Relationships and generic delimitation of Eurasian genera of the subtribe Asterinae (Astereae, Asteraceae) using molecular phylogeny of ITS

The subtribe Asterinae (Astereae, Asteraceae) includes highly variable, often polyploid species. Recent findings based on molecular methods led to revision of its volume. However, most of these studies lacked species from Eurasia, where a lot of previous taxonomic treatments of the subtribe exist. In this study we used molecular phylogenetics methods with internal transcribed spacer (ITS) as a marker to resolve evolutionary relations between representatives of the subtribe Asterinae from Siberia, Kazakhstan, and the European part of Russia. Our reconstruction revealed that a clade including all Asterinae species is paraphyletic. Inside this clade, there are species with unresolved basal positions, for example Erigeron flaccidus and its relatives. Moreover, several well-supported groups exist: group of the genera Galatella, Crinitaria, Linosyris, and Tripolium; group of species of North American origin; and three related groups of Eurasian species: typical Eurasian asters, Heteropappus group (genera Heteropappus, Kalimeris), and Asterothamnus group (genera Asterothamnus, Rhinactinidia). The results obtained confirm previous findings with notable exceptions and add important phylogenetic data for 15 previously unstudied species, 11 of which are narrow Asian endemics. Conclusions of this study clarify relations between species and genera within this subtribe. Further molecular phylogenetics analyses of the remaining Eurasian species are needed for taxonomic revision and segregation of Asterinae into several subtribes.

Relationships and generic delimitation of Eurasian genera of the subtribe Asterinae (Astereae, Asteraceae) using molecular phylogeny of ITS

The subtribe Asterinae (Astereae, Asteraceae) includes highly variable, often polyploid species. Recent findings based on molecular methods led to revision of its volume. However, most of these studies lacked species from Eurasia, where a lot of previous taxonomic treatments of the subtribe exist. In this study we used molecular phylogenetics methods with internal transcribed spacer (ITS) as a marker to resolve evolutionary relations between representatives of the subtribe Asterinae from Siberia, Kazakhstan, and the European part of Russia. Our reconstruction revealed that a clade including all Asterinae species is paraphyletic. Inside this clade, there are species with unresolved basal positions, for example Erigeron flaccidus and its relatives. Moreover, several well-supported groups exist: group of the genera Galatella, Crinitaria, Linosyris, and Tripolium; group of species of North American origin; and three related groups of Eurasian species: typical Eurasian asters, Heteropappus group (genera Heteropappus, Kalimeris), and Asterothamnus group (genera Asterothamnus, Rhinactinidia). The results obtained confirm previous findings with notable exceptions and add important phylogenetic data for 15 previously unstudied species, 11 of which are narrow Asian endemics. Conclusions of this study clarify relations between species and genera within this subtribe. Further molecular phylogenetics analyses of the remaining Eurasian species are needed for taxonomic revision and segregation of Asterinae into several subtribes.

