Evidence for the origin of the B genome of bread wheat based on chloroplast DNA

The hexaploid bread wheat Triticum aestivum L. (AABBDD) is thought to have originated through one or more rare hybridization events between Aegilops tauschii (DD) and the tetraploid Emmer wheat T. turgidum subsp. dicoccon (AABB). The progenitor of the A genome of T. aestivum has generally been accepted to be T. urartu. The origin of the B genome, however, is controversial and still relatively unknown. Research has found the B genome in T. turgidum to be closely similar to the S genome in section Sitopsis of Aegilops L.; the Sitopsis diploid species were thus proposed as the probable maternal parent in the original cross that resulted in the tetraploid T. turgidum. Moreover, the donor of the cytoplasm of T. turgidum and T. aestivum was also the donor of most, if not all, of the B genome chromosomes. The present study attempts to investigate the polymorphism of chloroplast DNA between T. aestivum and 8 different Aegilops species using cleaved amplified polymorphic sequence (CAPS) and sequencing on 28 chloroplast loci in order to identify the chloroplast donor (B genome donor) of bread wheat. A phylogenetic tree based on the data generated demonstrates that Ae. speltoides was distinct from the other Aegilops species analyzed and the most closely related to bread wheat. It can be concluded that Ae. speltoides may be the chloroplast donor to bread wheat and the donor of its B genome. Understanding hexaploid wheat origin would further its genetic improvement and is also important for the artificial development of synthetic forms.

Anahtar Kelimeler:

Key words: Aegilops, CAPS, chloroplast DNA, identification, sequencing

Evidence for the origin of the B genome of bread wheat based on chloroplast DNA

Keywords:

