Synthesis, antioxidant activity, molecular docking and ADME studies of novel pyrrolebenzimidazole derivatives

Synthesis, antioxidant activity, molecular docking and ADME studies of novel pyrrolebenzimidazole derivatives

Several 5-(alkylsulfonyl)-1-substituted-2-(1H-pyrrol-2-yl)-1H-benzo[d]imidazole derivatives were synthesized and their antioxidant activities were investigated using lipid peroxidation (LPO) and 7-ethoxyresorufin O-deethylase (EROD) assays. Docking analysis with Human NAD[P]H-Quinone oxidoreductase 1 (NQO1) was also performed to gather thorough information about these compounds that have antioxidant activities. Moreover, their molecular descriptors and ADME properties were calculated using the SwissADME online program. As a result, most of our compounds possessed better affinity and created ample interactions with NQO1. The most potent compound 5j had LP inhibition value of 3.73 nmol/mg/min. Other compounds exhibited moderate activity on LP levels comparing to standard butylated hydroxy toluene (BHT). However, the inhibitory effect on EROD activity was not significant.

___

  • 1. Ates-Alagoz Z, Can-Eke B, Coban T, Iscan M, Buyukbıngol E. Antioxidant properties of novel benzimidazole retinoids. Archiv der Pharmazie 2004; 337: 188-192.
  • 2. Birben E, Sahiner UM, Sackesen C, Erzurum S, Kalayci O. Oxidative stress and antioxidant defense. World Allergy Organization Journal 2012; 5 (1): 9-19.
  • 3. Ramana KV, Ayala A, Muñoz MF, Argüelles S. Lipid peroxidation: production, metabolism, and signaling mechanisms of malondialdehyde and 4-hydroxy-2-nonenal. Oxidative Medicine and Cellular Longevity 2014; 360438.
  • 4. Yin H, Libin X, Porter NA. Free radical lipid peroxidation: mechanisms and analysis. Chemical Reviews 2011; 111 (10): 5944–5972.
  • 5. Pey AL, Megarity CF, Timson DJ. NAD(P)H quinone oxidoreductase (NQO1): an enzyme which needs just enough mobility, in just the right places. Bioscience Reports 2019; 39 (1): BSR20180459.
  • 6. Faig M, Bianchet MA, Talalay P, Chen S, Winski S et al. Structures of recombinant human and mouse NAD(P)H:quinone oxidoreductases: species comparison and structural changes with substrate binding and release. Proceedings of the National Academy of Sciences of the United States of America 2000; 97 (7): 3177-3182
  • 7. Narule MN, Gaidhane MK, Gaidhane PK. Synthesis, characterization, biologically and antioxidant active of some 2-substitued 3,5-dimethyl4-ethoxy carbonyl pyrrole derivatives. Journal of Pharmacy Research 2014; 6: 626-632.
  • 8. Shanty AA, Philip JE, Sneha EJ, Prathapachandra Kurup MR, Balachandran S et al. Synthesis, characterization and biological studies of Schiff bases derived from heterocyclic moiety. Bioorganic Chemistry 2017; 70: 67-73.
  • 9. Kerimov I, Kilcigil G, Özdamar ED, Eke B, Çoban T et al. Design, one pot and microwave assisted synthesis of 2-amino/5-aryl-1,3,4- oxadiazoles bearing benzimidazole moiety as antioxidant. Archiv der Pharmazie 2012; 345 (7): 549-556.
  • 10. Kilcigil G, Alp AS, Coban T, Ozdamar ED, Eke B. Synthesis and evaluation of antioxidant properties of novel 2-[2-(4-chlorophenyl) benzimidazole-1-yl]-N-(2-arylmethylene amino) acetamides and 2-[2-(4-chlorophenyl)benzimidazole-1-yl]-N-(4-oxo-2-arylthiazolidine-3-yl) acetamides-I. Chemical Biology & Drug Design 2012; 76: 869-877.
  • 11. Ayhan-Kilcigil G, Kus C, Coban T, Ozdamar ED, Can-Eke B. Identification of a novel series of N-Phenyl-5-[(2-phenylbenzimidazol-1-yl) methyl]-1,3,4-oxadiazol-2-amines as potent antioxidants and radical scavengers. Archiv der Pharmazie 2014; 347 (4): 276-282.
  • 12. Alp AS, Kilcigil G, Ozdamar ED, Eke B. Synthesis and evaluation of antioxidant activities of novel 1,3,4-oxadiazole and imine containing 1H-benzimidazoles. Turkish Journal of Chemistry 2015; 39: 42-53.
  • 13. Iscan MY, Buyukbingol E, Iscan M, Sahin F, Safak C. Effects of 2-arylbenzimidazoles on rat hepatic microsomal monooxygenase system. Comparative Biochemistry and Physiology 1989; 92C: 109-115.
  • 14. Little PJ, Ryan AJ. Inhibitors of hepatic mixed function oxidazes. 4. Effects of benzimidazole and related compounds on aryl hydrocarbon hydroxylase activity from phenobarbitone and 3-methylcholanthrene induced rats. Journal of Medicinal Chemistry 1982; 25: 622-626.
  • 15. Dickens M, Bridges JW. The relationship between the binding of 2-n-alkylbenzimidazoles to rat hepatic microsomal cytochrome P-450 and the inhibition of monooxygenation. Biochemical Pharmacology 1982; 31: 1315-1320.
  • 16. Murray M, Ryan AJ. The binding to oxidized cytochromes P-450 and inhibition of mixed-function oxidases by aryl-substituted benzimidazoles and related compounds. Chemico-Biological Interactions 1983; 43: 341-351.
  • 17. Ates-Alagoz Z. Antioxidant activities of retinoidal benzimidazole or indole derivatives in in vitro model systems, Current Medicinal Chemistry, Special Issue “Chemistry and Biology of Antioxidants” 2013; 20 (36): 4633-4639.
  • 18. Ates Z, Can-Eke B, Suzen S, Iscan M, Buyukbingol E. Effects of a benzimidazole compound on monooxygenase activities. Farmaco 1997; 52: 703-706.
