A Novel Technique for The Recovery, Isolation and Preliminary Evaluation of Rhizoctonia solani Mycoparasites from Soil

A Novel Technique for The Recovery, Isolation and Preliminary Evaluation of Rhizoctonia solani Mycoparasites from Soil

This paper describes a novel technique that allows detecting and isolating of R. solani mycoparasites subsist in soil incorporating the precolonized agar method and a modified nutrient medium supplemented with tolclophos-methyl. A great number of potential biocontrol agents like Trichoderma and Gliocladium could be isolated into pure culture. Most of the isolates examined macroscopically and microscopically in dual cultures had been recognized as mycoparasites. By using this novel technique, various mycoparasitic isolates were obtained from soil. The majority of the isolates were in the genera of Trichoderma and Gliocladium. Fourteen Trichoderma species, Gliocladium roseum Bainier, Chaetomium sp., Geotrichum sp., Paecilomyces sp., Papulospora sp. and a Spicaria sp. were determined as having mycoparasitic activity against R. solani as well. Some of them possessed both parasitic action and antifungal antibiotic activity. This novel technique proved to be useful and showed promise for studies of the ecology of biocontrol agents added to soil or seed.

___

  • Abo-Elyousr, K.A.M., Abdel-Hafez, S.I.I. and Abdel-Rahim. I.R. 2014. Isolation of Trichoderma and evaluation of their antagonistic potential against Alternaria porri. Journal Phytopathology 162: 567–574
  • Adams, P.B. 1990. The Potential of Mycoparasites for Biological Control of Plant Diseases. Annual Review Phytopathology 28: 59-72.
  • Ali-Shtayeh, M.S. and Saleh, A.S.F. 1999. Isolation of Pythium acanthicum, P. oligandrum, and P. periplocum from soil and evaluation of their mycoparasitic activity and biocontrol efficacy against selected phytopathogenic Pythium species. Mycopathologia 145: 143–153.
  • Almeida, F., Cerqueira, F., Silva, R., Ulhoa, C. and Lima A. 2007. Mycoparasitism studies of Trichoderma harzianum strains against Rhizoctonia solani: evaluation of coiling and hydrolytic enzyme production. Biotechnology Letter 29: 1189–1193.
  • Amin, F., Razdan, V.K., Mohiddin, F.A., Bhat, K.A. and Banday, S. 2010. Potential of Trichoderma species as biocontrol agents of soil borne fungal propagules. Journal of Phytology 2: 38–41.
  • Anees, M, Tronsmo, A., Edel-Hermann, V., Hjeljord, L.G., Heraud, C., and Steinberg, C. 2010. Characterization of field isolates of Trichoderma antagonistic against Rhizoctonia solani. Fungal Biology 114: 691-701.
  • Asad, S.A., Ali, N., Hameed, A., Khan, S.A., Ahmad, R., Bilal, M., Shahzad, M. and Tabassum, A. 2014. Biocontrol efficacy of different isolates of Trichoderma against soil borne pathogen Rhizoctonia solani. Polish Journal of Microbiology 63: 95–103.
  • Aydın, M.H., Turhan, G. 2009. Rhizoctonia solani’nin Fungal Antagonistlerinin Belirlenmesi Üzerinde Araştırmalar. “Studies on determination of fungal antagonists of Rhizoctonia solani”. Anadolu Journal of AARI 19: 49-72.
  • Aydın, M.H., Turhan, G. 2013. Patateste Rhizoctonia solani’ ye Karşı Trichoderma Türlerinin Etkinliği ve Bazı Fungisitlerle Birlikte Kullanılması. “The efficacy of Trichoderma species against Rhizoctonia solani on potato and their Integration with some fungicides”. Anadolu Journal of AARI 23: 12-30.
  • Bailey, B., Bae, H., Strem, M.D., Crozier, J., Thomas, S.E., Samuels, G.J., Vinyard, B.T. and Holmes, K.A. 2008. Antibiosis, mycoparasitism, and colonization success for endophytic Trichoderma isolates with biological control potential in Theobroma cacao. Biological Control 46: 24–35.