___

  • Barkalov VU (1992). Asterinae. In: Charkevicz SS, editor. Plantae vascular orientis extrimi sovietici, Vol. 6: Asteraceae (Compositae). S.-Petersburg, pp. 45–92 (in Russian).
  • Botschantzev VP (1959). Brachyactis Ledeb., Erigeron L. In: Komarov VL, editor. Flora USSR, Vol. 25. Moskva & Leningrad: Editio Academiae Sci URSS, pp. 189–288 (in Russian).
  • Botschantzev VP (1986). Genus Rhinactinidia Novopokr. (Compositae). Novosti Sistematiki Plantarum Vascularium 23: 178–181 (in Russian).
  • Brouillet L, Lowrey TK, Urbatsch L, Karaman-Castro V, Sancho G, Wagstaff S, Semple J (2009). Astereae. In: Funk VA, Susanna A, Stuessy T, Bayer R. editors. Systematics, Evolution and Biogeography of the Compositae. Vienna, Austria: IAPT, pp. 589–629.
  • Chen YL, Chen YS, Brouillet L, Semple JC (2011). Astereae. In: Wu ZY, Raven PH, Hong DY, editors. Flora of China, Vol. 20–21 (Asteraceae). Science Press (Beijing) and Missouri Botanical Garden Press, pp. 545–652.
  • Cheremuschkina VA, Korolyuk EA, Korolyuk AJ (2011). Biological characters of Rhinactinidia eremophila (Asteraceae). Science Journal Flora Asian Russia 8: 54–60 (in Russian).
  • Darriba D, Taboada GL, Doallo R, Posada D (2012). jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 9: 772–772.
  • Doyle JJ, Doyle JL (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, Botanical Society of America 19: 11–15.
  • Fiz O, Valcarcel V, Vargas P (2002). Phylogenetic position of Mediterranean Astereae and character evolution of daisies (Bellis, Asteraceae) inferred from nrDNA ITS sequences. Mol Phylogenet Evol 25: 157–171.
  • Grierson AJ (1975). Aster L. In: Davis PH, editor. Flora of Turkey and the East Aegean Islands, Vol. 5. Edinburgh, UK: Edinburgh University Press. pp. 118–121.
  • Grierson AJ (1982). In: Rechinger KH, editor. Flora Iranica, Vol. 5. Ferdinand Berger & Söhne GmbH, pp. 3–14.
  • Grubov VI (1982). Key to the vascular plants of Mongolia. Leningrad: Nauka (in Russian).
  • Gu HY, Hoch P (1997). Systematics of the Kalimeris (Asteraceae: Astereae). Ann Mo Bot Gard 84: 762–814.
  • Ito M, Soejima A (1995). Aster. In: Iwatsuki K, Yamazaki T, Boufford DE, Ohba H, editors. Flora of Japan, Vol. 3b. Tokyo, Japan: Kodansha Ltd, pp. 59–73.
  • Ito M, Soejima A, Hasebe M, Watanabe K (1995). A chloroplast- DNA phylogeny of Kalimeris and Aster, with reference to generic circumscription. J Plant Res 108: 93–96.
  • Ito M, Soejima A, Watanabe K (1998). Phylogenetic relationships of Japanese Aster (Asteraceae, Astereae) sensu lato based on chloroplast-DNA restriction site mutations. J Plant Res 111: 217–223.
  • Karaman-Castro V, Urbatsch LE (2009). Phylogeny of Hinterhubera group and related genera (Hinterhuberinae: Astereae) based on the nrDNA ITS and ETS sequences. Syst Bot 34: 805–817.
  • Korolyuk EA (1997). Structure of seed surfaces of the subtribe Asterinae (Asteraceae) from Siberia. Botanichesky Zhurnal 82: 29–34 (in Russian).
  • Korolyuk EA (1999). The subtribe Asterinae O.Hoffm. (Asteracea Dumort.) in Siberia (taxonomy, khorology). Disser.: 03.00.05 (in Russian).
  • Korolyuk EA (2007). Boltonia, Heteropappus, Aster, Kalimeris, Asterothamnus, Rhinactinidia (Krylovia), Arctogeron, Turczaninowia, Galatella, Crinitaria (Linosyris), Tripolium, Brachyactis, Erigeron. In: Krasnoborov IM, editor. Flora of Sibiria. (English translation), Vol. 13: Asteraceae (Compositae). Enfield, NH, USA: Publ. Sci Publishers, pp. 29–53.
  • Korolyuk EA, Serykh EA, Khanina MA (1998). Features of terpenoid- containing structures as an additional attribute in systematic subtribe Asterinae (Asteraceae). Botanicheskiye issledovaniya Sibiri i Kazahkstana 4: 26–48 (in Russian).
  • Lashchinskiy NN, Korolyuk AJ, Lashchinskaya NV, Korolyuk EA (2010). New records of rare and invasive vascular plant species from Omsk, Novosibirsk, Tumen and Altai areas. Turczaninowia 13: 117–123 (in Russian).
  • Ledebour CF (1844–1846). Flora Rossica. Stuttgartiae, Vol. 2. Stuttgart: Sumptibus Librariae E. Schweizerbart.
  • Li WP, Yang FS, Jivkova T, Yin GS (2012). Phylogenetic relationships and generic delimitation of Eurasian Aster (Asteraceae: Astereae) inferred from ITS, ETS and trnL-F sequence data. Ann Bot–London 109: 1341–1357.
