Molecular phylogeny and biogeography of the South American genus Metrodorea (Rutaceae)

The genus Metrodorea (Rutaceae), with 6 species, has representatives that vary from small shrubs to tall trees, and its leaf sheaths make it unique in the family; it is restricted to South America, with species diversity concentrated in Brazil. In this study, we applied Bayesian and parsimony methods to infer the molecular phylogeny of Metrodorea, and cladistic biogeographic methods to propose an area cladogram for the genus. All results supported Metrodorea as monophyletic, and the presence of leaf sheaths is reinforced as its key diagnostic feature. Bayesian and parsimony trees were identical for relationships within Metrodorea. The crown clade (M. Flavida, M. Mollis) is composed of two species of allopatric distribution and very different morphologies. Metrodorea is distributed in three biogeographic subregions: the Amazonian subregion is populated by one species, the Parana subregion by three species, and the Chacoan subregion by five species. Primary Brooks parsimony resulted in only one area cladogram, which differs from the strict consensus tree from the component analysis by the relationships of the Cerrado, and it suggests a closer relationship between Caatinga province and the Amazon subregion.

Molecular phylogeny and biogeography of the South American genus Metrodorea (Rutaceae)

The genus Metrodorea (Rutaceae), with 6 species, has representatives that vary from small shrubs to tall trees, and its leaf sheaths make it unique in the family; it is restricted to South America, with species diversity concentrated in Brazil. In this study, we applied Bayesian and parsimony methods to infer the molecular phylogeny of Metrodorea, and cladistic biogeographic methods to propose an area cladogram for the genus. All results supported Metrodorea as monophyletic, and the presence of leaf sheaths is reinforced as its key diagnostic feature. Bayesian and parsimony trees were identical for relationships within Metrodorea. The crown clade (M. Flavida, M. Mollis) is composed of two species of allopatric distribution and very different morphologies. Metrodorea is distributed in three biogeographic subregions: the Amazonian subregion is populated by one species, the Parana subregion by three species, and the Chacoan subregion by five species. Primary Brooks parsimony resulted in only one area cladogram, which differs from the strict consensus tree from the component analysis by the relationships of the Cerrado, and it suggests a closer relationship between Caatinga province and the Amazon subregion.

