Dizi Seçimli DNA Hibridizasyonu için İmpedimetrik Nanobiyosensör

Altın nanopartiküller (AuNPs) ile zenginleştirilmiş 5-amino-2-mercapto-1,3,4-thidiazole (AMT) modifiye impedimetrik sensörler, Hepatit B virüsüne (HBV) ilişkin dizi seçimli DNA hibridizasyonunun elektrokimyasal olarak izlenmesi için geliştirilmiştir. AMT-AuNP-PGE ler daha fazla miktarda DNA’nın AMT-AuNPs-PGE yüzeyine bağlanması için uygun bir yüzey sağlamış ve daha tekrarlanabilir impedimetrik sinyaller vermiştir. AMT-AuNP ile modifiye edilmiş DNA biyosensörlerin seçimliliği, hedef DNA, veya diğer DNA dizileri; rastgele dizi (NC), mutasyonlu dizi (MM) varlığında test edilmiştir. Tayin sınırı 86 µg/mL olarak hesaplanmıştır.

Impedimetric Nanobiosensor for the Detection of Sequence-Selective DNA Hybridization

5-amino-2-mercapto-1,3,4-thidiazole (AMT) enriched gold nanoparticles (AuNPs) modified impedimetric sensors were developed for the electrochemical monitoring of sequence-selective DNA hybridization related to Hepatitis B virus (HBV). AMT-AuNP-PGEs presented more repeatable impedimetric responses and provided a suitable surface for more DNA binding onto AMT-AuNPs-PGE surface. The selectivity of DNA biosensor modified with AMT-AuNP was investigated in the presence of target DNA, or the other DNA sequences; e.g, noncomplementary (NC), or mismatch (MM) DNA sequences. The detection limit was calculated as 0.86 µg/mL.

