Molecular cloning and expression analysis of FvMYB1 from Fraxinus velutina Torr.

V-myb avian myeloblastosis viral oncogene homolog (MYB) transcription factors play important roles in the processes of plant growth, development, and stress responses. In this study, a full-length cDNA sequence of a MYB gene, designated FvMYB1, was isolated from Arizona ash (Fraxinus velutina Torr.) for the first time. Sequence analysis showed that the deduced amino acid sequence of FvMYB1 encoded novel MYB proteins with single DNA binding domains. Based on the R3 domain amino acid sequence, the FvMYB1 was closely related to some proteins whose functions were known. The expression pattern of FvMYB1 in different organs of Arizona ash was analyzed by semiquantitative RT-PCR and real-time PCR (qRT-PCR). Results showed that this gene was widely distributed in all the tested organs and the expression level of FvMYB1 was the highest in stems and the lowest in roots. The gene expression level decreased dramatically in roots under salt treatment (300 mM, 24 h), while no obvious change was observed in stems. Subcellular localization indicated that FvMYB1 was localized in the nucleus. This study will lead to further research in resistance to abiotic stress in Arizona ash.

Molecular cloning and expression analysis of FvMYB1 from Fraxinus velutina Torr.

V-myb avian myeloblastosis viral oncogene homolog (MYB) transcription factors play important roles in the processes of plant growth, development, and stress responses. In this study, a full-length cDNA sequence of a MYB gene, designated FvMYB1, was isolated from Arizona ash (Fraxinus velutina Torr.) for the first time. Sequence analysis showed that the deduced amino acid sequence of FvMYB1 encoded novel MYB proteins with single DNA binding domains. Based on the R3 domain amino acid sequence, the FvMYB1 was closely related to some proteins whose functions were known. The expression pattern of FvMYB1 in different organs of Arizona ash was analyzed by semiquantitative RT-PCR and real-time PCR (qRT-PCR). Results showed that this gene was widely distributed in all the tested organs and the expression level of FvMYB1 was the highest in stems and the lowest in roots. The gene expression level decreased dramatically in roots under salt treatment (300 mM, 24 h), while no obvious change was observed in stems. Subcellular localization indicated that FvMYB1 was localized in the nucleus. This study will lead to further research in resistance to abiotic stress in Arizona ash.

