Genetic variation and population differentiation of Dorystaechas hastata endemic to Turkey: Implications for conservation management

Genetic variation and population differentiation of Dorystaechas hastata endemic to Turkey: Implications for conservation management

Dorystaechas hastata is a relict endemic medicinal and aromatic plant under risk of extinction. Assessment of genetic diversity and association between geographic distribution and genetic variation could benefit to the conservation efforts. The objectives of this study were to assess genetic diversity and population differentiation of the species in its natural habitat. The genetic structure of 56 accessions sampled from 15 populations encompassing whole natural distribution of the species were analyzed with both sequencerelated amplified polymorphism (SRAP) and inter-primer binding site (iPBS) molecular markers. The 146 polymorphic markers were generated by 13 SRAP and 11 iPBS primers. The similarity of the accessions ranged from 53% to 91%, with a mean similarity value of 72%. The populations formed two main groups. Principle component analyses (PCoA) and cluster analysis explained 64.9% and 9.4% of the variations with the first and second eigen vectors. The overall genetic diversity of D. hastata was relatively high at the species level, while it is relatively low at the population level. The pairwise allelic differences between populations (FST), an indication of population differentiation, ranged from 0.15 (Tünektepe -Hacısekiler) to 0.76 (Altınyaka - Sivridağ). The AMOVA results indicated that 51% and 49% of the total variation resided among and within populations, respectively. Geographic distance and/or isolation seem to have strong effect on the genetic differentiation among populations. Results indicate that a representative core collection can be established without significant compromise on genetic diversity. Having the highest genetic diversity Tahtalı, Güllük (Termessos), Beldibi, and Beycik populations must be conserved immediately in nature and might be used to initiate domestication/breeding programs.

