Smart biologics for crop protection in agricultural systems

Crop losses caused by insects, pests, and pathogens remain one of the major problems in sustainable agriculture. Environmental and health concerns regarding the overuse of pesticides, and the impacts of climate change on epidemics are immediate pressing issues. In addition, the breakdown of plant resistance by pathogen populations brings limitations to the genetic control of diseases. Biologics can be effective in all types of agricultural systems including organic, sustainable, and conventional. Beneficial microorganisms including Bacillus and Trichoderma species have been employed as environmentally safe biopesticides. Molecular and proteomic studies on biopesticides have revealed the nature of antibiotics, secreted enzymes, and inhibitory compounds. This review focuses on the current knowledge regarding biological agents and their metabolites including quorum-sensing molecules and volatile compounds, and how they can be used in pest and disease management programs.

Smart biologics for crop protection in agricultural systems

Crop losses caused by insects, pests, and pathogens remain one of the major problems in sustainable agriculture. Environmental and health concerns regarding the overuse of pesticides, and the impacts of climate change on epidemics are immediate pressing issues. In addition, the breakdown of plant resistance by pathogen populations brings limitations to the genetic control of diseases. Biologics can be effective in all types of agricultural systems including organic, sustainable, and conventional. Beneficial microorganisms including Bacillus and Trichoderma species have been employed as environmentally safe biopesticides. Molecular and proteomic studies on biopesticides have revealed the nature of antibiotics, secreted enzymes, and inhibitory compounds. This review focuses on the current knowledge regarding biological agents and their metabolites including quorum-sensing molecules and volatile compounds, and how they can be used in pest and disease management programs.

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  • Madhaiyan et al. (2006)
  • Bacillus circulans DUC1, B. firmus DUC2, B.
  • Root and shoot elongation globisporus DUC3 Ghosh et al. (2003)
  • Pseudomonas sp. Bradyrhizobium sp. Promoted nodulation
  • Shaharoona et al. (2006) Antibiotics Fusarium oxysporum
  • Koumoutsi et al. (2004)
  • Lysobacter sp. strain SB-K88
  • Aphanomyces cochlioides Islam et al. (2005) B. subtilis QST713
  • Botrytis cinerea and R. Solani
  • Paulitz and Belanger (2001),
  • Kloepper et al. (2004) B. subtilis BBG100
  • Pythium aphanidermatum
  • Leclere et al. (2005)
  • P. fluorescens 2-79 and 30-84
  • Gaeumannomyces graminis var. tritici
  • Thomashow et al. (1990)
  • Bacillus subtilis, EU07 Fusarium oxysporum f. sp. radicis
  • Baysal et al. (2008; 2013) lycopersici
  • Pseudomonas fluorescens strain CHA0
  • Peronospora parasitica
  • Iavicoli et al. (2003) Lytic enzymes such
  • as chitinases and proteases Fusarium udum
  • Rangeshwaran and Prasad (2000) T. harzianum
  • Penicillium expansum Batta (2004) B. subtilis
  • Fusarium oxysporum f. sp. radicis
  • Baysal et al. (2008; 2013) lycopersici
  • Volatile organic compounds 2,3-butanediol
  • Ryu et al. (2004) Pseudomonas
  • Putida WCS 358, BTP1 Lipopolysaccharide, Siderophore, Z,3- hexenal
  • Meziane et al. (2005)
  • Ongena et al. (2004)
  • Bacillus subtilis EU07
  • 2,3-butanediol, acetoin
  • Baysal et al. (2013)
  • Bacillus pumilus 203-6
  • Peroxidase, β-1,3-glucanase
  • Bargabus et al. (2004) Phages
  • Isolated and characterized in vitro for Boulé et al. (2011)
  • control of E. amylovora.
  • In greenhouse trials, pretreatment of tomato
  • seedlings with RSL1 prevented bacterial wilt in all plants Isolated and partly characterized in
  • vitro for control of R. solanecearum.
  • In addition to microbes, phytopathogen-specific
  • phages have potential for biocontrol. It is necessary to test
  • their efficacy in relation to plant disease before scaling up
  • phage preparations, which requires knowledge about the
  • characteristics and lifestyle of the phages (Ackermann et
  • al., 2004). The table summarizes the results of phage trials
  • that have been performed on a range of phytopathogens
  • including Erwinia amylovora and Ralstonia solanacearum.
  • However, field trials are biologically complex and the
  • presence of other microbes and pathogens can influence
  • the effectiveness of the phages when introduced into fields
  • (Adriaenssens et al., 2012). 9. Conclusion
  • Soils are, to some extent, living laboratories where the
  • complex interactions between microorganisms result
  • in disease suppression. Characterization of biological
  • communities in soil has proved to be a formidable challenge,
  • and the nature of disease-suppressive soils remains
  • largely an enigma. Suppressive soils have nevertheless
  • proved to be sources of some important antagonists and
  • they continue to provide important information about
  • biocontrol mechanisms and biocontrol strategies.
  • Several biocontrol products are now in widespread
  • use in plant protection. Of the hundreds of pesticides
  • registered by the EU and the US, half are biopesticides,
  • including several microbial biopesticides for plant disease
  • control. There has been a proliferation of many small
  • companies interested in bringing new biocontrol products
  • to the marketplace and many are in collaboration with
  • university researchers and scientists to develop practical
  • alternatives to chemical pesticides.
  • In conclusion, successful application of biological
  • control strategies requires more knowledge-intensive
  • management. Understanding when and where the
  • biological control of plant pathogens can be profitable
  • requires an appreciation of its place within IPM systems
  • (Santoyo et al., 2012). Newer technologies that directly
  • incorporate genes into biologics’ genomes, commonly
  • referred to as genetic modification or genetic engineering,
  • are bringing new traits into biocontrol agents and
  • biologically based products, such as microbial fungicides,
  • that can be used to interfere with pathogen activities.
  • Registered biofungicides are generally labeled with short
  • reentry intervals and pre-harvest intervals, giving greater
  • flexibility to growers. When living microorganisms having
  • a prominent effect on target pathogens are introduced,
  • they may also augment natural beneficial populations
  • to further reduce the damage caused by pathogens and
  • increase plant fitness (Han et al., 2013).
  • The use of advanced analytical tools and techniques
  • including transcriptomics, proteomics, and metabolomics
  • will continue to provide new insights into biologics, their
  • mode of action, and their impact on the rhizospheric
  • microbiota. It seems possible that in the near future
  • inhibitory compounds may be mass produced by
  • microorganisms with the required properties and used
  • as replacements for the pesticides which are currently employed.
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