Key words: Aegilops, CAPS, chloroplast DNA, identification, sequencing,

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Anikster Y, Wahl I (1979) Coevolution of the rust fungi on Gramineae and Liliaceae and their hosts. Annu Rev Phytopathol 17: 367- 403.
Badaeva ED, Friebe B, Gill BS (1996a) Genome diff erentiation in Aegilops. 1. Distribution of highly repetitive DNA sequences on chromosomes of diploid species. Genome 39: 293-306.
Badaeva ED, Friebe B, Gill BS (1996b) Genome diff erentiation in Aegilops. 2. Physical mapping of 5S and 18S-26S ribosomal RNA gene families in diploid species. Genome 39: 1150-1158.
Bahrman N, Zivy M, Th iellement H (1988) Genetic relationships in the Sitopsis section of Triticum and the origin of the B genome of polyploid wheats. Heredity 61: 473-480.
BaumBR, Edwards T, Johnson DA (2009) Phylogenetic relationships among diploid Aegilops species inferred from 5S rDNA units. Mol Phylogenet Evol 53: 34-44.
Blake NK, Lehfeldt BR, Lavin M, Talbert LE (1999) Phylogenetic reconstruction based on low copy DNA sequence data in an allopolyploid: Th e B genome of wheat. Genome 42: 351-360.
Bowman CM, Bonnard G, Dyer TA (1983) Chloroplast DNA variation between species of Triticum and Aegilops - location of the variation on the chloroplast genome and its relevance to the inheritance and classifi cation of the cytoplasm. Th
Chen PD, Gill BS (1983) Th e origin of chromosome 4A and genome B and G of tetraploid wheats. In: Proceedings of the 6th International Wheat Genetics Symposium, Kyoto, Japan, pp. 39-48.
Chen K, Gray JC, Wildman SG (1975) Fraction I protein and the origin of polyploid wheats. Science 190: 1304-1306.
Chiang TY, Schaal BA, Peng CI (1998) Universal primers for amplifi cation and sequencing a noncoding spacer between the atpB and rbcL genes of chloroplast DNA. Bot Bull Acad Sinica 39: 245-250.
Dennis ES, Gerlach WL, Peacock WJ (1980) Identical polypyrimidine- polypurine satellite DNA in wheat and barley. Heredity 44: 349-366.
Eig AV (1929) Monographisch-kritische Ubersicht der Gattung Aegilops. Verlag des Repertoriums, Berlin.
Feldman M (1978) New evidence on the origin of the B-genome of wheat. Proceedings of the 5th International Wheat Genetics Symposium, New Delhi 1: 120-132.
Fernandez-Calvin B, Orellana J (1990) High-molecular-weight glutenin subunit variation in the Sitopsis section of Aegilops - implications for the origin of the B-genome of wheat. Heredity 65: 455-463.
Friebe B, Gill BS (1996) Chromosome banding and genome analysis in diploid and cultivated polyploid wheats, pp. 39-60. In: Methods of Genome Analysis in Plants (Ed. PP Jauhar). CRC Press, Boca Raton, FL, USA.
Giorgi B, Bozzini A (1969) Karyotype analysis in Triticum. III. Analysis of the presumed diploid progenitors of polyploid wheats. Cytologia 22: 289-306.
GolovninaKA, Glushkov SA, Blinov AG, Mayorov VI, Adkison LR, Goncharov NP(2007) Molecular phylogeny of the genus Triticum L. Plant Syst Evol 264: 195-216.
Goncharov NP, Golovnina KA, Kilian B, Glushkov S, Blinov A, Shumny VK (2008). Evolutionary History of Wheats - the Main Cereal of Mankind. In: Biosphere Origin and Evolution (Ed. DN Springer) 6: 407-419.
Gulbitti-Onarici S, Sancak C, Sumer S, Ozcan S (2009) Phylogenetic relationships of some wild wheat species based on the internal transcribed spacer sequences of nrDNA. Curr Sci 96: 794-800.
Gulbitti-Onarici S, Sumer S, Ozcan S (2007) Phylogenetic relationships among some wild wheat species revealed by AFLP markers. Bot J Linn Soc 153: 67-72.
Haider N (2003) Development and Use of Universal Primers in Plants. PhD Dissertation. Reading University, Reading, UK.
Haider N, Nabulsi I (2008) Identifi cation of Aegilops L. species and Triticum aestivum L. based on chloroplast DNA. Genet Resour Crop Evol 55: 537-549.
HaiderN, Nabulsi I, MirAli N (2010) Comparison of the effi ciency of A-PAGE and SDS-PAGE, ISSRs and RAPDs in resolving genetic relationships among Triticum and Aegilops species. Genet Resour Crop Evol 57:1023-1039.
HaiderN, Wilkinson MJ (2011) A set of plastid DNA-specifi c universal primers for fl owering plants. Russ J Genet (in press).
Harlan JR (1992) Origin and processes of domestication. In: Grass Evolution and Domestication (Ed. GP Chapman). Cambridge University Press, Cambridge.
Huang S, Sirikhachornkit A, Su X, Faris JD, Gill BS, Haselkorn R (2002) Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploid wheat. P Nat Acad Sci USA 99: 8133-8138.
