Genetic Diversity of Some Tomato Cultivars and Breeding Lines Commonly Used in Pakistani Breeding Program

Genetic diversity present in gene pool is an important determination for breeding programs, and characterization is useful of building crop plant collections primarily based on the knowledge of the presence of valuable genes and traits. Developing successful varieties for increasing the future yield and quality of tomato depend mainly on the genetic diversity of parents used in the breeding program. Molecular characterization of 21 tomato genotypes used in in Pakistani breeding program was studied using random amplified polymorphic DNA (RAPD) markers. Total 102 bands were amplified among 21 genotypes using 20 RAPD primers. Overall 73.5% polymorphism was shown as 75 out of 102 loci were polymorphic. High degree of divergence between varieties was indicated by low level of monomorphic bands. The number of PCR products per primer varied from 2-8 with an average of 5.1 bands per primer. Primer GL J-20 and GL C-09 produced maximum number of bands whereas the primers GL A-09 produced the lowest. The polymorphism per RAPD primer ranged from 50% to 100% with an average of 73.5%. The accumulative analysis of amplified products generated by RAPD’s was enough to assess the genetic diversity among the genotypes. The information would be helpful for formulating future breeding and genome mapping programs. This study will also work as an indicator for tomato breeders to evolve varieties with genetic diverse back ground to achieve sustainability in tomato production in the country.

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Alsaleh A, Baloch FS, Derya M, Azrak M, Kilian B, Özkan H, Nachit M. 2014. Genetic Linkage Map of Anatolian Durum Wheat Derived from a Cross of Kunduru-1149× Cham1. Plant Mol Biol Rep 1-12. DOI 10.1007/s11105-014-0749-6

Andeden EE, Yediay FE, Baloch FS, Shaaf S, Kilian B, Nachit M, Özkan H. 2011. Distribution of vernalization and photoperiod genes (Vrn-A1, Vrn-B1, Vrn-D1, Vrn-B3, PpdD1) in Turkish bread wheat cultivars and landraces. Cereal Res Commun 39: 352-364

Andeden EE, Baloch FS, Derya M, Kilian B, Ozkan H. 2012. iPBS-Retrotransposons-based genetic diversity and relationship among wild annual Cicer species. J Plant Biochem Biotechnol 57: 119-129. DOI 10.1007/s13562- 012-0175-5.

Anonymous. 2011. Agricultural Statistics of Pakistan.Government of Pakistan.Ministry of Food, Agriculture and Livestock Islamabad. Anonymous. 2013. FAO statistics Division. http://faostat.fao.org.

Archak S, Karihaloo JL, Jain A. 2002. RAPD markers reveal narrowing genetic base of Indian tomato cultivars. Cur Sci 82: 1139-1143.

Baloch FS, Kurt C, Arıoğlu H, Ozkan H. 2010. Assaying of diversity among soybean (Glycinmax (L.) Merr.) and peanut (Arachishypogaea L.) genotypes at DNA level. Turk J Agric For 34: 285–301.

Carelli BP, Gerald LTS, Grazziotin FG, Echeverrigaray S. 2006. Genetic diversity among Brazilian cultivars and landraces of tomato Lycopersicon esculentum Mill.revealed by RAPD markers. Euphytica 105: 205-210.

Chapeo W, Ashton NW, Martel PK, Antonishyn N, Crosby NW. 1992. A feasibility study of the use of random amplified polymorphic DNA in the population genetics and systematics of grass hoppers. Genome 35: 241-144.

Cheng KT, Hsien CC, Ching SH, Feng HL. 1997. Identification of dried rhizomes of coptis species using random amplified polymorphic DNA. Bot Bull Acad Sin 38: 241-244.

Comertpay G, Baloch FS, Kilian B, Ulger AC, Ozkan H. 2012. Diversity assessment of Turkish Maize lanraces base on fluorescent labelled SSR markers. Plant Mol Bio Rep 30: 261-274.

Demeke T, Lynch DR, Kawchuk LM, Kozub GC, Armstrong JD. 1996. Genetic diversity of potato determined by random amplified polymorphic DNA analysis. Plant Cell Rep 15: 662-667.

