Determination of genetic relationships among Velezia L. (Caryophyllaceae) species using RAPD markers

Bu çalışmada, RAPD (Random Amplified Polymorphic DNA) belirteçleri Türkiye’de yetişen Velezia L. türlerinin genetik akrabalık seviyelerini belirlemede kullanılmıştır. 14 RAPD primerinden, toplam 432 bant elde edilmiştir. RAPD belirteçlerindeki polimorfizm oranı yüksek (% 98,6) ve her türü ayırt etmek için yeterlidir. Paylaşılan ortak bant seviyesi türler arasındaki genetik benzerliği değerlendirmek ve UPGMA (unweighted pair group method with arithmetic mean) tabanlı bir dendrogram oluşturmak için kullanılmıştır. Türler arasındaki genetik akrabalıkların, morfolojik karakterlerin kullanımıyla elde edilen verilerle tamamen uyumlu olduğu bulunmuştur. Elde edilen sonuçlar RAPD tekniğinin Velezia türleri arasındaki genetik akrabalıkların belirlenmesinde olduğu kadar türlerin tanımlanmasında da başarıyla kullanılabileceğini göstermiştir. Ayrıca bu teknik gelecekteki çalışmalarda, özellikle tehlike altındaki Velezia türlerinin korunması için ön verileri sağlamada etkin olarak kullanılabilir.

RAPD markörleri kullanılarak Velezia L. (Caryophyllaceae) türlerinin genetik akrabalıklarının belirlenmesi

Random amplified polymorphic DNA (RAPD) markers were used to determine genetic relationships among Velezia L. species from Turkey. A total of 432 amplified bands were obtained using 14 RAPD primers. The polymorphism in RAPD markers was high (98.61%) and was sufficient to distinguish each species. The degree of band-sharing was used for evaluating the genetic similarity between species and for constructing a dendrogram by the unweighted pair group method with arithmetic mean (UPGMA). Genetic relationships among the species were found to be fully consistent with those obtained by the use of morphological characters. Data obtained from our study demonstrated that the RAPD technique could be successfully used for the determination of genetic relationships among Velezia species and for species identification. Furthermore, it can be efficiently employed in future studies to provide preliminary data for conservation of endangered Velezia species.