Huang Z, Long H, Wei YM, Qi PF, Yan ZH, Zheng YL (2010). Characterization and classifi cation of γ -gliadin multigene sequences from Aegilops section Sitopsis. Cereal Res Commun 38: 1-14.
Jaaska V (1978) NADP-dependent aromatic alcohol dehydrogenase in polyploid wheats and their diploid relatives: on the origin and phylogeny of polyploid wheats. Th eor Appl Genet 53: 209- 217.
Jaccard P (1908) Nouvelles researchsur la distribution fl orale. Bull Soc Vaud Sci Nat 44: 233-270.
Jiang JM, Gill BS (1994) New 18S-center-dot-26S ribosomal-RNA gene loci - chromosomal landmarks for the evolution of polyploid wheats. Chromosoma 103: 179-185.
Johnson BL (1972) Protein electrophoresis profi les and the origin of the B-genome of wheat. P Nat Acad Sci USA 69: 1398-1402.
Johnson BL, Dhaliwal HS (1976) Reproductive isolation of Triticum boeoticum and Triticum urartu and the origin of tetraploid wheats. Am J Bot 63: 1088-1094.
Johnson BL, Dhaliwal HS (1978) Triticum urartu and genome evolution in the tetraploid wheats. Am J Bot 65: 907-918.
Joppa LR (1993) Genome relationship of Triticum searsii and wheat. Agron Abstracts, American Society of Agronomy, Madison, WI, USA.
Kawahara T, Yamane K, Imai T (2008). Phylogenetic relationships among Aegilops-Triticum species based on sequence data of chloroplast DNA. Available at: http://ses.library.usyd.edu.au/ bitstream/2123/3332/1/P076.pdf.
Kerby K, Kuspira J (1988) Logical evidence bearing on the origin of the B-genome in polyploid wheats. Genome 30: 36-43.
Kihara H (1944) Discovery of the DD-analyser, one of the ancestors of Triticum vulgare. Agr Hort 19: 13-14.
Kihara H (1954) Consideration on the evolution and distribution of Aegilops species based on the analyser-method. Cytologia 19: 336-357.
Kilian B, Ozkan H, Deusch O, Eff gen S, Brandolini A, Kohl J, Martin KW, Salamini F (2007) Independent wheat B and G genome origins in outcrossing Aegilops progenitor haplotypes. Mol Biol Evol 24: 217-227.
Kucuk O, Gulbıttı-Onarıcı S, Sumer S (2006) RFLP of analyses of an intergenic spacer region of chloroplast DNA in some wild wheat species. Afr J Biotechnol 5: 2058-2061.
Lamoureux D, Peterson DG, Li W, Fellers JP, Gill BS (2005) Th e effi cacy of Cot-based gene enrichment in wheat (Triticum aestivum L.). Genome 48: 1120-1126.
Langridge P, Lagudah ES, Holton TA, Appels R, Sharp PJ, Chalmers KJ (2001) Trends in genetic and genome analyses in wheat: a review. Aust J Agric Res 52: 1043-1077.
Lev-Yadun S, Gopher A, Abbo S (2000) Th e cradle of agriculture. Science 288: 1602-1603.
Liu B, Segal G, Rong JK, Feldman M (2003) A chromosome-specifi c sequence common to the B genome of polyploid wheat and Aegilops searsii. Plant Syst Evol 241: 55-66.
Liu K, Muse SV (2005) PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21: 2128-2129.
Maestra B, Naranjo T (1998) Homoeologous relationships of Aegilops speltoides chromosomes to bread wheat. Th eor Appl Genet 97: 181-186.
Montebove L, Depace C, Jan CC, Mugnozza GTS, Qualset CO (1987) Chromosomal location of isozyme and seed storage protein genes in Dasypyrum-villosum (L.) Candargy. Th eor Appl Genet 73: 836-845.
Natarajan AT, Sarma NP (1974) Chromosome banding patterns and the origin of the B genome in wheat. Genet Res 24: 103-108.
Nishikawa K, Furuta Y, Yamada T, Kudo S (1992) Genetic studies of α-amylase isozymes in wheat, VII. Variation in diploid ancestral species and phylogeny of tetraploid wheat. Th eor Appl Genet 67: 1-15.
Ogihara Y, Tsunewaki K (1982) Molecular-basis of the genetic diversity of the cytoplasm in Triticum and Aegilops. 1. Diversity of the chloroplast genome and its lineage revealed by the restriction pattern of ct-DNAs. Jpn J Genet 57: 371-396.
Ogihara Y, Tsunewaki K (1988) Diversity and evolution of chloroplast DNA in Triticum and Aegilops as revealed by restriction fragment analysis. Th eor Appl Genet 76: 321-332.
Pegington C, Rees H (1970) Chromosome weight and measures in the Triticinae. Heredity 25: 195-205.
Petersen G, Seberg O, Yde M, Berthelsen K (2006) Phylogenetic relationships of Triticum and Aegilops and evidence for the origin of the A, B, and D genomes of common wheat (Triticum aestivum). Mol Phylogenet Evol 39: 70-82.
Provan J, Wolters P, Caldwell KH, Powell W (2004) High-resolution organellar genome analysis of Triticum and Aegilops sheds new light on cytoplasm evolution in wheat. Th eor Appl Genet 108: 1182-90.
Riley R, Unrau J, Chapman V (1958) Evidence on the origin of the B genome of wheat. J Hered 49: 91-98.