  • Banville, J.B., Carling, E.C. and Otrysko, B.E.1996. Rhizoctonia Diseases on Potato. pp. 321-330, in Rhizoctonia Species: Taxonomy, Molecular biology, Ecology, Pathology and Disease Control, Edited by. B. Sneh., S. Jabaji-Hare., S. Neate and G. Dijst. Kluwer Academic Publishers, London.
  • Barnett, I.I.L., Binder, F.L.1973. The fungal host-parasite relationship. Annual Review Phytopathology 11: 273-292 Benítez, T., Rincόn, A.M., Limόn, M.C., Codόn, A.C. 2004. Biocontrol mechanisms of Trichoderma strains. International Microbiology 7: 249–260.
  • Brotman, Y., Kapuganti, J.G., Viterbo, A. 2010. Trichoderma. Current Biology 20, R390-R391.
  • Burgess, D.R., Hepworth, G. 1996. Biocontrol of sclerotinia stem rot (Sclerotinia minor) in sunflower by seed treatment with Gliocladium virens. Plant Pathology 45: 583-592.
  • Boosalis, M.G. and Scharen, A.L 1959. Methods for microscopic detection of Aphaanomyces euteiches and Rhizoctonia solani and for isolation of Rhizoctonia solani associated with plant debris. Phytopathology, 49: 192-198.
  • Chandler, D., Hay, D., Reid, A.P. 1997. Sampling and occurrence of entomopathogenic fungi and nematodes in UK soils. Appled Soil Ecology. 5: 133–141.
  • Chaverri, P., Branco-Rocha, F., Jaklitsch, W., Gazis, R., Degenkolb, T., Samuels, G.J.2015. Systematics of the Trichoderma harzianum species complex and the re-identification of commercial biocontrol strains. Mycologia, 107: 558–590.
  • Chet, I., Harman, G.E., Baker, R. 1981. Trichoderma hamatum: Its hyphal interactions with Rhizoctonia solani and Pythium spp. Microbiological Ecology 7: 29-38.
  • Chet, I. 1987. Trichoderma: Application, Mode of Action and Potential as a Bio Control Agent of Soil Borne Plant Pathogenic Fungi. In: Chet, I. (Ed.), Innovative Approaches to Plant Disease Control. Wiley, New York, pp. 137-160.
  • Chet, I., Baker, R. 1981. Isolation and biocontrol potential of Trichoderma hamatum from soil naturally suppressive to Rhizoctonia solani. Phytopathology 71: 286-290.
  • Coley-Smith, J.R., Ridout, C.T., Mitchell, C.M., Lynch, J.M. 1991. Control of bottom rot disease of lettuce (Rhizoctonia solani) using preparations of Trichoderma viride, T. harzianum or tolclofos-methyl. Plant Pathology. 40: 359-366.
  • Crauss, U., Bidwell, R., Ince, J. 1998. Isolation and Preliminary Evaluation of Mycoparasites as Biocontrol Agents of Crown Rot of Banana. Biological. Control 13: 111–119.
  • Cuevas, V.C., Soriano, J.M., Bagunu, L.G., Soniega, J.A., Alfonso, A.L.1995. Control of damping-off diseases of vegetables by Trichoderma species. Philippine Agriculturist 78, 255-276.
  • Çeliker, N.M. and Nemli, T. 1994. Investigation on biocontrol of white root rot [Rosellinia necatrix (Hartig) Berlese]. Türkiye III. Biyolojik Mücadele Kongresi 25-28 Ocak.
  • Deacon, J.W. and Berr, A. 1992. Modes of action of mycoparasites in relation to biocontrol of soilborne plant pathogens. In: Tjamos, E.C. and Cook, R.J., (Ed.), Biological control of plant diseases. Plenum Press, New York, N.Y, pp. 157-165.
  • Deacon, J.W., Henry, C.M. 1978. Mycoparasitism by Pythium oligandrum and P. acanthicum. Soil Biology and Biochemistry 10: 409-415.