___

  • H. Chen, C. Jiang, C. Yu, S. Zhang, B. Liu, J. Kong, Protein chips and nanomaterials for application in tumor marker immunoassays, Biosens. Bioelectron. 24 (2009) 3399-3411.
  • H. Ju, X. Zhang, J. Wang, NanoBiosensing, Springer, New York, USA p. 425, 2011.
  • A. Erdem, Nanomaterial-based electrochemical DNA sensing strategies, Talanta, 74 (2007) 318-325.
  • Y.R. Kim, S. Bong, Y.J. Kang, Y. Yang, R.K. Mahajan, J.S. Kim, H. Kim, Electrochemical detection of dopamine in the presence of ascorbic acid using graphene modified electrodes, Biosens. Bioelectron. 25 (2010) 2366-2369.
  • Z. Linting, L. Ruiyi, L. Zaijun, X. Qianfang, F. Yinjun, L. Junkang, An immunosensor for ultrasensitive detection of aflatoxin B1with an enhanced electrochemical performance based on graphene/ conducting polymer/gold nanoparticles/the ionic liquid composite film on modified gold electrode with electrodeposition, Sensor Actuat B-Chem. 174 (2012) 359-365.
  • H. Karadeniz, B. Gülmez, A. Erdem, F. Jelen, M. Özsoz, E. Palecek, 2006 Echinomycin and cobaltphenanthroline as redox indicators of DNA hybridization at gold electrodes, Front. Biosci. 11 (2006) 1870-1877.
  • A.P. Deng, H. Yang, A multichannel electrochemical detector coupled with an ELISA microtiter plate for the immunoassay of 2,4-dichlorophenoxyacetic acid, Sensor Actuat. B-Chem. 124 (2007) 202-208.
  • S. Jiang, E. Hua, M. Liang, B. Liu, G. Xie, A novel immunosensor for detecting toxoplasma gondiispecific IgM based on goldmag nanoparticles and graphene sheets, Colloid Surface B. 101 (2013) 481486.
  • Z. Liu, R. Yuan, Y. Chai, Y. Zhuo, C. Hong, H. Yang, Highly sensitive, reagentless amperometric immunosensor based on a novel redox-active organic– inorganic composite film, Sensor Actuat B-Chem. 134 (2008) 625-631.
  • J. Narang, N. Malhotra, G. Singh, C.S. Pundir, Electrochemical impediometric detection of anti-HIV drug taking gold nanorods as a sensing interface, Biosens Bioelectron. 66 (2015) 332-337.
  • B. Rezaei, M.K. Boroujeni, A.A. Ensafi, Fabrication of DNA, o-phenylenediamine, and gold nanoparticle bioimprinted polymer electrochemical sensor for the determination of dopamine, Biosens. Bioelectron 66 (2015) 490-496.
  • G. Gokce, A. Erdem, C. Ceylan, M. Akgoz, Voltammetric detection of sequence-selective DNA hybridization related to Toxoplasma gondii in PCR amplicons, Talanta 149 (2016) 244-249.
  • S. Tajik, M.A. Taher, M.T. Mahani, Electrochemical determination of the anticancer drug taxol at a ds-DNA modified pencil-graphite electrode and its application as a label-free electrochemical biosensor, Talanta 134 (2015) 60-64.
  • X. Guo, Q. Wang, J. Li, J. Cui, S. Zhou, S. Hao, D. Wu, A mini-electrochemical system integrated micropipet tip and pencil graphite electrode for detection of anticancer drug sensitivity  in vitro, Biosens Bioelectron. 64 (2015) 594-596.
  • M. Wang, L. Wang, H. Yuan, X. Ji, C. Sun, L. Ma, Y. Bai, T. Li, J. Li, Immunosensors Based on Layer-byLayer Self-Assembled Au Colloidal Electrode for the Electrochemical Detection of Antigen, Electroanal. 16 (2004) 757-764.
  • M. Wang, L. Wang, G. Wang, X. Ji, Y. Bai, T. Li, S. Gong, J. Li, Application of impedance spectroscopy for monitoring colloid Au-enhanced antibody immobilization and antibody–antigen reactions, Biosens Bioelectron. 19 (2004) 575-582.
  • D. Tang, R. Yuan, Y. Chai, J. Dai, X. Zhong, Y. Liu, A novel immunosensor based on immobilization of hepatitis B surface antibody on platinum electrode modified colloidal gold and polyvinyl butyral as matrices via electrochemical impedance spectroscopy, Bioelectrochemistry 65 (2004) 15-22.
  • C.Z. Li, Y. Liu, J.H.T. Luong, Impedance Sensing of DNA Binding Drugs Using Gold Substrates Modified with Gold Nanoparticles, Anal. Chem. 77 (2005) 478485.
  • Z.S. Wu, J.S. Li, M.H. Luo, G.L. Shen, R.Q. Yu A novel capacitive immunosensor based on gold colloid monolayers associated with a sol–gel matrix, Anal. Chim Acta., 528 (2005) 235-242.
  • H. Chen, J.H. Jiang, Y. Huang, T. Deng, J.S. Li, G.L. Shen, R.Q. Yu, An electrochemical impedance immunosensor with signal amplification based on Au-colloid labeled antibody complex, Sensor. Actuat. B-Chem., 117 (2006) 211-219.
  • H. Huang, Z. Liu, X. Yang, Application of electrochemical impedance spectroscopy for monitoring allergen–antibody reactions using gold nanoparticle-based biomolecular immobilization method, Anal. Biochem. 356 (2006) 208-214.
  • H. Huang, P. Ran, Z. Liu, Impedance sensing of allergen–antibody interaction on glassy carbon electrode modified by gold electrodeposition, Bioelectrochemistry, 70 (2007) 257-262.
  • H. Tang, J. Chen, L. Nie, Y. Kuang, S. Yao, A label-free electrochemical immunoassay for carcinoembryonic antigen (CEA) based on gold nanoparticles (AuNPs) and nonconductive polymer film, Biosens. Bioelectron. 22 (2007) 1061-1067.
  • I. Szymanska, H. Radecka, J. Radecki, R. Kaliszan, Electrochemical impedance spectroscopy for study of amyloid β-peptide interactions with (−) nicotine ditartrate and (−) cotinine, Biosens. Bioelectron., 22 (2007) 1955-1960.
  • S. Zhang, F. Huang, B. Liu, J. Ding, X. Xu, J. Kong, A sensitive impedance immunosensor based on functionalized gold nanoparticle–protein composite films for probing apolipoprotein A-I, Talanta, 71 (2007) 874-881.
  • J. Yang, T. Yang, Y. Feng, K. Jiao, A DNA electrochemical sensor based on nanogold-modified poly-2,6-pyridinedicarboxylic acid film and detection of PAT gene fragment, Anal. Biochem. 365 (2007) 24-30.
  • Q. Gao, W. Zhang, Y. Guo, H. Qi, C. Zhang, Highly sensitive impedimetric sensing of DNA hybridization based on the target DNA-induced displacement of gold nanoparticles attached to ssDNA probe, Electrochem. Commun., 13 (2011) 335-337.
  • B. Rezaei, E. Havakeshian, A.A. Ensafi, Stainless steel modified with an aminosilane layer and gold nanoparticles as a novel disposable substrate for impedimetric immunosensors, Biosens. Bioelectron., 48 (2013) 61-66.
  • B. Rezaei, N. Majidi, H. Rahmani, T. Khayamian, Electrochemical impedimetric immunosensor for insulin like growth factor-1 using specific monoclonal antibody-nanogold modified electrode, Biosens. Bioelectron., 26 (2011) 2130-2134.
  • A. Bonanni, M.J. Esplandiu, M. Valle, Impedimetric genosensors employing COOH-modified carbon nanotube screen-printed electrodes, Biosens. Bioelectron., 24 (2009) 2885-2891.
  • M. Muti, A. Erdem, A.E. Karagozler, M. Soysal, 5-Amino-2-mercapto-1,3,4-thidiazole modified singleuse sensors for electrochemical DNA analysis, Colloid Surface B, 93 (2012) 116-120.
  • W. Cheng, W. Zhang, Y. Yan, B. Shen, D. Zhu, R. Lei, S. Ding, A novel electrochemical biosensor for ultrasensitive and specific detection of DNA based on molecular beacon mediated circular strand displacement and rolling circle amplification, Biosens. Bioelectron., 62 (2014) 274-279.
  • Y. Qian, C. Wang, F. Gao, Enzyme-free amplification for sensitive electrochemical detection of DNA via target-catalyzed hairpin assembly assisted current change, Talanta, 130 (2014) 33-38.
  • C. Tersch, F. Lisdat, Label-free detection of protein– DNA interactions using electrochemical impedance spectroscopy, Electrochim. Acta, 56 (2011) 7673-7679.
  • C. Witte,F. Lisdat, Direct Detection of DNA and DNALigand Interaction by Impedance Spectroscopy, Electroanal., 23 (2011) 339-346.
  • P. Du, H. Li, Z. Mei, S. Liu, Electrochemical DNA biosensor for the detection of DNA hybridization with the amplification of Au nanoparticles and CdS nanoparticles, Bioelectrochemistry, 75 (2009) 37-43.
  • J.N. Miller and J.C. Miller, Statistics and Chemometrics for Analytical Chemistry Pearson Education, Essex, Fifth ed. p. 121 2005.
  • W. Wang, X. Fan, S. Xu, J.J. Davis, X. Luo, Low fouling label-free DNA sensor based on polyethylene glycols decorated with gold nanoparticles for the detection of breast cancer biomarkers, Biosens. Bioelectron., 71 (2015) 51-56.
  • T. Yumak, F. Kuralay, M. Muti, A. Sinağ, A, Erdem, S. Abaci, Preparation and characterization of zinc oxide nanoparticles and their sensor applications for electrochemical monitoring of nucleic acid hybridization, Colloid. Surf. B, 86 (2011) 397-403.
  • M. Muti, F. Kuralay, A. Erdem, Single-walled carbon nanotubes-polymer modified graphite electrodes for DNA hybridization, Colloid. Surf. B, 91 (2012) 77-83.
Hacettepe Journal of Biology and Chemistry-Cover
  • ISSN: 2687-475X
  • Yayın Aralığı: Yılda 4 Sayı
  • Başlangıç: 1972
  • Yayıncı: Hacettepe Üniversitesi, Fen Fakültesi
Sayıdaki Diğer Makaleler

