Microsatellite-Based Genetic Diversity and Admixture History of Rainbow Trout (Oncorhynchus mykiss – Walbaum, 1792) Stocks in Trentino (Italy)

Italy is the first producer of rainbow trout in Europe (EU member) and Trentino farmers represent roughly 8% of thisproduction, but genetic information of the stocks employed is still lacking. This study aimed to estimate the genetic variabilityof the rainbow trout stocks farmed in Trentino and to reconstruct the related admixture history. Sixty hundred and thirty -twoanimals belonging to 23 different stocks were analysed using microsatellite loci. Seventeen stocks showed negative values ofinbreeding coefficient within population ($F_{is}$ ranging from -0.06 to -0.107). NJ tree of genetic distances among stocks showeddistinct clusters reflecting, at least partially, the information coming from known history. Discriminant analysis of principalcomponents evidenced only 2 main groups of trout whereas model-based cluster analyses could detect 7 genetically distinctgroups, underlining an influence from an old commercial Danish stock. Rainbow trout in Trentino showed a recent history ofadmixture with a lower level of genetic differentiation among stocks when compared to wild populations (F_{ST} = 7.7%). Theresults confirmed the rather similar genetic origin of the analysed populations, highlighting the necessity to carefully managethe stocks to prevent phenomena of inbreeding and, more often, outbreeding depression.

___

Allendorf, F.W., & Utter, F.M. (1979). Population genetics. In W.S. Hoar, D.J. Randall, & J.R. Brett (Eds.) Fish Physiology, (pp. 407–454). New York, USA. Academic Press,

FEAP (2016). European Aquaculture Production Report 2007-2015. Liege, Belgium, FEAP Secretariat, 46 pp.

Ferguson, M.M., & Danzmann, R.G. (1998). Role of genetic markers in fisheries and aquaculture: useful tools or stamp collecting? Canadian Journal Fisheries Aquatic Science, 55(7), 1553–1563. http://doi.org/10.1139/f98-096

Gall, G.A.E., & Crandell, P.A. (1992). The rainbow trout. Gall GAE Edition. Stirling, UK, Elsevier Science, 346 pp.

Gjedrem, T. (2000). Genetic improvement of cold-water fish species. Aquaculture Research, 31(1), 25–33. https://doi.org/10.1046/j.1365-2109.2000.00389.x

Glover, K.A. (2008). Genetic characterisation of farmed rainbow trout in Norway: intra- and inter-strain variation reveals potential for identification of escapees. BMC Genetics, 9(1), 87-97. http://doi.org/10.1186/1471-2156-9-87

Goudet, J. (2005). Hierfstat, a package for r to compute and test hierarchical F-statistics. Molecular Ecology Notes, 5(1), 184–186. https://doi.org/10.1111/j.1471- 8286.2004.00828.x

Gross, R., Lulla, P., & Paaver, T. (2007). Genetic variability and differentiation of rainbow trout (Oncorhynchus mykiss) strains in Northern and Eastern Europe. Aquaculture, 272(S1), S139-S146. http://doi.org/10.1016/j.aquaculture.2007.08.004

Gutiérrez, J.P., Royo, L.J., Álvarez, I., & Goyache, F. (2005). MolKin v2.0: a computer program for genetic analysis of populations using molecular coancestry information. Journal of Heredity, 96(6), 718-721. http://doi.org/10.1093/jhered/esi118

Hurlbert, S.H. (1971). The non concept of species diversity: a critique and alternative parameters. Ecology, 52(4), 577-586. https://doi.org/10.2307/1934145

Jakobsson, M., & Rosenberg, N.A. (2007). CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics, 23(14), 1801- 1806. https://doi.org/10.1093/bioinformatics/btm233

Johnson, N.A., Rexroad, C.E., Hallerman, E.M., Vallejo, R.L., & Palti, Y. (2007). Development and evaluation of a new microsatellite multiplex system for parental allocation and management of rainbow trout (Oncorhynchus mykiss) broodstocks. Aquaculture, 266(1-4), 53–62. http://doi.org/10.1016/j.aquaculture.2007.02.054

Jombart, T. (2008). Adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics, 24(11), 1403-1405. http://10.1093/bioinformatics/btn129

Jombart, T., Pontier, D., & Dufour, A.B. (2009). Genetic markers in the playground of multivariate analysis. Heredity, 102(4), 330-341. http://doi.org/10.1038/hdy.2008.130

Kamvar, Z.N., Tabima, J.F., & Grünwald, N.J. (2014). Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction. Peer Journal, 2, e281. http://doi.org/10.7717/peerj.281

Kamvar, Z.N., Brooks, J.C., & Grünwald, N.J. (2015). Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality. Frontiers in Genetics, 6, 1-10. http://doi.org/10.3389%2Ffgene.2015.00208

Keenan, K., McGinnity, P., Cross, T.F., Crozier, W.W., & Prodöhl, P.A. (2013). diveRsity: An R package for the estimation of population genetics parameters and their associated errors. Methods in Ecology and Evolution. 4(8), 782-788. https://doi.org/10.1111/2041- 210X.12067

Lappi, E. (2008). La piscicoltura nella Judicaria dalle origini alla metà del ‘900. [Fish farming in Judicaria from its origins to the middle of '900.]. Tione, Italy, Centro Studi Judicaria press. Italian.

