Comparative Analysis of Agronomic Traits and ISSR Method among Some Soybeans [Glycine Max (L.) Merr.] Genotypes

In this study, the genetic diversity was investigated among 12soybeans genotypes using inter simple sequence repeats (ISSR) andagronomic traits. DNA was isolated from the leaves of the genotypes.For molecular characterization, a total of 26 primers of ISSRs andeight agronomic characteristics were evaluated. ISSR analysisrevealed 88 polymorphic bands. The genetic diversity among thegenotypes according to ISSR analysis and agronomic traits wereestimated based on Nei homology and Euclidian distance,respectively, and dendrograms reflecting genetic similarity wereconstructed using UPGMA and NTSYSpc, respectively. Nei’shomology coefficient values used for ISSR analysis ranged from 78%-84%, and the average Euclidean distance used for agronomic dataranged from 1.96-9.77. Although soybean genotypes evaluated in thisstudy were highly similar, dendrograms showed that these genotypescould be distinguished both morphologically and genetically.

Bazı Soya Fasulyesi [Glycine Max (L.) Merr.] Genotipleri Arasında Agronomik Özelliklerin ve ISSR Yönteminin Karşılaştırmalı Analizi

Bu çalışmada, 12 soya fasulyesi genotipi arasındaki genetik çeşitliliği, rastlantısal basit dizi tekrarları (ISSR) ve agronomik özellikler kullanarak araştırıldı. Bu genotiplerin yapraklarından DNA izole edildi. Moleküler karakterizasyon için, toplam 26 ISSR primeri ve sekiz agronomik özellik değerlendirildi. ISSR analizi 88 polimorfik bant ortaya çıkardı. ISSR analizine ve agronomik özelliklere göre genotipler arasındaki genetik çeşitlilik sırasıyla Nei homolojisi ve Euclidian mesafesine göre hesaplandı ve genetik benzerliği yansıtan dendrogramlar sırasıyla UPGMA ve NTSYSpc kullanılarak yapıldı. ISSR analizi için kullanılan Nei’nin homoloji katsayısı değerleri %78- 84 arasında ve tarımsal veriler için kullanılan ortalama Euclidean mesafesi 1.96-9.77 arasında değişmiştir. Bu çalışmada değerlendirilen soya fasulyesi genotipleri oldukça benzer olmasına rağmen, dendrogramlar bu genotiplerin hem morfolojik hem de genetik olarak ayırt edilebileceğini göstermiştir.

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Abdelmigid HM 2012. Efficiency of random amplified polymorphic DNA (RAPD) and inter-simple sequence repeats (ISSR) markers for genotype fingerprinting and genetic diversity studies in canola (Brassica napus). African Journal of Biotechnology, 11: 6409-6419.

Agarwal PC 2014. Genetic diversity analysis among soybean [Glycine max (L.) Merr.] Genotypes through ISSR Molecular Marker. International Journal of Pure and Applied Sciences 01:25-30.

Aghaei M, Darvishzadeh R, Hassani A 2012. Molecular characterization and similarity relationships among Iranian basil (Ocimum basilicum L.) accessions using inter simple sequence repeat markers. The Revista Ciência Agronômica 43: 312– 320.

Arslan E, Tamkoc A 2011. The application of ISSRPCR to determine the genetic relationship and genetic diversity between narrow leaved Bluegrass (Poa angustifolia) and Rough Bluegrass (Poa trivialis) accessions. Turkish Journal of Biology 35: 415-423.

Baloch FS, Kurt C, Arioğlu H, Özkan H 2010. Assaying of diversity among Soybean (Glycin Max (L.) Merr.) and Peanut (Arachis Hypogaea L.) genotypes at DNA Level. Turkish Journal of Agriculture and Forestry 34: 285-301.

Bhatia R, Singh K, Jhang T, Sharma TR 2009. Assessment of clonal fidelity of micropropagated gerbera plants by ISSR markers. Scientia Horticulturae 119: 208–211.

Brick AF, Sivolap YM 2001. Molecular identification and certification of soybean (Glycin max L.) cultivars. Russian Journal of Genetics 37: 1061- 1067.

Chauhan DK, Bhat JA, Thakur AK, Kumari S, Hussain Z, Satyawathi CT 2015. Molecular characterization and genetic diversity assessment in soybean [Glycine max (L.) Merr.] varieties using SSR markers. Indian Journal of Biotechnology 14: 504-510.

Doldi ML, Vollmann J, Lelley T 1997. Genetic diversity in soybean as determined by RAPD and microsatellite analysis. Plant Breeding 116: 331- 335.

Doyle JJ, Doyle JL 1990. Isolation of plant DNA from fresh tissue. Focus 12: 13-15

Dwivedi SL, Gurtu S, Chandra S, Yuejin W, Nigam SN 2001. Assesssment of genetic diversity among selected groundnut germplasm. 1. RAPD analysis. Plant Breeding 120: 345-350.

Fukuda Y 1933. Cytogenetical studies on the wild and cultivated Manchurian soybeans (Glycine L). Journal of Japanese Botany 6: 489-506.

Hassan SM 2013. Soybean, nutrition and health. In: “Soybean-Bio-Active Compounds.” InTech. 453-473

He S, Wang Y, Volis S, Li D, Yi T 2012. Genetic Diversity and Population Structure: Implications for Conservation of Wild Soybean (Glycine soja Sieb. et Zucc) Based on Nuclear and Chloroplast Microsatellite Variation. International Journal of Molecular Sciences 13: 12608-12628.