___

  • Agarwal M, Shrivastava N, Padh H (2008). Advances in molecular marker techniques and their applications in plant sciences. Plant Cell Reports 27: 617.
  • Aghaei Z, Talebi M, Rahimmalek M (2017). Assessment of genetic diversity within and among sage (Salvia) species using SRAP markers. Plant Genetic Resources 15: 279-282.
  • Aguilar R, Quesada M, Ashworth L, Herrerias-Diego Y, Lobo J (2008). Genetic consequences of habitat fragmentation in plant populations: susceptible signals in plant traits and methodological approaches. Molecular Ecology 17:5177-1588.
  • Barrett SCH, Kohn JR (1991). Genetic and evolutionary consequences of small population size in plants implication for conservation. In: Falk DA, Holsinger KE (editors). Genetics and Conservation of Rare Plants. New York, USA: Oxford University Press, pp. 3-30.
  • Barrett SCH (2003). Mating strategies in flowering plants: the outcrossing-selfing paradigm and beyond. Philosophical Transactions of the Royal Society B: Biological Sciences, 358, 991-1004.
  • Barrett SCH (2010). Understanding plant reproductive diversity. Philosophical Transactions of the Royal Society B: Biological Sciences 365: 99-109.
  • Borna F, Luo S, Ahmad NM, Nazeri V, Shokrpour M et al. (2017). Genetic diversity in populations of the medicinal plant Leonurus cardiaca L. revealed by inter-primer binding site (iPBS) markers. Genetic Resources and Crop Evolution 64: 479-492.
  • Celep F, Dirmenci T (2017). Systematic and biogeographic overview of Lamiaceae in Turkey. Natural Volatiles and Essential Oils 4 (4):14-27.
  • Chen SY, Dai TX, Chang YT, Wang SS, Ou SL et al. (2013). Genetic diversity among Ocimum species based on ISSR, RAPD and SRAP markers. Australian Journal of Crop Science 7: 1463- 1471.
  • Cruzan MB (2001). Population size and fragmentation thresholds for the maintenance of genetic diversity in the herbaceous endemic Scutellaria montana (Lamiaceae). Evolution 55: 1569- 1580.
  • Davis PH (1971). Distribution Patterns in Anatolia with Particular References to Endemism. In: Davis PH, Harper PC, Hedge IC (editors). Plant Life of South- west Asia. Edinburgh, UK: The Botanical Society of Edinburgh, pp. 15-27.
  • De Vrient L, Lemay MA, Jean M, Renaut S, Pellerin S et al. (2017). Population isolation shapes plant genetics, phenotype and germination in naturally patchy ecosystems. Journal of Plant Ecology 10: 649-659.
  • Doğan NY, Kandemir A, Osman E (2016). Genetic diversity and variability among populations and ecological characteristics of the Uechtritzia armena Freyn (Asteraceae) endemic to Turkey. Research Journal of Biology 4: 20-27.
  • Doyle JJ, Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus 12:13-15.
  • Ekim T, Koyuncu M, Vural M, Duman H, Aytaç Z et al. (2000). Red data of Turkish plants, Ankara, Turkey.
  • Ellstrand NC, Elam DR (1993). Population genetic consequences of small population-size: implications for plant conservation. Annual Review of Ecology and Systematics 24: 217-242.
  • Erbano M, e Schühli GS, dos Santos EP (2015). Genetic variability and population Structure of Salvia lachnostachys: implications for breeding and conservation programs. International Journal of Molecular Science 16: 7839-7850.
  • Erdağ BB, Emek YÇ, Aydoğan SK (2010). Clonal propagation of Dorystoechas hastata via axillary shoot proliferation. Turkish Journal of Botany 34: 233-240.
  • Erkan N, Akgonen S, Ovat S, Goksel G, Ayranci E (2011). Phenolic compounds profile and antioxidant activity of Dorystoechas hastata L. Boiss et Heldr. Food Research International 44: 3013-3020.
  • Excoffier L, Laval G, Schneider S (2005). Arlequin version 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1: 47–50.
  • Frankham R (1997). Do island populations have less genetic variation than mainland populations? Heredity 78: 311-327. Gonzalez-Astorga J, Nunez-Farfan J (2001). Effects of habitat fragmentation on the genetic structure of the narrow endemics Brongniartia vazquezii. Evolutionary Ecology Research 3: 861- 872.
  • Hamner RM, Pichler FB, Heimeier D, Constantine R, Baker CS (2012). Genetic differentiation and limited gene flow among fragmented populations of New Zealand endemic Hector’s and Maui’s dolphins. Conservation Genetics 13: 987-1002.
  • Hamrick JL, Linhart YB, Mitton JB (1979). Relationships between life history characteristics and electrophoretically detectable genetic variation in plants. Annual Review of Ecology and Systematics 10: 173-200.
  • Hedge IC (1982). Dorystoechas Boiss. & Heldr. ex Benth. Rev. In: Davis D (Editor) Flora of Turkey, Vol. 7. Edinburgh, UK: Edinburgh University Press, pp. 461-462.
  • Helm A, Oja T, Saar L, Takkis K, Talve T et al. (2009). Human influence lowers plant genetic diversity in communities with extinction debt. Journal of Ecology 97: 1329-1336.