MacCrimmon, H.R. (1971). World distribution of rainbow trout (Salmo gairdneri). Journal of the Fisheries Research Board of Canada, 28(5), 663–704. http://doi.org/10.1139/f71-098

Paradis, E., Claude, J., & Strimmer, K. (2004). APE: analyses of phylogenetics and evolution in R language. Bioinformatics, 20(2), 289-290. http://doi.org/10.1093/bioinformatics/btg412

Paradis, E. (2010). pegas: an R package for population genetics with an integrated-modular approach. Bioinformatics, 26(3), 419-420. http://doi.org/10.1093/bioinformatics/btp696

Pontalti, L., & Vittori, A. (2004). Sperimentazione di miglioramento genetico su ceppi di trota iridea Oncorhynchus mykiss (Walb.). In M. Maldini, G.L. Gandolfi, & F. Nonnis-Marzano (Eds.), Proceedings of the 9° National Congress of Associazione Italiana Ittiologi Acque Dolci (pp. 181-185). Acquapartita, Italy, C.I.S.B.A. Press., 274 pp.

Pritchard, J.K., Stephens, M., & Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics, 155(2), 945–959.

R Core Team (2014). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. Retrieved from http://www.R-project.org/

Reynolds, J., Weir, B.S., & Cockerham, C. (1983). Estimation of the coancestry coefficient: basis for a short-term genetic distance. Genetics, 105(3), 767– 779.

Silverstein, J.T., Rexroad, C.E., & King, T.L. (2004). Genetic variation measured by microsatellites among three strains of domesticated rainbow trout (Oncorhynchus mykiss, Walbaum). Aquaculture Research, 35(1), 40–48. https://doi.org/10.1111/j.1365-2109.2004.00979.x

Van Oosterhout, C., Hutchinson, W.F., Wills, D.P.M., & Shipley, P. (2004). Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes, 4(3), 535–538. https://doi.org/10.1111/j.1471- 8286.2004.00684.x

Weir, B.S., & Cockerham, C. (1984). Estimating F-statistics for the analysis of population structure. Evolution, 38(6), 1358-1370. https://doi.org/10.2307/2408641
Turkish Journal of Fisheries and Aquatic Sciences-Cover
  • ISSN: 1303-2712
  • Başlangıç: 2015
  • Yayıncı: Su Ürünleri Merkez Araştırma Enstitüsü - Trabzon
Sayıdaki Diğer Makaleler

Comparison of Five Calcified Structures for Estimating the Age of Bream Abramis brama (L.) from the Irtysh River in China

Zhang ZHIMING, Ding HUIPING, Xie CONGIXIN

Changes in Growth Hormone and Cortisol Profile due to Lead Induced Toxicity in Labeo rohita

Sumera SAJJAD, Husna MALIK, Laiba SAEED, Aqsa CHAUDHARY

Effects of Alternative Oil Sources on Growth Performance, Lipid Metabolism and mRNA Level of Some Genes in Juvenile Black Sea Trout (Salmo trutta labrax Pallas,1811)

Osman Tolga ÖZEL, Eyüp ÇAKMAK, Ergin ÖZTÜRK

New Information on Deep-Sea Cephalopod Ancistroteuthis lichtensteinii (Cephalopoda: Onychoteuthidae) in the Adriatic Sea

Svjetlana Krstulovic SIFNER, Dragana BOSNJAK, Mirela PETRIC

Total Mercury in the Mangrove Oyster Crassostrea corteziensis of the Subtropical Urías Lagoon (NW Mexico)

Martin G. FRIAS ESPERICUETA, Areli VARGAS JIMENEZ, Jorge RUELAS INZUNZA, Isidro OSUNA LOPEZ, Marisela AGUILAR JUAREZ, Juan Carlos BAUTISTA COVARRABIAS, Domenico VOLTOLINA

Can Shifting Codend Mesh Shape and Mesh Size Increase the Size Selectivity of Red mullet (Mullus barbatus) in the Black Sea?

M.Hakan KAYKAÇ, Mustafa ZENGİN, Zafer TOSUNOĞLU

Effects of Three Different Dietary Binders on Juvenile Sea Cucumber, Apostichopus japonicus

Seonghun WON, Ali HAMIDOGHLI, Jin Hyeok LEE, Jinho BAE, Sungchul C. BAI

Ecological Health Assessments of 72 Streams and Rivers in Relation to Water Chemistry and Land-Use Patterns in South Korea

Mamun MAMUN, Kwang Guk AN

Growth and Feed Utilization Value of Fermented Tamarindus indica L. Seed in the Diet of Oreochromis niloticus(Linnaeus, 1758)

Abdulmalik Yusuf BASHIR, Bolanle SULEIMAN

Microsatellite-Based Genetic Diversity and Admixture History of Rainbow Trout (Oncorhynchus mykiss – Walbaum, 1792) Stocks in Trentino (Italy)

Filippo FACCENDA, Fernando LUNELLI, Andrea GANDOLFI, Riccardo BOZZI