  • Dennis, C., Webster, J. 1971. Antagonistic properties of species-groups of Trichoderma: III. Hyphal interaction. Transactions the British. Mycological. Society 57: 363−369.
  • Deshmukh, S.K., Verekar, S.A. 2014. Isolation of keratinophilic fungi from selected soils of Sanjay Gandhi National Park, Mumbai (India). Journal Medical Mycology 24: 319-327.
  • Elad, Y., Barak, R., Chet, I. and Heris, Y. 1983. Ultrastructural studies of the interaction between Trichoderma spp. and plant pathogenic fungi, Phytopathology 107: 168-175.
  • Elad, Y., Chet, I. and Katan, J. 1980. Tricoderma harzianum a biocontrol agent effective against Sclerotium rolfsii and Rhizoctonia solani. Phytopathology 70: 119-121.
  • Foley, M.F. and Deacon, J.W. 1985. Isolation of Pythium oligandrum and other necrotrophic mycoparasities from soil. Transactions British Mycological Society 85: 631-639.
  • Goble, T.A., Dames, J.F., Hill, M.P., Moore, S.D. 2010. The effects of farming system, habitat type and bait type on the isolation of entomopathogenic fungi from citrus soils in the Eastern Cape Province, South Africa. Biocontrol 55: 399-412.
  • Goble, T.A., Costet, L., Robene, I., Nibouche, S., Rutherford, R.S., Conlong, D.E., Hill, M.P. 2012. Beauveria brongniartii on white grubs attacking sugarcane in South Africa. Journal of Invertebrate Pathology, 111: 225–236.
  • Hameed, F.R. 2008. Effect of Rizolex on Rhizoctonia solani Kühn isolates and biocontrol fungus Trichoderma harzianum Rifai in vitro. Journal of Kerbala University 4: 218-223.
  • Harman, G.E. 2006. Overview of mechanisms and uses of Trichoderma spp. Phytopathology 96: 190–194.
  • Harman, G.E., Howell, C.R., Viterbo, A., Chet, I., Lorito, M. 2004. Trichoderma species: opportunistic, avirulent plant symbionts. Nature Reviews Microbiology 2: 43–56.
  • Hermosa, R., Viterbo, A., Chet, I., Monte, E. 2012. Plant beneficial effects of Trichoderma and its genes. Microbiology, 158: 17–25.
  • Hernández-Domínguez, C., María de Lourdes C.B, M.L., Alvarado-Aragón, L.U., Hernández-López, G., Guzmán- Franc, A.W. 2016. Comparison of the relative efficacy of an insect baiting method and selective media for diversity studies of Metarhizium species in the soil. Biocontrol Science Technology 26: 707–717.
  • Hjeljord, L., Tronsmo, A. 1998. Trichoderma and Gliocladium in biological control: an overview: In: Harman, G.E., Kubicek, C.P. (Eds.) Trichoderma and Gliocladium: Enzymes, Biological control and Commercial Applications. Taylor and Francis Ltd., London, pp. 131-151. Hopkins, D.W., Macnaughton, S.J., O' Donnell, A.G. l991. A dispersion and differential centrifugation technique for representatively sampling microorganisms from soil. Soil BioIogy Biochemistry 23: 217-225.
  • Howell, C.R. 2003. Mechanisms employed by Trichoderma species in the biological control of plant diseases: The history and evolution of current concepts. Plant Diseases 87: 4–10.
  • Howell, C.R. 2006. Understanding the mechanisms employed by Trichoderma virens to effect biological control of cotton diseases. Phytopathology 96: 178–180.
  • Hyakumachi, M. 2013. Research on biological control of plant diseases: present state and perspectives. J. Gen. Plant Pathology 79: 435–440.
  • Isnaini, M., Burgess, D.R., Keane, P.J. 1998. The use of cultures of Sclerotinia minor for selective isolation and enumeration of mycoparasitic isolates of Trichoderma from soil and roots. Australasian Plant Pathology. 27: 244-250.
