Phylogenetic Analysis of Striped Hyaena (Hyaena hyaena: Hyaenidae, Carnivora) in Hatay Province in Turkey

Striped hyaena (Hyaena hyaena) is one of the species in danger of extinction and categorized globally as “Under Threatened Organism”. From time to time, different tissue samples and carcasses of the striped hyena are reported in different regions of Anatolia. In this study, 571 bp length of Cytochrome C Oxidase Subunit II (COX 2) of mitochondiral DNA from hair, ears, nails and teeth specimens from six striped hyaenas were amplified and sequenced to determined phylogenetic relationships between close and distant species related to hyaena. Tissue samples using in this study were found randomly at different times in Hatay province, Turkey. According to our results, all colected samples located in Hatay region are the members of H. hyaena species. Moreover, this research is the first molecular research using COX2 gene region for phylogenetic analysis in Turkey. Further investigation can be performed on studies that suggest determining phylogenetic status of striped hyaenas.

Hatay İlinde Çizgili Sırtlanın (Hyaena hyaena: Hyaenidae, Carnivora) Filogenetik Analizi

Çizgili Sırtlan (Hyaena hyaena), küresel olarak "Tehdit Altındaki Canlılar" olarak sınıflandırılan ve nesli tükenme tehlikesiyle karşı karşıya olan türlerden biridir. Anadolu'nun farklı bölgelerinde farklı zamanlarda çizgili sırtlanın doku örnekleri ve leşleri rapor edilmiştir. Bu çalışmada, sırtlan ile ilgili yakın ve uzak türler arasındaki filogenetik ilişkileri belirlemek için, ölü sırtlanlardan alınan saç, kulak, tırnak ve diş örneklerinden 571 bp uzunluğundaki Cytochrome C Oxidase Subunit II (COX 2) mitokondiral DNA'sı amplifiye edilmiş ve dizilenmiştir. Bu çalışmada kullanılan doku örnekleri Hatay ilinde farklı zamanlarda rastgele bulunmuştur. Elde ettiğimiz sonuçlara göre Hatay bölgesinde toplanan örneklerin tamamı Hyaena hyaena türünün üyeleridir. Ayrıca bu araştırma, Türkiye'de filogenetik analiz için COX2 gen bölgesini kullanan ilk moleküler araştırmadır. Çizgili sırtlanların filogenetik durumunun belirlenmesini öneren çalışmalar üzerinde daha fazla araştırma yapılabilir.

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Abi-Said M, Dloniak, SMD. 2015. Hyaena hyaena. The IUCN Red List of Threatened Species 2015: e.T10274A45195080.

Akay A, Inac S, Yildirim IC 2011. Monitoring the local distribution of striped hyaenas (Hyaena hyaena L.) in the Eastern Mediterranean Region of Turkey (Hatay) by using GIS and remote sensing technologies. Environmental monitoring and assessment, 181: 445-455. DOI: 10.1007/s10661-010-1840-6.

Alam MS, Khan JA, Pathak BJ. 2015. Striped hyaena (Hyaena hyaena) status and factors affecting its distribution in the Gir National Park and Sanctuary, India. Folia Zoologica, 64: 32- 40. DOI: 10.25225/fozo.v64.i1.a4.2015.

Atay E, Kasapoğlu A, Çetin İT. 2017. Status of Striped Hyaena (Hyaena hyaena) in Hatay and Şanlıurfa-Turkey. Turkish Journal of Agriculture-Food Science and Technology, 5: 1165- 1172. DOI: 10.24925/turjaf.v5i10.1165-1172.1295.

Avise JC. 1994. Molecular markers, natural history and evolution. NY: Chapman and Hall. pp. 511.

Avise JC. 2000. Stability, equilibrium and molecular aspects of conservation in marine species. Marine Genetics, xi-xii. Bandelt HJ, Forster P, Röhl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Molecular biology and evolution, 16: 37-48.

Bernor RL, Fahlbusch V, Mittmann HW. 1996. The evolution of western Eurasian Neogene mammal faunas. Columbia University Press. ISBN: 0231082460, 9780231082464.

Bilgin R. 2011. Back to the suture: the distribution of intraspecific genetic diversity in and around Anatolia. International Journal of Molecular Sciences, 12: 4080-4103. DOI: 10.3390/ijms12064080.

Bon C, Berthonaud V, Maksud F, Labadie K, Poulain J, Artiguenave F, Elalouf JM. 2012. Coprolites as a source of information on the genome and diet of the cave hyaena. Proceedings of the Royal Society B: Biological Sciences, 279: 2825-2830. DOI: 10.1098/rspb.2012.0358.

Brown JH Lomolino MV. 1998. Biogeography. 2nd Ed. Sunderland, Massachusetts (Sinauer Associates, Inc. Publishers).

Johnson K. 2002. The status of mammalian carnivores in Turkey. Endangered Species Update, 19: 232-239.