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  • 1. Davis PH. Flora of Turkey and the East Aegean Islands. Edinburgh University Press. Edinburgh; 1967.
  • 2. Poyraz İE. Revision of Genus Velezia L. (Caryophyllaceae) in Turkey, PhD, Eskişehir Osmangazi University Institute of Science, 2008.
  • 3. Viccini LF, Souza da Costa DC, Machado MA et al. Genetic diversity among nine species of Lippia (Verbenaceae) based on RAPD markers. Plant Syst Evol 246: 1-8, 2004.
  • 4. Ray T, Roy SC. Phylogenetic relationships between members of Amaranthaceae and Chenopodiaceae of Lower Gangetic Plains using RAPD and ISSR markers. Bangladesh J Bot 36: 21-28, 2007.
  • 5. Bardakçı F. Random amplified polymorphic DNA (RAPD) markers. Turk J Biol 25: 185-196, 2001.
  • 6. Williams JGK, Kubelik AR, Livak KJ et al. DNA polymorphisms amplifi ed by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18: 6531-6535, 1990.
  • 7. Hadrys H, Balick M, Schierwater B. Applications of random amplified polymorphic DNA (RAPD) in molecular ecology. Mol Ecol 1: 55-63, 1992.
  • 8. Rieseberg LH. Homology among RAPD fragments in interspecifi c comparisons. Mol Ecol 5: 99-105, 1996.
  • 9. Bachmann K. Nuclear DNA markers in plant biosystematic research. Opera Bot 132: 137-148, 1997.
  • 10. Açık L, Ekici M, Çelebi A. Taxonomic relationships in Astragalus sections Hololeuce and Synochreati (Fabaceae): evidence from RAPD-PCR and SDS-PAGE of seed proteins. Ann Bot Fenn 41: 305-317, 2004.
  • 11. Goh MWK, Kumar PP, Lim SH et al. Random amplified polymorphic DNA analysis of the moth orchids, Phalaenopsis (Epidendroideae: Orchidaceae). Euphytica 141: 11-22, 2005.
  • 12. Mattagajasingh I, Mukherjeea AK, Dasa P. Genomic relations among 31 species of Mammillaria Haworth (Cactaceae) using random amplified polymorphic DNA. Z Naturforsch 61c: 583- 591, 2006.
  • 13. Chaudhary LB, Rana TS, Narzary D et al. A new species of Astragalus L. (Leguminosae) from India based on morphological and molecular markers. Bot J Linn Soc 154: 27- 34, 2007.
  • 14. Pendleton RL, Kitchen SG, Mudge J et al. Origin of the flax cultivar ‘Appar’ and its position within the Linum perene complex. Int J Plant Sci 169: 445-453, 2008.
  • 15. Çelebi A, Açık L, Aytaç Z. Biosystematics studies among Ebenus L. species based on morphological, RAPD-PCR, and seed protein analyses in Turkey. Pak J Bot 41: 2477-2486, 2009.
  • 16. Mahmood T, Muhammad S, Shinwari ZK. Molecular and morphological characterization of Caralluma species. Pak J Bot 42: 1163-1171, 2010.
  • 17. Aliyev RT, Abbasov MA, Mammadow AC. Genetic identifi cation of diploid and tetraploid wheat species with RAPD markers. Turk J Biol 31: 173-180, 2007.
  • 18. Doyle JJ, Doyle JL. Isolation of plant DNA from fresh tissue. Focus 12: 13-15, 1990.
  • 19. Jaccard P. Nouvelles recherches sur la distribution florale. Bull Soc Vaud Nat 44: 223-270, 1908.
  • 20. Hampl V, Pavlícek A, Flegr J. Construction and bootstrap analysis of DNA fingerprinting-based phylogenetic trees with a freeware program FreeTree: application to trichomonad parasites. Int J Syst Evol Micr 51: 731-735, 2001.
  • 21. Fior S, Karis PO, Casazza G et al. Molecular phylogeny of the Caryophyllaceae (Caryophyllales) inferred from chloroplast matK and nuclear rDNA ITS sequences. Am J Bot 93: 399-411, 2006.
  • 22. Frajman B, Eggens F, Oxelman B. Hybrid origins and homoploid reticulate evolution within Heliosperma (Sileneae, Caryophyllaceae): a multigene phylogenetic approach with relative dating. Syst Biol 58: 328-345, 2009.
  • 23. Kool A, Bengtson A, Thulin M. Polyphyly of Polycarpon (Caryophyllaceae) inferred from DNA sequence data. Taxon 56: 775-782, 2007.
  • 24. Fior S, Karis PO. Phylogeny, evolution, and systematics of Moehringia (Caryophyllaceae) as inferred from molecular and morphological data: a case of homology reassessment. Cladistics 23: 362-372, 2007.
  • 25. Scheen AC, Brochmann C, Brysting AK et al. Northern hemisphere biogeography of Cerastium (Caryophyllaceae): insights from phylogenetic analysis of noncoding plastidnucleotide sequences. Am J Bot 91: 943-952, 2004.
  • 26. Rautenberg A, Hathaway L, Oxelman B et al. Geographic and phylogenetic patterns in Silene section Melandrium (Caryophyllaceae) as inferred from chloroplast and nuclear DNA sequences. Mol Phylogenet Evol 57: 978-991, 2010.
  • 27. Fu XP, Ning GG, Gao LP et al. Genetic diversity of Dianthus accessions as assessed using 2 molecular marker systems (SRAPs and ISSRs) and morphological traits. Sci Hortic 117: 263-270, 2008.
  • 28. Aksoy N, Göktürk S, Açık L et al. Cephalaria duzceënsis (Dipsacaceae), a new species from the western Black Sea region, Turkey. Nordic J Bot 25: 64-69, 2007.
  • 29. Sheidai M, Gholipou A, Noormohammadi Z. Species relationship in the genus Silene L. section Auriculatae (Caryophyllaceae) based on morphology and RAPD analyses. Acta Biol Szeged 54: 25-31, 2010.
  • 30. Maki M, Horie S. Random amplified polymorphic DNA (RAPD) markers reveal less genetic variation in the endangered plant Cerastium fischerianum var. molle than in the widespread conspecific C. fischerianum var. fischerianum (Caryophyllaceae). Mol Ecol 8: 145-150, 1999.
  • 31. Sapir Y, Shmida A, Fragman O. Constructing Red Numbers for setting conservation priorities of endangered plant species: Israeli flora as a test case. J Nat Conserv 11: 91-107, 2003.
Turkish Journal of Biology-Cover
  • ISSN: 1300-0152
  • Yayın Aralığı: Yılda 6 Sayı
  • Yayıncı: TÜBİTAK
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