___

  • Álvarez I, Wendel JF (2003). Ribosomal ITS sequences and plant phylogenetic inference. Mol Phylogenet Evol 29: 417–434.
  • Bletter N, Janovec J, Brosi B, Daly DC (2004). A digital basemap for studying the Neotropical flora. Taxon 53: 469–477.
  • Bremer K (1988). The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42: 795– 803.
  • Chagas RK, Durigan G, Contieri WA, Saito M (2004). Crescimento diametral de espécies arbóreas em Floresta Estacional Semidecidual ao longo de seis anos. In: Bôas OV, Durigan G, editors. Pesquisas em conservação e recuperação ambiental no Oeste Paulista: resultados da cooperação Brasil/Japão. São Paulo: Páginas & Letras, pp. 265–290 (in Portuguese).
  • Dias P, Udulutsch RG, Pirani JR (2013). A new species of Metrodorea (Rutaceae) from Brazil: morphology, molecular phylogenetics, and distribution. Phytotaxa 117: 35–41.
  • Durigan G, Franco GADC, Saito M, Baitello JB (2000). Structure and diversity of the arboreal component of the forest at Caetetus Ecological Station, Gália, SP. Rev Bras Bot 23: 371–383 (article in Portuguese with an abstract in English).
  • Engler HGA (1931). Rutaceae. In: Engler HGA, Prantl K, editors. Die Natürlichen Pflanzenfamilien. 2nd ed. Vol. 19a. Leipzig, Germany: Wilhelm Engelmann, pp. 187–359.
  • Ewing B, Green P (1998). Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8: 186–194.
  • Ewing B, Hillier L, Wendl MC, Green P (1998). Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8: 175–185.
  • Farris JS, Källersjö M, Kluge AG, Bult C (1995). Testing significance of incongruence. Cladistics 10: 315–319.
  • Felsenstein J (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783–791.
  • Fiaschi P, Pirani JR (2009). Review of plant biogeographic studies in Brazil. J Syst Evol 47: 477–496.
  • Fitch WM (1971). Toward defining the course of evolution: minimal change for a specific tree topology. Syst Zool 20: 406–416.
  • Giribet G, Wheeler WC (1999). On gaps. Mol Phylogenet Evol 13: 132–143.
  • Gordon D, Abajian C, Green P (1998). Consed: a graphical tool for sequence finishing. Genome Res 8: 195–202.
  • Groppo M, Kallunki JA, Pirani JR, Antonelli A (2012). Chilean Pitavia more closely related to Oceania and Old World Rutaceae than to Neotropical groups: evidence from two cpDNA non-coding regions, with a new subfamilial classification of the family. Phytokeys 19: 9–29.
  • Guidugli MC, Ferreira-Ramos R, Sousa ACB de, Cidade FW, Marconi TG, Mestriner MA, Groppo M, Alzate-Marin AL (2012). Genetic diversity of Metrodorea nigra (Rutaceae) from a small forest remnant in Brazil assessed with microsatellite markers. Genetics Mol Res 11: 10–16.
  • Hamilton MB (1999). Four primer pair for the amplification of chloroplast intergenic regions with interspecific variation. Mol Ecol 8: 513–525.
  • Hendy MD, Penny D (1982). Branch and bound algorithms to determine minimal evolutionary trees. Math Biosc 60: 133–142.
  • Holmgren PK, Holmgren NH, Barnett LC (1990). Part I: The Herbaria of the World [Regnum Veg. vol. 120]. New York: The New York Botanical Garden. Website: http://sweetgum.nybg.org/ih/ [accessed 2 January 2014].
  • Huelsenbeck JP, Crandall KA (1997). Phylogeny estimation and hypothesis testing using maximum likelihood. Annu Rev Ecol Syst 28: 437–466.
  • Kaastra RC (1982). A monograph of the Pilocarpinae (Rutaceae). New York, NY, USA: The New York Botanical Garden [Flora Neotropica Monographs].
  • Maddison WP, Maddison DR (2003). MacClade 4. Sunderland, MA, USA: Sinauer Associates.
  • Maddison WP, Maddison DR (2014). Mesquite: a modular system for evolutionary analysis. v. 2.75. Website: http://mesquiteproject. org [accessed 2 January 2014].
  • Metzger JP (2000). Tree functional group richness and landscape structure in a Brazilian tropical fragmented landscape. Ecol Appl 10: 1147–1161.
  • Morrone JJ (2006). Biogeographic areas and transition zones of Latin America and the Caribbean islands based on panbiogeographic and cladistic analyses of the entomofauna. Annu Rev Entomol 51: 467–494.
  • Müller AH, Vieira PC, Silva MF das G. F. da, Fernandes JB (1995). Dihydrochalcones, coumarins and alkaloids from Metrodorea nigra. Phytochemistry 40: 1797–1800.
  • Nelson GJ, Platnick N (1981). Systematics and biogeography: cladistics and vicariance. New York, NY, USA: Columbia University Press.
  • Nixon KC, Carpenter JM (1993). On outgroups. Cladistics 9: 413–426.
  • Ogden TH, Rosenberg MS (2007). How should gaps be treated in parsimony? A comparison of approaches using simulation. Mol Phylogen Evol 42: 817–826.
  • Olson DM, Dinerstein E, Wikramanayake ED, Burgess ND, Powell GVN, Underwood EC, D’amico JA, Itoua I, Strand HE, Morrison JC et al. (2001). Terrestrial ecoregions of the world: a new map of life on earth. Bioscience 51: 933–938.
  • Page RDM (1993). Component 2. London, UK: The Natural History Museum.
  • Pirani JR (1998) A revision of Helietta and Balfourodendron (Rutaceae- Pteleinae). Brittonia 50: 348–380.
  • Pombal ECP, Morellato LPC (2000). Differentiation of floral color and odor in two fly pollinated species of Metrodorea (Rutaceae) from Brazil. Plant Syst Evol 221: 141–156.
  • R Development Core Team (2014). R: a language and environment for statistical computing, v. 3. Vienna. Website: http://www.R- project.org [accessed 20 March 2014].
  • Ronquist F, Huelsenbeck JP (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574.
  • Santos AMM, Cavalcanti DR, Silva JMC da, Tabarelli M (2007a). Biogeographical relationships among tropical forests in north- eastern Brazil. J Biogeogr 34: 437–446.
  • Santos K, Kinoshita LS, Santos FA (2007b). Tree species composition and similarity in semideciduous forest fragments of southeastern Brazil. Biol Conserv 135: 268–277 (article in Portuguese with an abstract in English).
  • Schwarcz KD, Pataca CL, Abreu AG, Bariani JM, Macrini CMT, Solferini VN (2010). Genetic diversity in Atlantic forest trees: fragmentation effects on Astronium graveolens (Anacardiaceae) and Metrodorea nigra (Rutaceae), species with distinct seed dispersal strategies. Bot J Linn Soc 164: 326–336.
  • Souza LA, Moscheta IS, Mourao KSM, Rosa SM (2004). Morphology and anatomy of the flower and anthesis of Metrodorea nigra St. Hill. (Rutaceae). Braz Arch Biol Techn 47.1: 107–112.
  • Stanford AM, Harden R, Parks CR (2000). Phylogeny and biogeography of Juglans (Juglandaceae) based on matK and ITS sequence data. Amer J Bot 87: 872–882.
  • Swofford DL (2002). PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods), version 4. Sunderland, MA, USA: Sinauer Associates.
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997). The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24: 4876–4882.
  • Toniato MTZ, Oliveira-Filho AT (2004). Variations in tree community composition and structure in a fragment of tropical semideciduous forest in southeastern Brazil related to different human disturbance histories. Forest Ecol Manag 198: 319–339.
  • USBGN (1963–onwards). United States Board on Geographic Names gazetteers. Washington, DC: United States National Imagery and Mapping Agency. Website: http://egsc.usgs.gov/nimamaps/bgn. html [accessed 6 May 2008].
  • Veller MGP van, Brooks DR (2001). When simplicity is not parsimonious: a priori and a posteriori methods in historical biogeography. J Biogeogr 28: 1–11.
  • Wiley EO (1987). Methods in vicariance biogeography. In: Hovenkamp P, editor. Systematics and evolution: a matter of diversity. Utrecht, the Netherlands: Utrecht University, pp. 283–306.
  • Woodward SL (2009). Introduction to biomes. Biomes of the World. Westport, CT, USA: Greenwood Publishing Group.
Turkish Journal of Botany-Cover
  • ISSN: 1300-008X
  • Yayın Aralığı: Yılda 6 Sayı
  • Yayıncı: TÜBİTAK
Sayıdaki Diğer Makaleler