Yağ Çıkarma İşlemi Sonrasında Atık Materyal Olarak Ortaya Çıkan Çörek Otu Posasının Anti-oksidan, Anti-proliferatif ve Antianjiyojenik Özellikleri

Gamze TAN

Sodyum Hipokloritin Gökkuşağı Alabalıklarında Strese Sebep Olması: Tatlı Su Kirlenmesinin Ekotoksikolojik Göstergesi Olarak Kan Parametrelerindeki Varyasyonu

Arnela KARAHODZİC, Zejneb BABİC, Ema ZUKİC, Edina SEHİC, Subha DZAFİC, Andi ALİJAGİC, Erna ISLAMAGIC, Damir SULJEVIC

Oda Sıcaklığında Benzen Hidrojenlenmesinde Katalizör Olarak Kullanılan Tungsten(VI) Oksit Destekli Rodyum(0) Nanoparçacıkları

Serdar AKBAYRAK

Sultan Sazlığından (Kayseri, Türkiye) Yeni Bir Balık Türü, Cobitis fusunae, (Teleostei: Cobitidae)

Filiz ÖZDEMİR, Sevil SUNGUR, Soheil EAGDERİ

Yapay Sinir Ağı Kullanarak Kuzeybatı Anadolu’dan Darevskia bithynica ‘nın (Méhely 1909) Cinsiyet Dimorfizmi Tahmini

Yusuf KUMLUTAŞ, Çağın Kandemir ÇAVAŞ

Kemaliye İlçesinin (Erzincan) Florası

Mehmet Ufuk ÖZBEK, Ali KANDEMİR, Sırrı YÜZBAŞIOĞLU, Haşim ALTINÖZLÜ

Biyo-esinlenmiş Polidopamin Kaplaması ile 3-Boyutlu ve Nanoparçacıklarla Dekore Edilmiş Katalitik Sistem: Sigara Filtresi Örnek İncelemesi

Mehmet YILMAZ

Katyonik Boyanın Anyonik Hidrojel Üzerinde Adsorbsiyonu ve Antibakteriyel Özelliklerle İlaç Uygulamasında İkinci Kullanımı

Pınar ILGIN

Başak BİLEN, Hasan BAYRAKTAR, Seçil ÖNAL

Ranid Taksonomisinde Geometrik Morfometrik Analiz: Beş RanidTürünün Kondrokranial Şekil Varyasyonu (Anura: Ranidae)

Elif YILDIRIM