  • Hnia C, Mohamed B (2011). Genetic diversity of Lavandula multifida L. (Lamiaceae) in Tunisia: implication for conservation. African Journal of Ecology 49: 10-20.
  • Hughes AR, Inouye BD, Johnson-Marc TJ, Underwood N, Vellend M (2008). Ecological consequences of genetic diversity. Ecology Letters 11: 609-623.
  • Huson DH, Bryant D (2006). Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution 23: 254-267.
  • IUCN (2019). IUCN Standards and Petitions Committee. 2019. Guidelines for Using the IUCN Red List Categories and Criteria. Version 14. Fontainebleau, France: Standards and Petitions Committee.
  • Jeong JH, Lee BC, Yoo KO, Jang SK, Kim ZS (2012). Influence of smallscale habitat patchiness on the genetic diversity of the Korean endemic species Saussurea chabyoungsanica (Asteraceae). Biochemical Systematics and Ecology 43: 14-24.
  • Johnson DE (1998). Applied Multivariate Methods for Data Analysis. New York, USA: Duxbury Press.
  • Jolivet C, Bernasconi G (2007). Molecular and quantitative genetic differentiation in European populations of Silene latifolia (Caryophyllaceae). Journal of Human Genetics 177: 1239-1247.
  • Jorge A, Loureiro J, Castro S (2015). Flower biology and breeding system of Salvia sclareoides Brot. (Lamiaceae). Plant Systematics and Evolution 301: 1485-1497.
  • Kalendar R, Flavell AJ, Ellis THN, Sjakste T, Moisy C et al. (2011). Analysis of plant diversity with retrotransposon-based molecular markers. Heredity 106: 520-530.
  • Karagözler AA, Erbağ B, Emek YÇ, Uygun DA (2008). Antioxidant activity and proline content of leaf extracts from Dorystoechas hastata. Food Chemistry 111: 400-407.
  • Karron JD, Linhart YB, Chaulk CA, Robertson CA (1988). Genetic structure of populations of geographically restricted and widespread species of Astragalus (Fabaceae). American Journal of Botany 75: 1114-1119.
  • Koohdar F, Sheidai M, Talebi SM, Noormohammadi, Z, Ghasemzadeh-Baraki S (2016). Genetic diversity, population structure and morphological variability in the Lallemantia royleana (Lamiaceae) from Iran. Phytologia Balcanica 22: 29- 38.
  • Ledig FT, Conkle MT (1983). Gene diversity and genetic structure in a narrow endemic, Torrey pine (Pinus torreyana Parry ex Carr.). Evolution 37: 79-85.
  • Linhart YB, Premoli AC (1993). Comparison of the genetic variability in Aletes humilis, a rare plant species, and its common relative Aletes acaulis in Colorado. American Journal of Botany 80: 598-605.
  • Loeschcke V (1987). Genetic Constraints on Adaptive Evolution. Berlin, Heidelberg, Germany: Springer-Verlag.
  • Mader E, Lohwasser U, Börner A, Novak J (2010). Population structures of genebank accessions of Salvia officinalis L. (Lamiaceae) revealed by high resolution melting analysis. Biochemical Systematics and Ecology 38: 178-186.
  • Mantel N (1967). The detection of disease clustering and a generalized regression approach. Cancer Research 27: 209-220.
  • Meriçli F, Meriçli AH (1986). The essential oil of Dorystoechas hastata. Planta Medica 52: 506.
  • Nei M (1978). Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583- 590.
  • Ouborg NJ, Vergeer P, Mix C (2006). The rough edges of the conservation genetics paradigm for plants. Journal of Ecology 94: 1233-1248.
  • Ozcan MM, Chalchat JC, Figueredo G, Bagci Y, Dural H et al. (2016). Chemical composition of the essential oil of the flowers and leaves of Calba tea (Dorystoechas hastata Boiss & Helder. ex Bentham). Journal of Essential Oil-Bearing Plants 19: 782-785.
  • Öztürk NK (1990). Composition of Essential Oil of Dorystoechas hastata. M.Sc, Anadolu University, Eskişehir, Turkey.
  • Petit RJ, Duminil J, Fineschi S, Hampe A, Salvini D et al. (2005). Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations. Molecular Ecology 14: 689-701.
  • Pleasants JM, Wendel JF (1989). Genetic diversity in a clonal narrow endemic, Erythronium propullans, and in its widespread progenitor, Erythronium albinum. American Journal of Botany 76: 1136-1151.
  • Premoli AC, Souto CP, Allnutt TR, Newton AC (2001). Effects of population disjunction on isozyme variation in the widespread Pilgerodendron uviferum. Heredity 8: 337-343.
  • Rohlf FJ (2000). NTSYS-pc: Numerical Taxonomy and Multivariate Analysis System Version 2.1. Setauket, New York, USA: Exeter Publishing.
  • Schaal B (1974). Balancing selection and population structure in Liatris cylindracea. PhD, Yale University, New Haven, USA.
  • Selim C, Sever Mutlu S (2016). Evaluation of association between morphological traits and geographic characters in relict endemic Dorystoechas hastata. In: Efe R, Matchavariani L, Yaldır A, Lévai L (Editors). Developments in Science and Engineering, Sofia, Bulgaria: St. Kliment Ohridski University Press, pp. 40-48.
