Identification of bacterial leaf blight resistance genes in wild rice of eastern India

An experiment was conducted during the 2013 monsoon season to screen 35 wild rice accessions against the BX043 strain of Xanthomonas oryzae pv. Oryzae and identify the presence of bacterial blight resistance genes Xa21, xa13, xa5, Xa4, and Xa2. Among the accessions the area under the disease progress curve ranged from 174.88 (NKSWR-65) to 680.54 (NKSWR-34) compared with resistant controls RP bio-226 (93.92), CRMAS 2231-37 (097.28), CRMAS 2232-71 (098.58), and Tetep (178.62) and susceptible control PB-1 (1065.56). On the basis of disease severity 11 accessions showed moderate resistance, 21 were moderately susceptible, and 3 accessions showed susceptible response to the BX043 strain of Xanthomonas oryzae pv. Oryzae, while none of the accessions were found to be resistant. The genetic frequency of the 5 resistance genes varied from 00.00% to 45.71%. The accession NKSWR-25 harbored 3 resistance genes, xa5, Xa4, and Xa2, while accessions NKSWR-16, NKSWR-32, NKSWR-36, NKSWR-41, NKSWR-42, NKSWR-53, NKSWR-64, NKSWR-97, and NKSWR-99 each possessed 2 resistance genes of those 3 (xa5, Xa4, and Xa2). Therefore, these accessions could be used for the transfer of specific bacterial leaf blight resistance genes into well-adapted high-yielding rice cultivars.

Identification of bacterial leaf blight resistance genes in wild rice of eastern India

An experiment was conducted during the 2013 monsoon season to screen 35 wild rice accessions against the BX043 strain of Xanthomonas oryzae pv. Oryzae and identify the presence of bacterial blight resistance genes Xa21, xa13, xa5, Xa4, and Xa2. Among the accessions the area under the disease progress curve ranged from 174.88 (NKSWR-65) to 680.54 (NKSWR-34) compared with resistant controls RP bio-226 (93.92), CRMAS 2231-37 (097.28), CRMAS 2232-71 (098.58), and Tetep (178.62) and susceptible control PB-1 (1065.56). On the basis of disease severity 11 accessions showed moderate resistance, 21 were moderately susceptible, and 3 accessions showed susceptible response to the BX043 strain of Xanthomonas oryzae pv. Oryzae, while none of the accessions were found to be resistant. The genetic frequency of the 5 resistance genes varied from 00.00% to 45.71%. The accession NKSWR-25 harbored 3 resistance genes, xa5, Xa4, and Xa2, while accessions NKSWR-16, NKSWR-32, NKSWR-36, NKSWR-41, NKSWR-42, NKSWR-53, NKSWR-64, NKSWR-97, and NKSWR-99 each possessed 2 resistance genes of those 3 (xa5, Xa4, and Xa2). Therefore, these accessions could be used for the transfer of specific bacterial leaf blight resistance genes into well-adapted high-yielding rice cultivars.