Herselman L 2003. Genetic variation among South African cultivated peanut (Arachis hypogaea L.) genotypes as revealed by AFLP analysis. Euphytica 133: 319-327

Ildis 2001. “Legumes of the World”. International Legume Database & Information Service, The University of Reading, UK.

İşler N, Çalışkan ME 1998. GAP bölgesi ekolojik koşullarında soyada (Glycine max (L.) Merr.) verim ve verime etkili bazı özelliklerin korelasyonu ve path analizi. Turkish Journal of Agriculture and Forestry 22: 1-5.

Jin Y, Zhang WJ, Fu DX 2003. Sampling strategy within a wild soybean population based on its genetic variation detected by ISSR markers. Acta Botanica Sinica 8: 995-1002.

Kumar P, Gupta K, Misra K, Modi R, Pandey K 2009. Potential of molecular markers in plant biotechnology. Plant Omics Journal 2: 141-162.

Lam HM, Xu X, Liu X, Chen WB, Yang GH, Wong FL, Li MW, He WM, Qin NB, Jian M, Shao G, Wang J, Sun SS and Zhang G 2010. Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection. Nature Genetics 42: 1053–1061.

Maughan PJ, Saghai MA, Maroof G, Buss R, Huestis GM 1969. Amplified fragment length polymorphism (AFLP) in soybean: Species diversity, inheritance, and nearisogenic line analysis. Theoretical and Applied Genetics 93: 392-401.

Meena RK, Ambresh K, Sanket T 2015. Molecular Identity Using Inter-Simple Sequence Repeat & Random Amplified Polymorphic DNA Markers in Soybean (Glycine Max) Cultivars. Current Trends in Biotechnology and Pharmacy 9: 16-22.

Monpara J, Kiran C, Vrinda T 2017. ISSR studies on small and large seed varieties of Glycine max. Journal of Pharmacognosy and Phytochemistry 6: 1652-1656

Nadeem MA, Nawaz MA, Shahid MQ, Doğan Y, Comertpay G, Yıldız M, Hatipoğlu R, Ahmad F, Alsalehh A, Labhanei N, Özkan H, Chungb G, Baloch FS 2018. DNA molecular markers in plant breeding: current status and recent advancements in genomic selection and genome editing. Biotechnology & Biotechnological Equipment 32: 261-285.

Nei M 1978. Estimation of average heterozygosities and genetic distances from a small number of individuals. Genetics 89: 583-590.

Rohlf FJ 2000. Ntsys-Pc: Numerical Taxonomy System. Ver. 2.1. Exeter Publishing, Ltd. Setauket, Ny.

Satyavathi CT, Bhat KV, Bharadwaj C, Tiwari SP, Chaudhury VK 2006. AFLP analysis of genetic diversity in Indian soybean (Glycin max (L.) Merr.) varieties. Genetic Resources and Crop Evolution 53: 1069-1079.

Singh RJ, Nelson RL, Chung GH 2007. Soybean (Glycine max (L.) Merr.). Genetic resources, chromosome engineering, and crop improvement. Oilseed crops, CRC Press, Boca Raton: Ed. Singh RJ), 4:13-50.

Tantasawat P, Trongchuen J, Prajongjai T, Jenweerawat S, Chaowiset W 2011. SSR analysis of soybean (Glycine max (L.) Merr.) genetic relationship and variety ıdentification in thailand. Australian Journal of Crop Science 5: 283-290.

Ude GN, Kenworthy WJ, Costa JM, Cregan PB, Alvernaz J 2003. Genetic diversity of soybean cultivars from China, Japan, North America and North American ancestral lines determined by Amplified Fragment Length Polymorphism. Crop Science 43: 1858-1867.

Wang L, Guan R, Zhanxiong L, Chang R, Qiu L 2006. Genetic diversity of Chinese cultivated soybean revealed by SSR markers. Crop Science 46: 1032- 1038.

Wang M, Li RZ, Yang WM, Du WJ 2010. Assessing the genetic diversity of cultivars and wild soybeans using SSR markers. African Journal of Biotechnology 9: 4857-4866.

Whigham DK, Minor HC 1978. Agronomic characteristics and environmental stress. (Soybean, physiology, agronomy, and utilization. Academic Press, New York: Ed. Norman AG) 77-118.

Xie F, Yoshihito T 2005. Phylogenetic analysis of soybean [Glycine max (L.) Merr.] cultivars from different regions through ISSR markers. Soybean Science 24: 161-165.

Yadav VK, Kumar S, Panwar RK 2007. Measurement of genetic diversity in fieldpea (Pisum sativum L.) genotype using RAPD markers. Genetic Resources and Crop Evolution 54: 1285-1289.

Yılmaz HA, Efe L 1998. Bazı Soya [Glycine Max (L.) Merrill] Çeşitlerinin Kahramanmaraş Koşullarında II. Ürün Olarak Yetiştirilebilme Olanakları. Turkish Journal of Agriculture and Forestry 22: 135-142.

Yoon M, Lee J, Kim C, Kang J, Cho E, Baek H 2009. DNA Profiling and Genetic Diversity of Korean Soybean (Glycine max (L.). Merrill) Landraces by SSR Markers. Euphytica 165: 69-77.

Youssef MA, Mansour A, Solliman SS 2010. Molecular markers for new promising drought tolerant lines of rice under drought Stress via RAPD-PCR and ISSR Markers. Journal of American Science 6: 355-363.
KSÜ Tarım ve Doğa Dergisi-Cover
  • ISSN: 2619-9149
  • Yayın Aralığı: Yılda 6 Sayı
  • Başlangıç: 2018
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