Kasparek M, Kasparek A, Gözcelioğlu B, Çolak E, Yiğit N. 2004. On the status and distribution of the Striped Hyaena, Hyaena hyaena, in Turkey. Zoology in the Middle East, 33: 93-108. DOI: 10.1080/09397140.2004.10638068.

Koepfli KP, Jenks SM, Eizirik E, Zahirpour T, Van Valkenburgh B, Wayne RK. 2006. Molecular systematics of the Hyaenidae: relationships of a relictual lineage resolved by a molecular supermatrix. Molecular Phylogenetics and Evolution, 38: 603-620. DOI: 10.1016/j.ympev.2005.10.017.

Kruuk H. 1976. Feeding and social behaviour of the striped hyaena (Hyaena vulgaris desmarest). African Journal of Ecology, 14: 91-111.

Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular biology and evolution, 33: 1870-1874. DOI: 10.1093/molbev/msw054.

Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25: 1451-1452. DOI: 10.1093/bioinformatics/btp187.

Mills MGL Hofer H. 1998. Status survey and conservation action plan. Hyaenas. IUCN/SSC Hyaena Specialist Group, IUCN, Switzerland. ISBN: 2-8317-0442-1

Moritz C. 1994. Applications of mitochondrial DNA analysis in conservation: a critical review. Molecular Ecology, 3: 401- 411. DOI: 10.1111/j.1365-294X.1994.tb00080.x.

Paijmans JL, Fickel J, Courtiol A, Hofreiter M, Förster DW. 2016. Impact of enrichment conditions on cross‐species capture of fresh and degraded DNA. Molecular Ecology Resources, 16: 42-55. DOI: 10.1111/1755-0998.12420.

Palacio P, Berthonaud V, Guérin C, Lambourdière J, Maksud F, Philippe M, Elalouf JM. 2017. Genome data on the extinct Bison schoetensacki establish it as a sister species of the extant European bison (Bison bonasus). BMC Evolutionary Biology, 17: 48.

Prater SH. 1971. The book of Indian animals. Bombay Natural History Society, Oxford University Press, Bombay. ISBN: 9780195621693, 9780195621693

Presa P, Pérez M, Diz AP. 2002. Polymorphic microsatellite markers for blue mussels (Mytilus spp.). Conservation Genetics, 3: 441-443.

Rohland N, Pollack JL, Nagel D, Beauval C, Airvaux J, Pääbo S, Hofreiter M. 2005. The population history of extant and extinct hyaenas. Molecular Biology and Evolution, 22: 2435- 2443. DOI: 10.1093/molbev/msi244.

chramme E. 2015. Social structure of spotted hyaena (Crocuta crocuta) populations around Mekelle city in Tigrey, Ethiopia (Doctoral dissertation, Universiteit Antwerpen). Simpson GG. 1953. The major features of evolution (No. 575 S55). ISBN: 0671231030, 978- 0671231033

Şekercioğlu ÇH, Anderson S, Akçay E, Bilgin R, Can ÖE, Semiz G, Sağlam İK. 2011. Turkey’s globally important biodiversity in crisis. Biological Conservation, 144: 2752-2769. DOI: 10.1016/j.biocon.2011.06.025.

Wagner AP. 2007. Hyaena hyaena. In The Mammals of Africa. (Amsterdam: Academic Press).

Watts HE, Holekamp KE. 2007. Hyaena societies. Current Biology, 17: R657-R660.

Werdelin L, Solounias N. 1991. The Hyaenidae: taxonomy, systematics and evolution. Fossils and Strata, 30: 1-104.

Westbury MV, De Cahsan B, Dalerum F, Norén K, Hofreiter M. 2019. Aardwolf population diversity and phylogenetic positioning inferred using complete mitochondrial genomes. African Journal of Wildlife Research, 49: 27-33. DOI: 10.3957/056.049.0027.

Westbury MV, Hartmann S, Barlow A, Wiesel I, Leo V, Welch R, Hofreiter M. 2018. Extended and continuous decline in effective population size results in low genomic diversity in the world’s rarest hyaena species, the brown hyaena. Molecular biology and evolution, 35: 1225-1237. DOI: 10.1093/molbev/msy037.

Yu JN, Kim S, Oh K, Kwak M. 2012. Complete mitochondiral genome of the Korean red fox Vulpes vulpes (Carnivora, Canidae). Mitochondrial DNA, 23: 118-119. DOI: 10.3109/19401736.2011.653800.

Zhang DX, Hewitt GM. 1997. Insect mitochondrial control region: a review of its structure, evolution and usefulness in evolutionary studies. Biochemical Systematics and Ecology, 25: 99-120.
Türk Tarım - Gıda Bilim ve Teknoloji dergisi-Cover
  • ISSN: 2148-127X
  • Yayın Aralığı: Aylık
  • Başlangıç: 2013
  • Yayıncı: Turkish Science and Technology Publishing (TURSTEP)
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