___

  • Balok CA, Hilaire RS (2002) Drought responses among seven southwestern landscape tree taxa. J Am Soc Hortic Sci 127: 211–218.
  • Bilaud T, Koering CE, Binet BE, Ancelin K, Pollice A, Gasser SM, Gilson E (1996) The telobox, a Myb-related telomeric DNA binding motif found in proteins from yeast, plants and human. Nucleic Acids Res 24: 1294–1303.
  • Boyer LA, Latek RR, Peterson CL (2004) The SANT domain: a unique histone-tail-binding module. Nat Rev Mol Cell Bio 5: 158–163.
  • Calin OM, Hank WB (2005) The Terminal acidic SANT 1 (Tacs1) gene of maize is expressed in tissues containing meristems and encodes an acidic SANT domain similar to some chromatinremodeling complex proteins. Biochim Biophys Acta 1727: 81–
  • Dai X, Xu Y, Ma Q, Xu W, Wang T, Xue Y, Kang C (2007) Overexpression of an R1R2R3 MYB gene, OsMYB3R-2, increases tolerance to freezing, drought, and salt stress in transgenic Arabidopsis. Plant Physiol 143: 1739–1751.
  • Ding ZJ, Doyle MR, Amasino RM, Davis SJ (2007) A complex genetic interaction between Arabidopsis thaliana TOC1 and CCA1/ LHY in driving the circadian clock and in output regulation. Genetics 176: 1501–1510.
  • Dong JS, Seok JM, Seyoun H (2011) Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol 155: 1421–1432.
  • Dubouzet JG, Sakuma Y, Ito Y, Kasuga M, Dubouzet EG, Miura S, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2003) OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. Plant J 33: 751–763.
  • Eldem V, Okay S, Unver T (2012) Plant microRNAs: new players in functional genomics. Turk J Agric For 36: 1–24.
  • Esch JJ, Chen M, Sanders M, Hillestad M, Ndkium S, Idelkope B, Neizer J, Marks MD (2003) A contradictory GLABRA3 allele helps define gene interactions controlling trichome development in Arabidopsis. Development 130: 5885–5894.
  • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783–791.
  • Jin H, Martin C (1999) Multifunctionality and diversity within the plant MYB-gene family. Plant Mol Biol 41: 577–585.
  • Jung JH, Seo PJ, Park CM (2009) MicroRNA biogenesis and function in higher plants. Plant Biotechnol Rep 3: 111–126.
  • Katja W, Simona D, Florian G, Jens T, Christian F, Martin H (2009) Functional diversity of R3 single-repeat genes in trichome development. Development 136: 1487–1496.
  • Kazuo S, Kazuko YS (2007) Gene networks involved in drought stress response and tolerance. J Exp Bot 58: 221–227.
  • Kranz H, Scholz K, Weisshaar B (2000) c-MYB oncogene-like genes encoding 3 MYB repeats occur in all major plant lineages. Plant J 21: 231–235.
  • Lu CA, Ho TH, Ho SL, Yu SM (2002) Three novel MYB proteins with one DNA binding repeat mediate sugar and hormone regulation of alpha-amylase gene expression. Plant Cell 14: 1963–1980.
  • Ma Q, Dai X, Xu Y, Guo J, Liu Y, Chen N, Xiao J, Zhang D, Xu Z, Zhang X, Chong K (2009) Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes. Plant Physiol 150: 244–256.
  • Martin C, Paz AJ (1997) MYB transcription factors in plants. Trends Genet 13: 67–73.
  • Nakashima K, Tran LS, Van Nguyen D, Fujita M, Maruyama K, Todaka D, Ito Y, Hayashi N, Shinozaki K, Yamaguchi SK (2007) Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice. Plant J 51: 617–630.
  • Qin YX, Wang MC, Tian YC, He WX, Han L, Xia GM (2012) Over-expression of TaMYB33 encoding a novel wheat MYB transcription factor increases salt and drought tolerance in Arabidopsis. Mol Biol Rep 39: 7183–7192.
  • Qu LJ, Zhu YX (2006) Transcription factor families in Arabidopsis: major progress and outstanding issues for future research. Curr Opin Plant Biol 9: 544–549.
  • Rivka B, Irina S, Tali E, Amit G, Inna C, Sara S, Erich G, Yehiam S (2005) The tomato early fruit specific gene Lefsm1 defines a novel class of plant-specific SANT/MYB domain proteins. Planta 221: 197–211.
  • Rose A, Meier I, Wienand U (1999) The tomato I-box binding factor LeMYBI is a member of a novel class of myb-like proteins. Plant J 20: 641–652.
  • Saitou N and Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406–425.
  • Schaffer R, Ramsay N, Samach A, Corden S, Putterill J, Carre IA, Coupland G (1998) The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering. Cell 93: 1219–1229.
  • Schellmann S, Hulskamp M, Uhrig J (2007) Epidermal pattern formation in the root and shoot of Arabidopsis. Biochem Soc Trans 35: 146–148.
  • Shakirov EV, Surovtseva YV, Osbun N, Shippen DE (2005) The Arabidopsis Pot1 and Pot2 proteins function in telomere length homeostasis and chromosome end protection. Mol Cell Biol 25: 7725–7733.
  • Shen J, Xu XF, Li TZ, Cao DM, Han ZH (2008) An MYB transcription factor from Malus xiaojinensis has a potential role in iron nutrition. J Integr Plant Biol 50: 1300–1306.
  • Shuichi M, Naoko W, Hitomi J, Hajime M, Shinji A (2011) An extensive analysis of R2R3-M YB regulatory genes from Fagus crenata. Tree Genet Genomes 7: 307–321.
  • Song SY, Chen Y, Chen J, Dai XY, Zhang WH (2011) Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress. Planta 234: 331–345.
  • Stracke R, Werber M, Weisshaar B (2001) The R2R3-MYB gene family in Arabidopsis thaliana. Curr Opin Plant Biol 4: 447– 4
  • Subramanyam K, Sailaja KV, Subramanyam K, Rao DM, Lakshmidevi K (2011) Ectopic expression of an osmotin gene leads to enhanced salt tolerance in transgenic chili pepper (Capsicum annum L.). Plant Cell Tiss Org 105: 181–192.
  • Taji T, Seki M, Satou M, Sakurai T, Kobayashi M, Ishiyama K, Narusaka Y, Narusaka M, Zhu JK, Shinozaki K (2004) Comparative genomics in salt tolerance between arabidopsis and arabidopsis-related halophyte salt cress using arabidopsis microarray. Plant Physiol 135: 1697–1709.
  • Tamura K Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596–1599.
  • Tominaga R, Iwata M, Okada K and Wada T (2007) Functional analysis of the epidermal-specific MYB genes CAPRICE and WEREWOLF in Arabidopsis. Plant Cell 19: 2264–2277.
  • Vannini C, Locatelli F, Bracale M, Magnani E, Marsoni M, Osnato M, Mattana M, Baldoni E, Coraggio I (2004) Overexpression of the rice Osmyb4 gene increases chilling and freezing tolerance of Arabidopsis thaliana plants. Plant J 37: 115–127.
  • Wada T, Kurata T, Tominaga R, Koshino KY, Tachibana T, Goto K, Marks MD, Shimura Y, Okada K (2002) Role of a positive regulator of root hair development, CAPRICE, in Arabidopsis root epidermal cell differentiation. Development 129: 5409– 54
  • Wang KL, Bolitho K, Grafton K, Kortstee A, Karunairetnam S, McGhie TK, Espley RV, Hellens RP, Allan AC (2010) An R2R3 MYB transcription factor associated with regulation of the anthocyanin biosynthetic pathway in Rosaceae. BMC Plant Biol 10: 50.
  • Wang ZY, Tobin EM (1998) Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression. Cell 93: 1207–1217.
  • Wu LY, Cao BH (2005) Germination characteristics of Fraxinus velutina and Melia azedarach seeds in saline land. Chinese Bulletin of Botany 22: 668–672.
  • Xiang Y, Tang N, Du H, Ye HY, Xiong LZ (2008) Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice. Plant Physiol 148: 1938–1952.
  • Yan H, Zhang H, Wang Q, Jian H, Qiu X, Wang J, Tang K (2011) Isolation and identification of a putative scent-related gene RhMYB1 from rose. Mol Biol Rep 38: 4475–4482.
  • Yi J, Derynck MR, Li X, Telmer P, Marsolais F, Dhaubhadel S (2010) A single-repeat MYB transcription factor, GmMYB176, regulates CHS8 gene expression and affects isoflavonoid biosynthesis in soybean. Plant J 62: 1019–1034.
Turkish Journal of Agriculture and Forestry-Cover
  • ISSN: 1300-011X
  • Yayın Aralığı: Yılda 6 Sayı
  • Yayıncı: TÜBİTAK
Sayıdaki Diğer Makaleler