  • 19. Ates-Alagoz Z, Kus C, Coban T. Synthesis and antioxidant properties of some novel benzimidazoles containing substituted indole or 1,1,4,4-tetramethyl-1,2,3,4-tetrahydro-naphthalene fragments. Journal of Enzyme Inhibition and Medicinal Chemistry 2005; 20 (4): 325-331.
  • 20. Ates-Alagoz Z, Coleman N, Martin M, Wan A, Adejare A. In vitro anticancer properties of novel radiosensitizer analogs. Chem Biol & Drug Design 2012; 80: 853–861.
  • 21. Shavnya A, Hesp KD, Mascitti V, Smith AC. Palladium-catalyzed synthesis of (hetero)aryl alkyl sulfones from (hetero)aryl boronic acids, unactivated alkyl halides, and potassium metabisulfite. Angewandte Chemie International Edition 2015; 54: 13571-13575.
  • 22. Goker H, Alp M, Ates-Alagoz Z, Yıldız S. Synthesis and potent antifungal activity against Candida species of some novel 1H-benzimidazoles, Journal of Heterocyclic Chemistry. 2009; 46 (5): 936-948.
  • 23. Zengin-Karadayi F, Yaman M, Kisla MM, Keskus AG, Konu O et al. Design, synthesis and anticancer/antiestrogenic activities of novel indole-benzimidazoles. Bioorganic Chemistry 2020; 100.
  • 24. Zengin-Karadayi F, Yaman M, Kisla MM, Konu O, Ates-Alagoz Z. Design, synthesis, anticancer activity, molecular docking and ADME studies of novel methylsulfonyl indole-benzimidazoles in comparison with ethylsulfonyl counterparts. New Journal of Chemistry 2021; 45 (20): 9010-9019.
  • 25. Lowry OH, Rosebrough NJ, Farr AL, Randall RJJ. Protein measurement with the Folin phenol reagent. Journal of Biological Chemistry 1951; 193 (1): 265-275.
  • 26. Wills ED. Mechanisms of lipid peroxide formation in animal tissues. Biochemical Journal 1966; 99: 667–676.
  • 27. Wills ED. Lipid peroxide formation in microsomes. General considerations. Biochemical Journal 1969; 113: 333–341.
  • 28. Bishayee S, Balasubramanian AS. Lipid peroxide formation in rat brain. Journal of Neurochemistry 1971; 18: 909–920.
  • 29. Iscan M, Arinc E, Vural N, Iscan MY. In vivo effects of 3-methylcholanthrene, phenobarbital, pyrethrum and 2,4,5-T isooctylester on liver, lung and kidney microsomal mixed-function oxidase system of guinea-pig: a comparative study. Comparative Biochemistry and Physiology 1984; 77C: 177–190.
  • 30. Burke MD, Thompson S, Elcombe CR, Halpert J. Haaparanta T et al. Ethoxy, pentoxy- and benzyloxyphenoxazones and homologues: a series of substrates to distinguish between different induced cytochromes P-450. Biochemical Pharmacology 1985; 34: 3337–3345.
  • 31. Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN et al. The Protein Data Bank. Nucleic Acids Research 2000; 28: 235-242.
  • 32. Morris GM, Huey R, Lindstrom W, Sanner MF, Belew RK et al. Autodock4 and AutoDockTools4: automated docking with selective receptor flexiblity. Journal of Computational Chemistry 2009; 16: 2785-2791.
  • 33. Hanwell MD, Curtis DE, Lonie DC, Vandermeersch T, Zurek E et al. Avogadro: An advanced semantic chemical editor, visualization, and analysis platform. Journal of Cheminformatics 2012; 4: 17.
  • 34. Trott O, Olson AJ. AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization and multithreading. Journal of Computational Chemistry 2010; 31: 455-461.
  • 35. Dassault Systèmes BIOVIA, Discovery Studio Visualizer v17.2.0.16349, San Diego: Dassault Systèmes 2017.
  • 36. Daina A, Zoete V. SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules. Nature: Scientific Reports 2017; 7 (1): 42717.
  • 37. Daina A, Zoete V. A BOILED-Egg to predict gastrointestinal absorption and brain penetration of small molecules. ChemMedChem 2016; 11 (11): 1117-1121.
  • 38. Bell EW, Zhang Y. DockRMSD: an open-source tool for atom mapping and RMSD calculation of symmetric molecules through graph isomorphism. Journal of Cheminformatics 2019; 11: 40.
  • 39. O’Boyle NM, Banck M, James CA, Morley C, Vandermeersch T, Hutchison GR. OpenBabel: An open chemical toolbox. Journal of Cheminformatics 2011; 3: 33.
  • 40. Castro-Alvarez A, Costa AM, Vilarrasa J. The performance of several docking programs at reproducing protein-macrolide-like crystal structures. Molecules 2017; 22 (1): 136.
  • 41. Desai PV, Raub TJ, Blanco MJ. How hydrogen bonds impact P-glycoprotein transport and permeability. Bioorganic & Medicinal Chemistry Letters 2012; 22 (21): 6540-8.
  • 42. Mullard A. Re-assessing the rule of 5, two decades on. Nature Reviews Drug Discovery 2018; 17: 777.
  • 43. Lipinski CA, Lombardo F, Dominy BW, Feeney PJ. Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Advanced Drug Delivery Reviews 2001; 46 (1–3): 3–26.
  • 44. Muegge I, Heald SL, Brittelli D. Simple selection criteria for drug-like chemical matter. Journal of Medicinal Chemistry 2001; 44 (12): 1841-6.
  • 45. Teague S, Davis A, Leeson P, Oprea, T. The design of leadlike combinatorial libraries. Angewandte Chemie International Edition England 1999; 38: 3743–3748.
Turkish Journal of Chemistry-Cover
  • ISSN: 1300-0527
  • Yayın Aralığı: Yılda 6 Sayı
  • Yayıncı: TÜBİTAK
Sayıdaki Diğer Makaleler