  • Ling R, Chen YL, Shi Z (1985). Astereae. In: Ling R, Chen YL, Shi Z, editors. Flora Reipublicae Popularis Sinicae, Vol. 74. Beijing, China: Science Press, pp. 70–353.
  • Löytynoja A, Goldman N (2005). An algorithm for progressive multiple alignment of sequences with insertions. P Natl Acad Sci USA 102: 10557–10562.
  • Merxmuller H, Schreiber A, Yeo PF (1976). Aster L. In: Tutin TG, Burges NA, Chater AO et al., editors. Flora Europaea, Vol. 4: Plantaginaceae to Compositae (and Rubiaceae). London, UK: Cambridge University Press, pp. 112–116.
  • Müller K (2005). SeqState. Applied Bioinformatics 4: 65–69.
  • Nagy LG, Kocsubé S, Csanádi Z, Kovács GM, Petkovits T, Vágvölgyi C, Papp T (2012). Re-mind the gap Insertion–deletion data reveal neglected phylogenetic potential of the nuclear ribosomal internal transcribed spacer (ITS) of fungi. PLoS One 7: e49794.
  • Nesom GL (1994a). Subtribal classification of the Astereae (Asteraceae). Phytologia 76: 193–274.
  • Nesom GL (1994b). Review of the taxonomy of Aster sensu lato (Asteraceae: Astereae), emphasizing the New World species. Phytologia 77: 141–297.
  • Nesom GL, Robinson H (2007). Tribe Astereae Cass. In: Kadereit JW, Jeffrey C, editors. The families and genera of vascular plants. Flowering plants: Eudicots: Asterales. Berlin, Germany: Springer, pp. 284–342.
  • Novopokrovskiy IV (1948). Obzor vidov Galatella. Flora et Systematica Plantae Vasculares 7: 113–148 (in Latin).
  • Novopokrovskiy IV (1949). Revisio critica specierum generis Galatella Cass. in Sibiria et parte finitum Kasachstaniae cressentum. Notulae systematicae ex Herbario Instituti Botanici Nomine V.L. Komarovii Academiae Scientiarum URSS 9: 211–233 (in Russian).
  • Novopokrovskiy IV (1950). Asterothamnus Novopokr. a new genus from Asteraceae Middel Asian. Notulae systematicae ex Herbario Instituti Botanici Nomine V.L. Komarovii Academiae Scientiarum URSS 13: 330–346 (in Russian).
  • Noyes RD, Rieseberg LH (1999). ITS sequence data support a single origin for North American Astereae (Asteraceae) and reflect deep geographic divisions in Aster s.l. Am J Bot 86: 398–412.
  • Ronquist F, Huelsenbeck J (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574.
  • Silvestro D, Michalak I (2012). RaxmlGUI: a graphical front-end for RAxML. Org Divers Evol 12: 335–337.
  • Simmons MP, Ochoterena H (2000). Gaps as characters in sequence- based phylogenetic analyses. Syst Biol 49: 369–381.
  • Tamamschyan SG (1959). Heteropappus Less., Aster L., Doellingeria Nees, Kalimeris Cass., Asterothamnus Novopokr., Krylovia Schischk., Arctogeron DC., Turczaninowia DC. In: Komarov VL, editor. Flora USSR, Vol. 25. Moskva & Leningrad: Editio Academiae Sci URSS, pp. 61–73, 77–110, 121–138 (in Russian).
  • Terekhova VI (1965). Galatella, Linosyris, Pseudolynosyris, Tripolium. In: Pavlov NV, editor. The flora of Kazakhstan, Vol. 8. Alma- Ata: Nauka, pp. 321–340 (in Russian).
  • Turczaninow NS (1842–1856). Flora Baicalensi-Dahurica seu Descriptio Plantarum in regionibuscis - et Transbaicalensibus Atque in Dahuria sponte Nascentium, Vol. 1–2. Mosquae: Semeen & Universitatis Caesareae.
  • Tzvelev NN (1959). Galatella Cass., Linosyris Cass. In: Komarov VL, editor. Flora USSR, Vol. 25. Moskva & Leningrad: Editio Academiae Sci URSS, pp. 138–180 (in Russian).
  • Tzvelev NN (1990). Galatella Cass., Linosyris Cass. In: Komarov VL, editor. Flora of the USSR (English translation), Vol. 25. Plymouth, UK: Science Publishers, pp. 150–190.
  • Tzvelev NN (1994). Triba 6. Astereae Cass. In: Flora of Parties Europaea URSS, Tzvelev NN, editor, Vol. 7. S.-Peterburg: Nauka, pp. 174–205 (in Russian).
  • Vaezi J, Brouillet L (2009). Phylogenetic relationships among diploid species of Symphyotrichum (Asteraceae: Astereae) based on two nuclear markers, ITS and GAPDH. Mol Phylogenet Evol 51: 540–553.
  • White TJ, Bruns T, Lee S, Taylor J (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innia M, Gelfand DH, Sninsky JJ, White TJ, editors. PCR protocols. San Diego, CA, USA: Academic Press, pp. 315–322.
Turkish Journal of Botany-Cover
  • ISSN: 1300-008X
  • Yayın Aralığı: Yılda 6 Sayı
  • Yayıncı: TÜBİTAK
Sayıdaki Diğer Makaleler