Is Quercus virgiliana a distinct morphological and genetic entity among European white oaks?

Cristian Mihai ENESCU, Alexandru Lucian CURTU, Neculae SOFLETEA

Marker-assisted breeding of a durum wheat cultivar for γ-gliadin and LMW-glutenin proteins affecting pasta quality

Ahmet YILDIRIM, Özlem ATEŞ SÖNMEZOĞLU, Abdulvahit SAYASLAN

Evaluation of entomopathogenic fungi against the sycamore lace bug, Corythucha ciliata (Say) (Hemiptera: Tingidae)

Ali SEVİM, İsmail DEMİR, Emine SÖNMEZ, Seda KOCAÇEVİK, Zihni DEMİRBAĞ

Possibilities for reducing tractor engine friction losses at cold start using an ultrasonic irradiation technique

Florin MARIASIU

Study of postharvest changes in the chemical composition of persimmon by HPLC

Hande BALTACIOĞLU, Nevzat ARTIK

Evaluation of yield and quality parameters of phosphorous-solubilizing and N-fixing bacteria inoculated in wheat (Triticum aestivum L.)

Sancar BULUT

Seed priming improves irrigation water use efficiency, yield, and yield components of late-sown wheat under limited water conditions

Hakoomat ALI, Nadeem IQBAL, Ahmad Naeem SHAHZAD, Naeem SARWAR, Shakeel AHMAD, Athar MEHMOOD

Marker-assisted breeding of a durum wheat cultivar for γ-gliadin and LMW-glutenin proteins affecting pasta quality

Ahmet YILDIRIM, Özlem ATEŞ SÖNMEZOĞLU, Abdulvahit SAYASLAN

Morphological characterization of cherry rootstock candidates selected from Samsun Province in Turkey

Aysen KOÇ, Şükriye BİLGENER

Seed and germination characteristics of wild Onobrychis taxa in Turkey

Süleyman AVCI, Mehmet Demir KAYA