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  • Blair MW, McCouch SR (1997). Microsatellite and sequence- tagged site markers diagnostic for the rice bacterial leaf blight resistance gene xa-5. Theor Appl Genet 95: 174–184.
  • Chen S, Liu X, Zeng L, Ouyang D, Yang J, Zhu X (2011). Genetic analysis and molecular mapping of a novel recessive gene xa34(t) for resistance against Xanthomonas oryzae pv. oryzae. Theor Appl Genet 122: 1331–1338.
  • Chouhan SK, Singh AK,Singh A, Singh SP, Singh NK, Singh PK (2014). Agro-morphological diversity in wild rice accessions of Eastern Indo-Gangetic region of India. Bangladesh J Bot 43: 337–344.
  • Davierwala AP, Reddy APK, Logu MD, Ranjekar PK, Gupta VS (2001). Marker assisted selection of Bacterial blight resistance genes in rice. Biochem Genet 39: 261–278.
  • Doyle JJ, Doyle JL (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11–15.
  • Fahy PC, Persley GJ (1983). Plant Bacterial Diseases: A Diagnostic Guide. New York, NY, USA: Academic Press.
  • Gnanamanickam SS, Priyadarisini VB, Narayanan NN, Vasudevan P, Kavita S (1999). An overview of bacterial blight disease of rice and strategies for its management. Curr Sci 77: 1435–1444.
  • Goel AK, Rajagopal L, Nagesh N, Sonti RV (2002). Genetic locus encoding functions involved in biosynthesis and outer membrane localization of xanthomonadin in Xanthomonas oryzae pv. oryzae. J Bacteriol 184: 3539–3548.
  • He Q, Li D, Zhu Y, Tan M, Zhang D, Lin X (2006). Fine mapping of Xa2, a bacterial blight resistance gene in rice. Mol Breed 17: 1–6.
  • Huang N, Angeles ER, Domingo J, Magpanthay G, Singh S, Zhang G, Kumaravadivel N, Bennett J, Khush GS (1997). Pyramiding of bacterial blight resistance genes in rice: marker-assisted selection using RFLP and PCR. Theor Appl Genet 95: 313–320.
  • IRRI (1996). Standard Evaluation System for Rice. 4th ed. Manila, the Philippines: International Rice Research Institute.
  • Khush GS (2005). What it will take to feed 5 billion rice consumers in 2030. Plant Mol Biol 59: 1–6.
  • Khush GS, Angeles ER (1999). A new gene for resistance to race 6 of bacterial blight in Oryza sativa L. Rice Genet Newsl 16: 92–93.
  • Lore JS, Vikal Y, Hunjan MS, Goel RK, Bharaj TS, Raina GL (2011). Genotypic and pathotypic diversity of Xanthomonas oryzae pv. oryzae, the cause of bacterial blight of rice in Punjab state of India. J Phytopathol 159: 479–487.
  • Madden LV, Hughes G, Van Den Bosch F (2007). The Study of Plant Disease Epidemics. St Paul, MN, USA: American Phytopathological Society.
  • McCouch SR, Sebastian LS, Ikeda R, Huang N, Imbe T, Coffman WR (1996). Molecular mapping of resistance to rice tungro spherical virus and green leafhopper. Phytopathol 86: 25–30.
  • Mew TW, Vera Cruz CM, Medalla ES (1992). Change in race frequency of Xanthomonas oryzae pv. oryzae in response to rice cultivars planted in the Philippines. Pl Dis 76: 1029–1032.
  • Perumalsamy S, Bharani M, Sudha M, Nagarajan P, Arul L, Saraswathi R, Balasubramanian P, Ramalingam J (2010). Functional marker-assisted selection for bacterial leaf blight resistance genes in rice (Oryza sativa L.). Plant Breed 129: 400–406.
  • Rajpurohit D, Kumar R, Kumar M, Paul P, Awasthi AA, Basha PO, Puri A, Jhang T, Singh K, Dhaliwal HS (2010). Pyramiding of two bacterial blight resistance and a semidwarfing gene in Type 3 Basmati using marker-assisted selection. Euphytica 178: 111–126.
  • Ram T, Laha GS, Deen R, Ramos JM, Veracruz CM, Brar DS (2011). Oryza rufipogon, a valuable source for resistance to bacterial blight of rice. Plant Breed 130: 715–718.
  • Ronald PC, Albano B, Tabien R, Abenes L, Wu KS, McCouch S, Tanksley SD (1992). Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21. Mol Gen Genet 236: 113–120.
  • Sanchez AC, Brar DS, Huang N, Khush GS (2000). Sequence tagged site markers-assisted selection for three bacterial blight resistance genes in rice. Crop Sci 40: 792–797.
  • Shah SMA, Rahman HU, Abassi FM, Akhtar MA, Rafi A, Khan IA (2009). Resistance characterization of wild relatives of rice in response to bacterial blight. Pak J Bot 41: 917–925.
  • Sharma B, Pandey MP (2012). Identification of rice germplasm with resistance to bacterial leaf blight (Xanthomonas oryzae pv. oryzae). Bangladesh J Agril Res 37: 349–353.
  • Singh AK, Gopalakrishnan S, Singh VP, Prabhu KV, Mohapatra T, Singh NK, Sharma TR, Nagarajan M, Vinod KK, Singh D et al. (2011). Marker assisted selection: a paradigm shift in Basmati breeding. Indian J Genet 71: 120–128.
  • Singh AK, Sarma BK, Singh PK, Nandan R (2013). Screening of rice (Oryza sativa L.) germplasms against Xanthomonas oryzae pv. oryzae. J Eco-Friend Agric 8: 86–88.
  • Singh SP, Goel RK, Hunjan MS, Vikal Y, Lore JS (2012). Screening of land races of rice (Oryza sativa) for bacterial blight resistance and marker assisted surveying of known Xa/xa gene(s). Pl Dis Res 27: 209–215.
  • Srinivasan B, Gnanamanickam S (2005). Identification of a new source of resistance in wild rice, Oryza rufipogon to bacterial blight of rice caused by Indian strains of Xanthomonas oryzae pv. oryzae. Curr Sci 88: 1229–1231.
  • Sun X, Yang Z, Wang S, Zhang Q (2003). Identification of a 47-kb DNA fragment containing Xa4, a locus for bacterial blight resistance in rice. Theor Appl Genet 106: 683–687.
  • Thimmegowda PR, Ambika DS, Manjunatha L, Arun RS, Prasad PS, Chandrashekar M (2011). Screening germplasm for resistance to bacterial blight of rice caused by Xanthomonas oryzae pv. oryzae. Int J Sci Nat 2: 659–661.
  • Ullah I, Jamil S, Iqbal MZ, Shaheen HL, Hasni SM, Jabeen S, Mehmood A, Akhter M (2012). Detection of bacterial blight resistance genes in basmati rice landraces. Genet Mol Res 11: 1960–1966.
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  • Yayın Aralığı: Yılda 6 Sayı
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