Salamini F, Özkan H, Brandolini A, Schäfer-Pregl R, Martin W (2002) Genetics and geography of wild cereal domestication in the Near East. Nat Genet Rev 3: 429-441.
Salina EA, Lim KY, Badaeva ED, Shcherban AB, Adonina IG, Amosova AV, Samatadze TE, Vatolina TY, Zoshchuk SA, Leitch AR (2006) Phylogenetic reconstruction of Aegilops section Sitopsis and the evolution of tandem repeats in the diploids and derived wheat polyploids. Genome 49: 1023-1035.
Sarkar P, Stebbins GL (1956) Morphological evidence concerning the B genome in wheat. Am J Bot 43: 297-304.
Sasanuma T, Miyashita NT, Tsunewaki K (1996) Wheat phylogeny determined by RFLP analysis of nuclear DNA . 3. Intra- and interspecifi c variations of fi ve Aegilops Sitopsis species. Th eor Appl Genet 92: 928-934.
Shu G, Muthukrishnan S, Liang GH, Paulsen GM (1993) Restriction fragment patterns of chloroplast and mitochondrial-DNA of Dasypyrum-villosum (L.) Candargy and wheats. Th eor Appl Genet 87: 44-48.
Sneath PHA, Sokal RR (1973) Numerical taxonomy. WH Freeman, San Francisco, CA, USA.
Sourdille P, Tavaud M, Charmet G, Bernard M (2001) Transferability of wheat microsatellites to diploid Triticeae species carrying the A, B and D genomes. Th eor Appl Genet 103: 346-352.
Taberlet P, Gielly L, Pautou G, Bouvet J (1991) Universal primers for amplifi cation of three non-coding regions of chloroplast DNA. Plant Mol Biol 17: 1105-1109.
Talbert LE, Blake NK, Storlie EW, Lavin M (1995) Variability in wheat based on low-copy DNA sequence comparisons. Genome 38: 951-957.
Talbert LE, Magyar GM, Lavin M, Blake TK, Moylan SL (1991) Molecular evidence for the origin of the S-derived genomes of polyploid Triticum species. Am J Bot 78: 340-349.
Tanaka M (1955) Chromosome pairing in hybrids between Aegilops sharonensis and some species of Aegilops and Triticum. Wheat Inform Serv 2: 7-8.
Terachi T, Ogihara Y, Tsunewaki K (1988) Proc 7th Int Wheat Genet Symp 1: 789-795.
Terachi T, Ogihara, Y, Tsunewaki K (1990) Th e molecular-basis of genetic diversity among cytoplasms of Triticum and Aegilops. 7. Restriction endonuclease analysis of mitochondrial DNAs from polyploid wheats and their ancestral species. Th
Tsunewaki K (1991) A historical review of cytoplasmic studies in wheat. In: Nuclear and Organelle Genomes of Wheat Species (Eds. T Sasakuma, T Kinoshita). Kihara Memorial Foundation, Yokohama, Japan, pp. 16-28.
Ünlü S, Sümer S (2005) PCR-based RFLP analysis of an intergenic spacer region in cpDNA of some wild wheat species. Bot J Linn Soc 148: 305-310.
Vedel F, Quetier F, Dosba F (1978) Study of wheat phylogeny by EcoRI analysis of chloroplastic and mitochondrial DNAs. Plant Sci Lett 13: 97-102.
von Buren M (2001) Polymorphisms in two homeologous gamma- gliadin genes and the evolution of cultivated wheat. Genet Res Crop Evol 48: 205-220.
Wang GZ, Matsuoka Y, Tsunewaki K (2000) Evolutionary features of chondriome divergence in Triticum (wheat) and Aegilops shown by RFLP analysis of mitochondrial DNAs. Th eor Appl Genet 100: 221-231.
Wang GZ, Miyashita NT, Tsunewaki K (1997) Plasmon analyses of Triticum (wheat) and Aegilops: PCR single-strand conformational polymorphism (PCR-SSCP) analyses of organellar DNAs. P Nat Acad Sci USA 94: 14570-14577.
Witcombe JR (1983) A Guide to the Species of Aegilops L. IBPGR Secretariat, Rome.
Yamane K, Kawahara T (2005) Intra- and interspecifi c phylogenetic relationships among diploid Triticum-Aegilops species (Poaceae) based on base-pair substitutions, indels, and microsatellites in chloroplast noncoding sequences. Am J Bot 92: 1887-1898.
Yao X, Ye Q, Fritsch PW, Cruz BC, Huang H (2008) Phylogeny of Sinojackia (Styracaceae) based on DNA sequence and microsatellite data: Implications for taxonomy and conservation. Ann Bot 101: 651-659.
Zhang L, Liu D, Lan X, Zheng Y, Yan Z (2008) A synthetic wheat with 56 chromosomes derived from Triticum turgidum and Aegilops tauschii. J Appl Genet 49: 41-44.
Zhang W, Qu LJ, Gu H, Gao W, Liu M, Chen J, Chen Z (2002) Studies on the origin and evolution of tetraploid wheats based on the internal transcribed spacer (ITS) sequences of nuclear ribosomal DNA. Th eor Appl Genet 104: 1099-1106.
Zohary D, Hopf M (1988) Domestication of Plants in the Old World. Clarendon Press, Oxford, UK.
Zohary D, Hopf M (2000) Domestication of Plants in the Old World:
e Origin and Spread of Cultivated Plants in West Asia,
Europe and the Nile Valley, 3rd ed. Oxford University Press, Oxford, UK.