quantum Chemistry and Crystallography. In P. M. A. Sloot, D. Abramson, A. V. Bogdanov, Y. E. Gorbachev, J. J. Dongarra, & A. Y. Zomaya (Eds.), Computational Science — ICCS 2003 (Vol. 2660, pp. 142–151). Berlin, Heidelberg: Springer Berlin Heidelberg. https://doi.org/10.1007/3-540-44864-0_15
  • Kirste B. (2016). Applications of Density Functional Theory to Theoretical Organic Chemistry. Chemical Sciences Journal, 7(2). https://doi.org/10.4172/2150-3494.1000127
  • Turner M. J., McKinnon J. J., Wolff S. K., Grimwood D. J., Spackman P. R., Jayatilaka D., Spackman M. A., CrystalExplorer17 (2017). University of Western Australia.
  • Mackenzie C. F., Spackman P. R., Jayatilaka D., Spackman M. A. (2017). CrystalExplorer model energies and energy frameworks: extension to metal coordination compounds, organic salts, solvates and open-shell systems. IUCrJ, 4(5), 575–587. https://doi.org/10.1107/S205225251700848X
  • Madan Kumar S. (2019). 3D energy frameworks of dimethylbenzophenone tetramorphs. Heliyon, 5(2), e01209. https://doi.org/10.1016/j.heliyon.2019.e01209
  • McKinnon J. J., Jayatilaka D., Spackman M. A. (2007). Towards quantitative analysis of intermolecular interactions with Hirshfeld surfaces. Chemical Communications, (37), 3814. https://doi.org/10.1039/b704980c
  • Özbek F. E., Sertçelik M., Yüksek M., Uğurlu G., Tonbul A. M., Necefoğlu H., Hökelek T. (2019). Synthesis and Crystallographic, Absorption and Emission Studies of 4-Pyridine Carboxamide of Zn(II) 4-Chlorophenylacetate. Journal of Fluorescence, 29(5), 1265–1275. https://doi.org/10.1007/s10895-019-02440-x
  • Spackman M. A., Jayatilaka D. (2009). Hirshfeld surface analysis. CrystEngComm, 11(1), 19–32. https://doi.org/10.1039/B818330A
  • Spackman M. A., McKinnon J. J., Jayatilaka D. (2008). Electrostatic potentials mapped on Hirshfeld surfaces provide direct insight into intermolecular interactions in crystals. CrystEngComm, 10(4), 377–388. https://doi.org/10.1039/B715227B
  • Tan S. L., Jotani M. M., Tiekink E. R. T. (2019). Utilizing Hirshfeld surface calculations, non-covalent interaction (NCI) plots and the calculation of interaction energies in the analysis of molecular packing. Acta Crystallographica Section E Crystallographic Communications, 75(3), 308–318. https://doi.org/10.1107/S2056989019001129
  • Toy M., Tanak H., Şenöz H. (2020). Experimental and DFT computational studies of novel 3-(p-cyanophenyl)-5-(o,m,p-nitrophenyl)-5-phenylformazans. Journal of Molecular Structure, 1213, 128178. https://doi.org/10.1016/j.molstruc.2020.128178
Caucasian Journal of Science-Cover
  • Yayın Aralığı: Yılda 2 Sayı
  • Başlangıç: 2014
  • Yayıncı: Kafkas Üniversitesi
Sayıdaki Diğer Makaleler

Determination of Cytotoxicity of Zinc 2-Bromobenzoate with Nicotinamide and N,N'-Diethylnicotinamide Complexes

Giray Buğra AKBABA

Investigation of the Effect of Acrylamide on Capoeta Capoeta (Guldensttead 1773) by Histopathological, Electrophoretic and Biochemical Methods

Pinar AKSU KILIÇLE, Evren KOÇ, Abdullah DOĞAN, Süleyman GÜL, Ali Nazmi Can DOĞAN, Yusuf ERSAN

Assessment of Mass Attenuation Coefficient, Effective Atomic Number and Electron Density of Some Aluminum Alloys

Gülçin BİLGİCİ CENGİZ (EKER), İlyas ÇAĞLAR

Effect of ACE Plus Selenium on Total Antioxidant/Oxidant Capacity and Nitric Oxide Levels in Rabbits

Ahmet HARMANKAYA, Ayla ÖZCAN, Rüya KAYA, Çağatay ÖZBEY, Onur ATAKİSİ, Kezban DALGINLI

Determination of Transfer Factors of Natural Radionuclides from Soil-to-Wheat Flour Consumed by Kars People

Gülçin BİLGİCİ CENGİZ (EKER), İlyas ÇAĞLAR, Aslıhan ÇAĞLAR

Immunohistochemical Investigation of Trk-A Receptor Levels in Pancreatic Tissue of Cumin (Cuminum cyminum) Plant Essential Oil Treated-Mice

Şükran ARAS, Buket BAKIR, Sevda ELİŞ YILDIZ, Pinar AKSU KILIÇLE, Süleyman GÜL, Ebru KARADAĞ SARI

Fare Kemik İliği Hücrelerinde Siklofosfamid Tarafından İndüklenen Genotoksisiteye Karşı Tarhun (Artemisia dracunculus L.) Yaprak Ekstraktının Olası Koruyucu Etkisinin Mikronükleus Testi ile Belirlenmesi

Hatice ULU, Pinar AKSU KILIÇLE

Hirshfeld Surface Analysis and Interaction Energy Calculations of Bis(4-chlorophenylacetate)bis(pyridine-4-carboxamide)Zinc(II)

Füreya Elif ÖZBEK, Mustafa SERTÇELİK, Mustafa YÜKSEK