  • Selim C, Sever Mutlu S, Deniz IG (2021). Morphological diversity of Dorystoechas hastata, a relict endemic species, across habitat variability. Polish Journal of Environmental Studies 30 (3): 1-14.
  • Sheidai M, Taban F, Talebi SM, Noormohammadi Z (2016). Genetic and morphological diversity in Stachys lavandulifolia (Lamiaceae) populations. Biologija 62 (1): 9-24.
  • Spielman D, Brook BW, Frankham R (2004). Most species are not driven to extinction before genetic factors impact them. Proceedings of the National Academy of Sciences 101: 15261- 15264.
  • Strıd A (1987). New taxa and new records from the mountains of SW and SC Turkey. Botanische Jahrbücher fur Systematik 108: 301-341.
  • Szczecińska M, Szczecińska G, Wolosz K, Sawicki J (2016). genetic diversity and population structure of the rare and endangered plant species Pulsatilla patens (L.) mill in East Central Europe. PLoS One 11: 1-24.
  • Şenol SG, Eroğlu V, Şentürk O, Kaçmaz F, Avcı AB (2017). The pollination and reproduction success of Salvia sclarea. Biological Diversity and Conservation 10:130-135.
  • Tabaripour R, Sheidai M, Talebi SM, Noormohammadi Z (2018). Genetic divergence and speciation within Ziziphora capitata (Lamiaceae): Molecular and micromorphological evidences. Biodiversitas 19: 747-755.
  • Talebi M, Rahimmalek M, Norouzi M (2015). Genetic diversity of Thymus daenensis subsp. daenensis using SRAP markers. Biologia 70: 453-459.
  • Torres-Diaz C, Ruiz E, Gonzalez F, Fuentes G, Carieves LA (2007). Genetic diversity in Nothofagus alessandrii (Fagaceae), an endangered endemic tree species of the coastal maulino forest of Central Chile. Annals of Botany 100: 75-82.
  • Turchetto C, Segatto ALA, Mader G, Rodrigues DM, Bonatto SL et al. (2016). High levels of genetic diversity and population structure in an endemic and rare species: implications for conservation. AoB Plants 8: plw002.
  • Uluben A, Meriçli AH, Meriçli F (2004). Diterpenes and Norditerpenes from the Roots of Dorystoechas hastata. Pharmazie 59: 301.
  • Van Zonneveld M, Scheldeman X, Escribano P, Viruel MA, Van Damme P et al. 2012. Mapping genetic diversity of Cherimoya (Annona cherimola Mill.). Aplication of spatial a spatial analysis of conservation and use of plant genetic resources. PLoS ONE 7: e29845.
  • Venturella P, Venturella G, Marino MS, Meriçli AH, Çubukçu B (1988). Phytochemical Investigation of the Labiatae Dorystoechas hastata. Giorniol Botany 122: 291-294.
  • Verma S, Karihaloo JL, Tiwari SK, Magotra R, Koul AK (2007). Genetic diversity in Eremostachys superba Royle ex Benth. (Lamiaceae), an endangered Himalayan species, as assessed by RAPD. Genetic Resources and Crop Evolution 54: 221-229.
  • Vinceti B, Loo J, Gaisberger H, Van Zonneveld MJ, Schueler S et al. (2013). Conservation priorites for Prunus africana defined with the aid of spatial analysis of genetic data and climatic variables. PLoS ONE. 8, e59987.
  • Wang Y, Yan G, (2013). Genetic diversity and population structure of Opisthopappus longilobus and Opisthopappus taihangensis (Asteraceae) in China determined using sequence related amplified polymorphism markers. Biochemical Systematics and Ecology 49: 115-124.
  • Weising K, Nybom H, Wolff K, Kahl G (2005). DNA Fingerprinting in Plants: Principles, Methods, and Applications. 2nd ed. Boca Raton, USA: CRC Press.
  • Wolf AT, Howe RW, Hamrick JL (2000). Genetic diversity and population structure of the serpentine endemic Calystegia collina (Convolvulaceae) in Northern California. American Journal of Botany 87: 1138-1146.
  • Wu Z, Yu D, Wang Z, Li X, Xu X (2015). Great influence of geographic isolation on the genetic differentiation of Myriophyllum spicatum under a steep environmental gradient. Scientific Reports 5:1-9.
  • Yang YQ, Huang BH, Yui ZX, Liao PC (2015). Inferences of demographic history and fine-scale landscape genetics in Cycas panzhihuaensis and implications for its conservation. Tree Genetics and Genomes 11: 78-89.
  • Yeh FC, Yang RC, Boyle T, Timothy BJ, Ye ZH (1997). Popgene, the user-friendly shareware for population genetic analysis. Molecular Biology and Biotechnology Centre, University of Alberta.
  • Zahumenická P, Fernández E, Šedivá J, Žiarovská J, Ros-Santaella JL et al. (2018). Morphological, physiological and genomic comparisons between diploids and induced tetraploids in Anemone sylvestris L. Plant Cell Tissue and Organ Culture 132: 317-327.
  • Zhang HY, Tian K, Yu Y, Li LY, Yang YM (2009). Genetic diversity among natural populations of Ottelia acuminata (Gaghep.) Dandy revealed by ISSR. African Journal of Biotechnology 8 (22): 6089-6093.
Turkish Journal of Botany-Cover
  • ISSN: 1300-008X
  • Yayın Aralığı: Yılda 6 Sayı
  • Yayıncı: TÜBİTAK
Sayıdaki Diğer Makaleler