  • İren, S., Maden, S., Katırcıoğlu, Z., Erzurum, K. 1988. Trichoderma species determined in Turkey. Journal of Turkish Phytopathology 17: 107.
  • Kachuei, R., Emami, M., Naeimi, B., Diba, K. 2012. Isolation of keratinophilic fungi from soil in Isfahan province, Iranian Journal of Medical Microbiology 22: 8-13.
  • Karaca, G., Tepedelen, G., Belghouthi, A., Paul, B. 2008. A new mycoparasite, Pythium lycopersicum, isolated in Isparta, Turkey: Morphology, molecular characteristics and its antagonism with phytopathogenic fungi. FEMS Microbiology. Letters 288, 163–170.
  • Knudsen, I.M.B., Hockenhull, J., Funck, J.D., Gerhardson, B., Hökeber, M., Tahvonen, R., Teperi, E., Sundheim, L., Henriksen, B. 1997. Selection of biological control agents for controlling soil and seed-borne diseases in the field. European Journal of. Plant Pathology 103: 775–784.
  • Kredics, L., Antal, Z., Manczinger, L., Szekeres, A., Kevei, F., Nagy, E. 2003. Trichoderma strains with biocontrol potential, Food Technology Biotechnology 41: 37-42.
  • Kumar, K., Amaresan, N., Bhagat, S., Madhuri, K., Srivastava, R.C. 2012. Isolation and Characterization of Trichoderma spp. for Antagonistic Activity Against Root Rot and Foliar Pathogens. Indian Journal of. Microbiology 52: 137–144.
  • Lodha, B.C., Webster, J. 1990. Pythium acanthophoron, a mycoparasite, rediscovered in India and Britain. Mycology Research. 94: 1006–1008.
  • Lumsden, R.D. 1981. Hyperparasitism for control of plant pathogens. In: Pimentel, D. (Ed.), CRC Handbook of Pest Management in Agriculture, Vol. 1, CRC Press, Boca Raton, Florida. pp. 475-484.
  • Lumsden, R.D., Lewis, J.A., Ravel, D.R. 1995. Formulation and delivery of biocontrol agents for use against soilborne plant pathogens. In: Hall, F.R., Bary, J.W. (Eds.), Biorational Pest Control Agents, Formulation and Delivery, ACS Symposium Series 595, Washington, pp. 166-182.
  • Malek, E., Moosazadeh, M., Hanafi, P., Nejat, Z.A., Amini, A., Mohammadi, R., Kohsar, F., Niknejad, F. 2013. Isolation of Keratinophilic Fungi and Aerobic Actinomycetes From Park Soils in Gorgan, North of Iran, Jundishapur Journal of Microbiology 6 :10, e11250.
  • Melo, I.S., Faull, J.L., Graeme-Cook, K.A. 1996. Trichoderma koningii and Trichoderma harzianum as destructive mycoparasites of Sclerotinia sclerotiorum. In: International Congress of Mycology Division, 8, Proceedings. Jerusalém, 1996, p.183.
  • Meyling, N. 2007. Methods for isolating entomopathogenic fungi from the soil environment. Laboratory Manual 2007, Department of Ecology, Faculty of Life Sciences, University of Copenhagen, Denmark.
  • Molan, Y.Y. 2009. Detection of Presumptive Mycoparasites in Soil Placed on Host-Colonized Agar Plates in Riyadh Region, Saudi Arabia. Asian Journal of Plant Pathology 3, 22-26.
  • Mukherjee, A.K., Kumar, A.S., Kranthi, S., Mukherjee, P.K. 2014. Biocontrol potential of three novel Trichoderma strains: isolation, evaluation and formulation. 3 Biotechnique. 4, 274-281.
  • Mullingan, D.F.C., Deacon, J.W. 1992. Detection of presumptive mycoparasites in soil placed on host-colonized agar plates. Mycology Research 96, 605-608.