Karyotype analysis in Allium roseum L. (Alliaceae) using fluorescent in situ hybridization of rDNA sites and conventional stainings

Arbi GUETAT, Marcella ROSATO, Josep A. ROSSELLÃ", Mohamed BOUSSAID

A new species of Russula (Russulaceae) from India based on morphological and molecular (ITS sequence) data

ARUN KUMAR DUTTA, SOUMITRA PALOI, PRAKASH PRADHAN, KRISHNENDU ACHARYA

Molecular phylogeny and biogeography of the South American genus Metrodorea (Rutaceae)

Pedro DIAS, RENATA GIASSI UDULUTSCH, Jose Rubens PIRANI

Promotive effect of exogenously applied thiourea on key physiological parametersand oxidative defense mechanism in salt-stressed Zea mays L. plants

Cengiz KAYA, Muhammad ASHRAF, Osman SÖNMEZ

Analysis of interactions of nitric oxide and polyamine under cadmium stress in wheat

Fatma MUTLU, Füsun YÜREKLİ

Effects of cobalt nanoparticles on artemisinin production and gene expression in Artemisia annua

Bita GHASEMI, Ramin HOSSEINI, Fatemeh Dehghan NAYERI

Taxonomic and nomenclatural contributions to Pyrus L. (Rosaceae) from Turkey

ZÜBEYDE UĞURLU AYDIN, ALİ ASLAN DÖNMEZ

Taxonomic studies on some new fungal records from Trabzon, Turkey

ERTUĞRUL SESLİ, PIERRE-ARTHUR MOREAU

Aristolochia altanii (Aristolochiaceae), a new species from Turkey

AHMET İLÇİM, LÜTFİ BEHÇET, AYCAN TOSUNOĞLU

Generating salt-tolerant Nicotiana tabacum and identification of stress-responsive miRNAs in transgenics

Ferhunde AYSİN, Ayşe Elif Erson BENSAN, Füsun EYİDOĞAN, Hüseyin Avni ÖKTEM