Systematic placement of the Turkish endemic genus Ekimia (Apiaceae) based on morphological and molecular data
The systematic position of the monotypic genus Ekimia H.Duman and M.F.Watson (Apiaceae), a narrow endemic to Turkey, was evaluated on the basis of morphological data and nrDNA ITS sequences. Ekimia bornmuelleri (Hub.-Mor. And Reese) H.Duman and M.F.Watson was initially described in Prangos Lindl. Due to the unique fruit morphology uncommon for this genus it was later shifted to an independent genus. In the Bayesian and most parsimonious trees, E. Bornmuelleri is sister to Laserpitium petrophilum Boiss. And Heldr and Laserpitium glaucum Post within the Daucinae clade. This result is consistent with its morphology: the presence of the primary and secondary ribs of E. Bornmuelleri fruits brings the species closer to Laserpitium rather than Prangos.
Systematic placement of the Turkish endemic genus Ekimia (Apiaceae) based on morphological and molecular data
The systematic position of the monotypic genus Ekimia H.Duman and M.F.Watson (Apiaceae), a narrow endemic to Turkey, was evaluated on the basis of morphological data and nrDNA ITS sequences. Ekimia bornmuelleri (Hub.-Mor. And Reese) H.Duman and M.F.Watson was initially described in Prangos Lindl. Due to the unique fruit morphology uncommon for this genus it was later shifted to an independent genus. In the Bayesian and most parsimonious trees, E. Bornmuelleri is sister to Laserpitium petrophilum Boiss. And Heldr and Laserpitium glaucum Post within the Daucinae clade. This result is consistent with its morphology: the presence of the primary and secondary ribs of E. Bornmuelleri fruits brings the species closer to Laserpitium rather than Prangos.
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- Downie SR, Spalik K, Katz-Downie DS, Deborah S, Reduron J-P (2010). Major clades within Apiaceae subfamily Apioideae as inferred by phylogenetic analysis of nrDNA ITS sequences. Plant Syst Evol 128: 111–136.
- Duman H, Watson MF (1999). Ekimia, a new genus of Umbelliferae, and two new taxa of Prangos Lindl. (Umbelliferae) from southern Turkey. Edinburgh Journal of Botany 56: 199–209.
- Edgar RC (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792– 1797.
- Erdmann B, Hoffann P, Wiedenroth EM (1986). Changes in the root system of wheat seedlings following root anaerobiosis I. Anatomy and respiration in Triticum aestivum L. Ann Bot 58: 597–605.
- Ericson P, Svennblad B, Britton T, Oxelman B (2003). Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. Systematic Biol 52: 665–673.
- Felsenstein J (1985). Confidence limits on phylogenetics: an approach using the bootstrap. Evolution 39: 783–791.
- Hall TA (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucl Acid S 41: 95–98.
- Herrnstadt I, Heyn CC (1972). Prangos Lindl. In: Davis PH, editor. Flora of Turkey and the East Aegean Islands. Vol. 4. Edinburgh, Scotland: University Press, pp. 382–388.
- Herrnstadt I, Heyn CC (1977). A monographic study of the genus Prangos (Umbelliferae). Boissiera 26: 1–91.
- Huber-Morath A (1945). Novitae Elorae Anatolicae IV. Candollea 10: 147–154 (article in German).
- Kljuykov EV, Liu M, Ostroumova TA, Pimenov MG, Tilney PM, van Wyk B-E (2004). Towards a standardized terminology for taxonomically important morphological characters in the Umbelliferae. S Afr J Bot 70: 488–496.
- Kress WJ, Prince LM, Williams KJ (2002). The phylogeny and a new classification of the gingers (Zingiberaceae): evidence from molecular data. Am J Bot 89: 1682–1696.
- Nylander JAA (2004). MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.
- Nylander JAA, Wilgenbusch JC, Warren DL, Swofford DL (2008). AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24: 581–583.
- Ostroumova TA, Pimenov MG, Ukrainskaja UA (2010). Micromorphological diversity of hairs and emergences on fruits in the Umbelliferae and its taxonomic value. Botanicheskii Zhurnal 95: 1219–1231 (article in Russian with an abstract in English).
- Page RDM (1996). TREEVIEW: An application to display phylogenetic trees on personal computers. Comput Appl Biosci 12: 357–358.
- Pehlivan S, Başer B, Cabi E (2009). Pollen morphology of 10 taxa belonging to Prangos Lindl. and Ekimia H. Duman & M.F. Watson (Umbelliferae) from Turkey and its taxonomic significance. Bangl J Plant Taxon 16: 165–174.
- Rambaut A, Drummond AJ (2007). Tracer. Website: http://beast.bio. ed.ac.uk/tracer [accessed 22 September 2014].
- Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP (2012). MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice across a Large Model Space. Systematic Biol 61: 539–542.
- Spalik K, Downie SR (2007). Intercontinental disjunctions in Cryptotaenia (Apiaceae, Oenantheae): an appraisal using molecular data. J Biogeogr 34: 2039–2054.
- Swofford DL (2003). PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods): Version 4. Sunderland, MA, USA: Sinauer Associates.
- Valiejo-Roman CM, Terentieva EI, Samigullin TH, Pimenov MG (2002). Relationships among genera in Saniculoideae and selected Apioideae (Umbelliferae) inferred from nrITS sequences. Taxon 51: 91–101. 1