A new Teucrium L. (Lamiaceae) Species from South Anatolia (Turkey)

Ömer ÇEÇEN, Taner ÖZCAN

Phylogenetic relationships among Mexican species of the genus Sechium (Cucurbitaceae)

Juan Porfirio LEGARIA SOLANO, Jorge CADENA IÑIGUEZ, Luis Ángel BARRERA GUZMÁN, Jaime SAHAGÚN CASTELLANOS

A new species of foliicolous lichenized fungi from southwest China: Calopadia ruiliensis sp. nov.

Hai-Xia WU, Wei-Bin REN, Xin-Hao LI, Zi-Xiang YANG

Evaluation of bermudagrass [Cynodon (L.) Rich] accessions with different ploidy levels

Nedim MUTLU, Songul SEVER MUTLU, Osman GÜLŞEN, Cansu BÜLBÜL

Traditional herbal remedies used in kidney diseases in Turkey: an overview

Bahar GÜRDAL, Şükran KÜLTÜR, Aynur SARI, Gülay MELİKOĞLU

Concomitant accumulations of ions, osmoprotectants and antioxidant system-related substances provide salt tolerance capability to succulent extreme-halophyte Scorzonera hieraciifolia

Rabiye TERZİ, Cansu ALTUNTAŞ

Genetic variation and population differentiation of Dorystaechas hastata endemic to Turkey: Implications for conservation management

Hasan MEYDAN, Ceren SELİM, Nedim MUTLU, Songül SEVER MUTLU, İsmail Gökhan DENİZ

Applications of CRISPR/Cas9-based genome editing in the plant biology

Yingzhuan ZHENG, Qianqian LI, Mingwang YE, Aie CHEN, Hongyang WANG

Genetic structure of Zannichellia L. populations according to mountain barriers in Iran as revealed by ISSR and SRAP markers

Shabnam ABBASI, Saeed AFSHARZADEH, Mehri DINARVAND