Analysis of interactions of nitric oxide and polyamine under cadmium stress in wheat

Fatma MUTLU, Füsun YÜREKLİ

New records for Turkey and contributions to the macrofungal diversity of Isparta Province

HALİL GÜNGÖR, MEHMET HALİL SOLAK, HAKAN ALLI, MUSTAFA IŞILOĞLU, ERBİL KALMIŞ

A new species of Russula (Russulaceae) from India based on morphological and molecular (ITS sequence) data

ARUN KUMAR DUTTA, SOUMITRA PALOI, PRAKASH PRADHAN, KRISHNENDU ACHARYA

Aristolochia altanii (Aristolochiaceae), a new species from Turkey

AHMET İLÇİM, LÜTFİ BEHÇET, AYCAN TOSUNOĞLU

Molecular phylogeny and biogeography of the South American genus Metrodorea (Rutaceae)

Pedro DIAS, RENATA GIASSI UDULUTSCH, Jose Rubens PIRANI

Generating salt-tolerant Nicotiana tabacum and identification of stress-responsive miRNAs in transgenics

Ferhunde AYSİN, Ayşe Elif Erson BENSAN, Füsun EYİDOĞAN, Hüseyin Avni ÖKTEM

Effects of cobalt nanoparticles on artemisinin production and gene expression in Artemisia annua

Bita GHASEMI, Ramin HOSSEINI, Fatemeh Dehghan NAYERI

Promotive effect of exogenously applied thiourea on key physiological parametersand oxidative defense mechanism in salt-stressed Zea mays L. plants

Cengiz KAYA, Muhammad ASHRAF, Osman SÖNMEZ

Relationships and generic delimitation of Eurasian genera of the subtribe Asterinae (Astereae, Asteraceae) using molecular phylogeny of ITS

Elena KOROLYUK, Alexey MAKUNIN, Tatiana MATVEEVA

Taxonomic and nomenclatural contributions to Pyrus L. (Rosaceae) from Turkey

ZÜBEYDE UĞURLU AYDIN, ALİ ASLAN DÖNMEZ