  • Mulligan, D.F.C., Jones, E.E., Deacon, J.W. 1995. Monitoring and manipulation of populations of Pythium oligandrum, Pythium mycoparaticum and a Papulaspora species in soil. Soil Biology Biochemistry 27, 1333–1343.
  • Naher, L., Yusuf, U.K., Ismail, A. and Hossain, K. 2014. Trichoderma spp.: A Biocontrol Agent for Sustainable Management of Plant Diseases. Pakistan Journal of Botany 46, 1489-1493.
  • Pal, K. K. and Gardener, B.M.S. 2006. Biological Control of Plant Pathogens. The Plant Health Instructor DOI: 10. 1094/PHI-A-2006-1117-02.
  • Papavizas, G.C. 1985. Trichoderma and Gliocladium: biology, ecology, and potential for biocontrol. Annual Review Phytopathology 23, 23–54.
  • Ribeiro, W.R.C. and Butler, E.E. 1992. Isolation of mycoparasitic species of Pythium with spiny oogonia from soil in California. Mycology Research 96, 857–862.
  • Rinu, K., Sati, P., Pandey, A. 2014. Trichoderma gamsii (NFCCI 2177): A newly isolated endophytic, psychrotolerant, plant growth promoting, and antagonistic fungal strain. Journal of Basic Microbiology 54, 408–417.
  • Roberts, P.D., Urs, R.R., French-Monar, R.D., Hoffine, M.S., Seijo, T.E., Mcgovern, R.J. 2005. Survival and recovery of Phytophthora capsici and oomycetes in tailwater and soil from vegetable fields in Florida. Annals of Applied Biology 146, 351–359.
  • Samuels, G.J. 2006. Trichoderma: Systematics, the sexual state, and ecology. Phytopathology 96, 195-206.
  • Turhan, G. 1973. Fungi isolated from the roots of diseased vegetable seedlings. Journal of Turkish Phytopathology 2, 100-112. van den Boogert, P.H.J.F. and Gams, W. 1988. Assessment of Verticillium biguttatum in agricultural soils. Soil Biology and Biochemistry. 20, 899-905.
  • van den Boogert, P.H.J.F., Jager, G. and Velvis, H. 1990. Verticillium biguttatum, an important mycoparasite for the control of Rhizoctonia solani in potato. In: Hornby, D. (Ed.), Biological Control of Soil-borne Plant Pathogens. CAB International, Wallingford. pp. 77-91.
  • Vargas Gil, S., Pastor, S., March, G.J. 2009. Quantitative isolation of biocontrol agents Trichoderma spp., Gliocladium spp. and actinomycetes from soil with culture media. Microbiology Research 164, 196–205. Verma, M., Brar, S., Tyagi, R., Surampalli, R. and Valero, J. 2007. Antagonistic fungi, Trichoderma spp.: panoply of biological control. Biochemical Engineering Journal 37, 1–20
  • Vinale, F., Sivasithamparam, K., Ghisalberti, S., Lorito, M. 2008. Trichoderma–plant– pathogen interactions. Soil Biology and Biochemistry 40, 1–10.
  • Weindling, R. 1932. Trichoderma lignorum as a parasite of other soil fungi. Phytopathology 22, 837-45.
  • Wilson, M., Crawford, E.K., Campbell, R. 1992. Biological control by Trichoderma harzianum of damping-off of lettuce caused by Rhizoctonia solani. Bulletin EPPO 18, 83-89.
  • Woo, S.L., Lorito, M. 2007. Exploiting the Interactions Between Fungal Antagonists, Pathogens and the Plan For Biocontrol. In: Vurro, M., Gressel, J. (Eds.), Novel Biotechnologies for Biocontrol Agent Enhancement and Management, Springer, Dordrecht, NL., pp. 107–130.
  • Yobo, K. S., Laing, M. D., Hunter, C. H. 2010. Application of selected biological control agents in conjunction with tolclofos-methyl for the control of damping-off caused by Rhizoctonia solani. African Journal of Biotechnology 9, 1789-1796.