Computational investigation of unsaturated ketone derivatives as MAO-B inhibitors by using QSAR, ADME/Tox, molecular docking, and molecular dynamics simulations

Fouad KHALIL, Mohammed BOUACHRINE, Abdellah EL AISSOUQ, Abdelkrim OUAMMOU

A systematic review of RdRp of SARS-CoV-2 through artificial intelligence and machine learning utilizing structure-based drug design strategy

Fariha IMTIAZ, Mustafa Kamal PASHA

Development and validation of a new RP-HPLC method for organic explosive compounds

Salih Murat ÜNSAL, Emre ERKAN

Synthesis, predictions of drug-likeness, and pharmacokinetic properties of some chiral thioureas as potent enzyme inhibition agents

Yusuf SICAK

Ultrafiltration-based sample preparation and HPLC-UV determination of diclofenac in human plasma samples

Göksel ARLİ, Mustafa Sinan KAYNAK, Murat SOYSEVEN, Hassan Y. ABOUL ENEIN, Mustafa ÇELEBİER, Ayşegül DOĞAN, Merve NENNİ

Electroanalytical investigation and voltammetric quantification of antiviral drug favipiravir in the pharmaceutical formulation and urine sample using a glassy carbon electrode in anionic surfactant media

Zühre ŞENTÜRK, Zeynep AKÇA, Yavuz YARDIM, Hande İzem ÖZOK

An experimental and theoretical analysis of supercritical carbon dioxide extraction of Cu(II) and Pb(II) ions in the form of dithizone bidentate complexes

Avni BERISHA, Jeton HALILI

A new study of dynamic mechanical analysis and the microstructure of polyurethane foams filled

Noureddine BOUMDOUHA, Achraf BOUDIAF, Zitouni SAFIDINE

Synthesis of a novel antiweathering nanocomposite superhydrophobic room temperature vulcanized (RTV) silicon rubber enhanced with nanosilica for coating high voltage insulators

Khalid K. ABBAS, Mayyadah S. ABED, Ali F. JASIM

Induction of lutein production in Scenedesmus obliquus under different culture conditions prior to its semipreparative isolation

Ayşegül ERDOĞAN, Ayça Büşra KARATAŞ, Zeliha DEMİREL, Meltem CONK DALAY