Polymorphism of 8 X-Chromosomal STR loci in Turkish population

In forensic sciences, X-chromosomal short tandem repeats (X-STRs), a complementary marker to the other genetic markers (autosomal, Y-chromosomal or mitochondrial), can be used in complex kinship analysis. Especially when a biological sample is not available from the putative father and samples from paternal relatives could be used instead. In this study eight X-chromosomal STR loci (DXS7132, DXS7423, DXS8378, DXS10074, DXS10101, DXS10134, DXS10135, HPRTB and Amelogenin) were investigated in population samples of 129 unrelated healthy Turkish volunteer [male (n=56), female (n=73)]. X-STRs were amplified in a multiplex PCR reaction with Mentype® Argus X-8 Kit. The separation and detection of PCR products were performed by capillary electrophoresis on a 310 Genetic Analyzer (Applied Biosystems). Statistical analysis was performed using POPgene v.1.32. and Arlequin v3.1 software’s. Data was compared with Turkish populations living in Europe (Germany and Denmark) and other populations (Japan, Ghana, Finland, Portugal and Germany). The high genetic distances were observed for the geographically distant populations while no significant differences found between in studied and tested Turkish populations. Results showed that eight STR loci on the X chromosome in Turkish population were found as highly polymorphic and useful for forensic applications.

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Filoğlu G, The importance of seven tetrameric STR locus in Criminal identification, Istanbul University Institute of Forensic Medicine, Department of Science, Doctorate Thesis. 1999.

Szibor R, X-chromosomal Markers: Past, Present and future. Forensic Sci. Int. Genet. 2007;93-9.

Szibor R, Krawczak M, Hering S, et al. Use of X linked markers for forensic purposes. Int J Legal Med. 2003;117:67-74.

Walsh PS, Metzger DA, Higuchi R. Chelex 100 as a medium for simple extraction of DNA for PCR-based typing form forensic material, Biotechniques. 1991;10:506-18.

Qiagen, QIAamp® DNA Mini and Blood Mini Handbook. 2016

Acar E, Filoglu G, Altuncul H, et al. Optimization and Validation Studies of The Mentype Argus X-Kit for Paternity Cases. Forensic Sci Int Genetics Supplement Series. 2009;2:47-8:

POPGENE VERSION 1.32 Microsoft Window-based Freeware for Population Genetic Analysis Quick User Guide. 2000.

Szibor R, Hering S, Edelmann J. A New Web Site Compiling Forensic Chromosome X Research is Now Online. Int. J. Legal Med. 2006;120:2524

Poetsch M, Wassenaar D, von Wurmb-Schwark N. Allele frequencies for 11 X chromosomal short tandem repeats in a population from Turkey. Int J Legal Med. 2013;127:913-4.

Poulsen L, Tomas C, Drobnič K, et al. NGMSElect™ and Investigator Argus X-12 analysis in population samples from Albania, Iraq, Lithuania, Slovenia, and Turkey. Forensic Sci Int Genet. 2016;22:110-2.

Edelmann J, Hering S, Michael M, et al. 16 X-chromosome STR Loci Frequency Data from a German Population. Forensic Sci. Int. 2001;124:215-8.

Ruivo D, Ribeiro T, Espinheira R, et al. Use of eight X-chromosomal STRs in paternity investigation. Forensic Sci. Int. Genetics Supplement Series. 2008;1:522-4.

Hedman M, Palo JU, Sajantila A. X-STR diversity patterns in the Finnish and the Somali population. Forensic Sci. Int. Genet. 2009;173-8.

Hashiyada M, Itakura Y, Funayama M. Polymorphism of Eight X-chromosomal STRs in a Japanese Population. Forensic Sci. Int. Genetics Supplement Series. 2008;54:3-6.

Thiele K, Löffler S, Löffler J, et al. Population Data of Eight X-chromosomal STR Markers in Ewe Individuals from Ghana. Forensic Sci. Int. Genetics Supplement Series. 2008;167-9.

Sufian A, Hosen MI, Fatema K, et al. Genetic diversity study on 12 X-STR loci of investigator® Argus X STR kit in Bangladeshi population. Int J Legal Med. 2017;131:963-5.

Guo F. Population genetic data for 12 X-STR loci in the Northern Han Chinese and StatsX package as tools for population statistics on X-STR. Forensic Sci. Int. Genet. 2017; e1-e8
Medicine Science-Cover
  • ISSN: 2147-0634
  • Yayın Aralığı: 4
  • Başlangıç: 2012
  • Yayıncı: Effect Publishing Agency ( EPA )
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