Denis AS, Richard JH, Chris RM. 2005. Biological consequences of ecosystem fragmentation. Soci Bio Cons 5: 18-32.

Dhaliwal MS, Singh S, Cheema DS. 2003. Line x testeranalysis for yield and processing attributes in tomato. J Res 40: 49- 53.

Doyle JJ, Doyle JL. 1990. Isolation of plant DNA from fresh tissue. Focus 12: 13–15.

Egashira H, Ishihara H, Takashina T, Imanishi S. 2000. Genetic diversity of the ‘peruvianum- complex’ (Lycopersicon peruvianum L.) Mill. and (L. chilense Dun.)revealed by RAPD analysis. Euphytica 116: 23-31.

Ercolano MR, Sebastiano A, Monti L, Frusciante L, Barone A. 2005. Molecular characterization of Solanum habrochaites accessions. J Genet Breed 59: 15-20.

Erlich A, Gelfand D, Sninsky JJ. 1991. Recent advances in polymerase chain reaction. Sci 252- 1643.

Georgelis N, Scott J, Baldwin E. 2004. Relationship of tomato fruit sugar concentration with physical and chemical traits and linkage of RAPD markers. J Ameri Soci Hort Sci 129: 839-845.

Gepts P. 1993. The use of molecular and biomolecular markers in crop-evaluation studies. In: M.K. Hecht (Ed), Evol Biol 27: 51-94.

Haishan Z, Hong Z, Kun M, Ming LH, Tao, Yun LW. 2004. The genetic diversity of Yunnan local varieties and wild species of tomato. J Yun Agri Uni., 19: 373-377.

Hossain MM, Khalequzzaman KM, Hossain, MA, Mollah MRA, Siddique MA. 2004. Influence of planting time on the extension of picking period of four Tomato varieties. J Biol Sci., 4: 616‐619

Huh KM, Sun JY, Sun CK. 2011. Identification and genetic diversity of Korean tomato cultivars by RAPD markers J Li Sci 21: 15-21

Karp , Kresovich S, Bhat KV, Ayad WG, Hodgkin T. 1997. Molecular tools in plant genetic resources conservation: a guide to the technologies In: IPGRI Technical Bull, No 2 International Plant Genetic Resources Institute, Rome, Italy

Knapp S, Bohs L, Nee M, Spooner DM. 2004. Solanaceae – a model for linking genomics with bio diversity Comp Funct Geno 5: 285–291

Klocke E, 2004. Variation in some Lycopersicon esculentum and Capsicum annuum Cultivars revealed by RAPD and AFLP Markers Guan Sci., 11: 249-257

Landry BS, Dextraze L, Boivin G. 1993. Random Amplified Polymorphic DNA markers for DNA fingerprinting and genetic variability assessment of minute parasitic wasp species (Hymenoptera: and trichogrammatidae) used in biological control programs of phytophagous insects Genome 36: 580-587

Liu LW, Wang Y, Gong YQ, Zhao TM, Liu G, Li XY, Yu FM. 2007. Assessment of genetic purity of tomato (Lycopersicon esculentum L) hybrid using molecular markers Sci Hort 115: 499-507

Manoj K, Deshpande U. 2006. RAPD based fingerprinting of tomato genotypes for identification of mutant and wild cherry specific markers J P Sci. 1: 192-200

Meng FJ, Xu XU, Huang FL, Li JF. 2010. Analysis of genetic diversity in cultivated and wild tomato varieties in Chinese market by RAPD and SSR Agri Sci China 9: 1430-1437 Miller JC, Tanksley SD. 1990. RFLP analysis of phylogenetic relationships and variation in the genusLycopersicon. Theor Appl Genet 80: 437-448

Mirshamsi A, Farsi M, Shahriari F, Nemati H. 2008. Use of random amplified polymorphic DNA markers to estimate heterosis and combining ability in tomato hybrids Pak J Bio Sci 11: 499-507

Morris PF, Connolly MS, Clair DS. 2000. Genetic diversity of Alternaria alternata isolated from tomato in California assessed using RAPDs Myco Res 104: 286-292

Mullis KB (1990) Unusual origin of polymerase chain reaction Scientific American 262: 56-65

Naz S, Zafrullah A, Shahzadhi K, Munir N. 2013. Assesment of genetic diversity within germplasm accession in tomato using morphological and molecular markers J Ani Pl Sci. 23: 1099-1106

Noli E, Conti S, Maccaferri M, Sanguineti MC. 1999. Molecular characterization of tomato cultivars Seed Sci Tech 27: 1-10 Phan AT, Fu YB, Smith Jr SR. 2003. RAPD variation in selected and unselected blue grama populations Crop Sci. 43: 1852-1857

Rafalski JA, Tingey SV. 1993. Genetic diagnostics in plant breeding: RAPDs, microsatellites and machines Trends Genet 9: 275–280

Rao NK. 2004. Plant genetic resources: advancing conservation anduse through biotechnology Afr J Biotechnol 3: 136–145

Saeed A, Hovsepyan H, Darvishzadeh R, Imtiaz M, Panguluri SK, Nazaryan R. 2011. Genetic diversity of Iranian accession, improved lines of chickpea (Cicer arietinum L) and their wild relatives using simple sequence repeats Plant Mol Biol Rep doi: 101007/s11105-011-0294-5

Saliba CV, Causse M, Gervais L, Philouze J. 2000. Efficiency of RFLP, RAPD, and AFLP markers for the construction of an intraspecific map of the tomato genome. Genome 43: 29-40

Sharifova S, Mehdiyeva S, Theodorikas K, Roubos K. 2013. Assesment of genetic diversity in cultivated tomato (Solanum Lycopersicum L) genotypes using RAPD primers J Hort Research 21: 83-89

Sharma SS, Negi MS, Sinha P, Kumar K, Tripathi SB. 2011. Assessment of genetic diversity of biodiesel species pongamiapinnata accessions using AFLP and three endonuclease-AFLP. Plant Mol Biol Rep. 29: 12–18

Tabassum N, Sony SK, Bhajan SK, NurulIslam M. 2013. Analysis of genetic diversity in eleven tomato (Lycopersicon esculentum Mill) varieties using RAPD markers P Tissue Cult Biotech 23: 49-57

Villand J, Skroch PW, Lai T, Hanson P, Kuo CG, Nienhuis J. 1998. Genetic variation among tomato accessions from primary and secondary centers of diversity Crop Sci. 38: 1339-1347 Weising K, Nybom H, Wolff L, Meyer W. 1995. DNA Fingerprinting in Plants and Fungi CRC Press, Boca Raton, Florida

Welsh J, McClelland M. 1990. Finger printing genome using PCR with arbitrary primers Nucleic Acid Res 18: 7213- 7218

Williams JKF, Kubelik AR, Livak KG, Rafalki JA, Tingey SV. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers Nucl Acid Res 18: 6531-6535

Williams CE, Clair DA. 1993. Phenotypic relationships and levels of variability detected by restriction fragment length polymorphism and random amplified polymorphic DNA analysis of cultivated and wild accessions of Lycopersicon esculentum Genome 36: 619-630

Yediay FE, Andeden EE, Baloch FS, Börner A, Kilian B, Özkan H. 2010. The allelic state at the major semi-dwarfinggenes in a panel of Turkish bread wheatcultivars and landraces Plant Genet Resour: Characterization and Utilization 9: 423–429

Yeh FC, Yang R, Boyle TJ, Ye Z, Xiyan JM. 2000. Popgen 32, Microsoftware, windows based freeware for population genetic analysis Molecular biology and biotechnology center, University of Alberta, Edmonton, Canada
Türk Tarım - Gıda Bilim ve Teknoloji dergisi-Cover
  • ISSN: 2148-127X
  • Yayın Aralığı: Aylık
  • Başlangıç: 2013
  • Yayıncı: Turkish Science and Technology Publishing (TURSTEP)