Yak Sığırında SIRT1 ve H-FABP Genlerinde Belirlenen Tek Nükleotid Polimorfizmleri ve Büyüme Özellikleri İle İlişkisi

Bu çalışmanın amacı Yak sığırı yetiştiriciliğinde Sirtuin 1 (SIRT1) ve Kalp tipi yağ asidi bağlayıcı protein (H-FABP) genlerinin kullanılabilirliğinin araştırılmasıdır. Yerel 409 Çin yak sığırında SIRT1 geninin (g.1906A>G) 5’UTR’sinde ve H-FABP geninin (g.6643C>T) ekzon 1’inde olmak üzere iki adet tek nükleotid polimorfizmi (SNP) DNA sekanslama teknolojisi ile tespit edildi. Ki kare testi tüm varyasyonların Hardy-Weinberg denklemi içerisinde olduğunu gösterdi (P>0.05). İlişki analizi, SIRT1 geninin g.1906A>G ve H-FABP geninin g.6643C>T’sinin vücut ağırlığı ve uzunluğu ile anlamlı derecede ilişkili olduğunu gösterdi (P

SNPs Detected in the SIRT1 and H-FABP Genes and Their Association with Growth Traits in Yak

The aims of this study were to investigate whether the Sirtuin 1 (SIRT1) and Hear fatty acid binding protein (H-FABP) genes could be usedas candidate genes in the breeding of yak. In 409 indigenous Chinese yaks, two single nucleotide polymorphisms (SNPs) were identifiedthrough DNA sequencing technology, including a SNP within the 5’UTR of SIRT1 (g.1906A>G), and a SNP in the exon 1 of H-FABP (g.6643C>T).The chi-square test suggested that all the variations were in Hardy-Weinberg equilibrium (P>0.05). An association analysis suggested thatg.1906A>G of SIRT1 gene and g.6643C>T of H-FABP gene exhibited significant correlation with body weight and body length (P

___

  • 1. Shi Y, Hu Y, Wang J, Elzo MA, Yang X, Lai S: Genetic diversities of MT-ND1 and MT-ND2 genes are associated with high-altitude adaptation in yak. Mitochondrial DNA A, 29, 485-494, 2018. DOI: 10.1080/ 24701394.2017.1307976
  • 2. Xia W, Osorio JS, Yang Y, Liu D, Jiang MF: Characterization of gene expression profiles related to yak milk protein synthesis during the lactation cycle. J Dairy Sci, 101, 11150-11158, 2018. DOI: 10.3168/jds.2018- 14715
  • 3. Cai X, Mipam TD, Zhang H, Yue B: Abundant variations of MC4R gene revealed by Phylogenies of Yak (Bos grunniens) and other mammals. Mol Biol Rep, 38, 2733-2738, 2011. DOI: 10.1007/s11033-010-0418-2
  • 4. Wang K, Hu Q, Ma H, Wang L, Yang Y, Luo W, Qiu Q: Genome-wide variation within and between wild and domestic yak. Mol Ecol Resour, 14, 794-801, 2014. DOI: 10.1111/1755-0998.12226
  • 5. Guarente L: Calorie restriction and sirtuins revisited. Genes Dev, 27, 2072-2085, 2013. DOI: 10.1101/gad.227439.113
  • 6. Iyer S, Han L, Bartell SM, Kim HN, Gubrij I, de Cabo R, O’Brien CA, Manolagas SC, Almeida M: Sirtuin1 (Sirt1) promotes cortical bone formation by preventing beta-catenin sequestration by FoxO transcription factors in osteoblast progenitors. J Biol Chem, 289, 24069- 24078, 2014. DOI: 10.1074/jbc.M114.561803
  • 7. Schenk S, McCurdy CE, Philp A, Chen MZ, Holliday MJ, Bandyopadhyay GK, Osborn O, Baar K, Olefsky JM: Sirt1 enhances skeletal muscle insulin sensitivity in mice during caloric restriction. J Clin Invest, 121, 4281-4288, 2011. DOI: 10.1172/JCI58554
  • 8. Yoshizaki T, Schenk S, Imamura T, Babendure JL, Sonoda N, Bae EJ, Oh DY, Lu M, Milne JC, Westphal C, Bandyopadhyay G, Olefsky JM: SIRT1 inhibits inflammatory pathways in macrophages and modulates insulin sensitivity. Am J Physiol Endocrinol Metab, 298, E419-E428, 2010. DOI: 10.1152/ajpendo.00417.2009
  • 9. Bordone L, Motta MC, Picard F, Robinson A, Jhala US, Apfeld J, McDonagh T, Lemieux M, McBurney M, Szilvasi A, Easlon EJ, Lin SJ, Guarente L: Sirt1 regulates insulin secretion by repressing UCP2 in pancreatic β cells. PLoS Biol, 4 (2): e31, 2006. DOI: 10.1371/journal. pbio.0040031
  • 10. Rodgers JT, Lerin C, Haas W, Gygi SP, Spiegelman BM, Puigserver P: Nutrient control of glucose homeostasis through a complex of PGC- 1alpha and SIRT1. Nature, 434, 113-118, 2005. DOI: 10.1038/nature03354
  • 11. Kitamura YI, Kitamura T, Kruse JP, Raum JC, Stein R, Gu W, Accili D: FoxO1 protects against pancreatic β cell failure through NeuroD and MafA induction. Cell Metab, 2, 153-163, 2005. DOI: 10.1016/j.cmet.2005.08.004
  • 12. Smathers RL, Petersen DR: The human fatty acid-binding protein family: Evolutionary divergences and functions. Hum Genomics, 5, 170- 191. 2011. DOI. 10.1186/1479-7364-5-3-170
  • 13. Chen QM, Wang H, Zeng YQ, Chen W: Developmental changes and effect on intramuscular fat content of H-FABP and A-FABP mRNA expression in pigs. J Appl Genet, 54, 119-123, 2013. DOI: 10.1007/s13353- 012-0122-0
  • 14. Shearer J, Fueger, PT, Bracy, DP, Wasserman, DH, Rottman, JN: Partial gene deletion of heart-type fatty acid-binding protein limits the severity of dietary-induced insulin resistance. Diabetes, 54, 3133-3139, 2005. DOI: 10.2337/diabetes.54.11.3133
  • 15. Vergnes L, Chin R, Young SG, Reue K: Heart-type fatty acid-binding protein is essential for efficient brown adipose tissue fatty acid oxidation and cold tolerance. J Biol Chem, 286, 380-390, 2011. DOI: 10.1074/jbc. M110.184754
  • 16. Prosdocimo DA, Sabeh MK, Jain MK: Kruppel-like factors in muscle health and disease. Trends Cardiovasc Med, 25, 278-287, 2015. DOI: 10.1016/j.tcm.2014.11.006
  • 17. Li A, Wu L, Wang X, Xin Y, Zan L: Tissue expression analysis, cloning and characterization of the 5’-regulatory region of the bovine FABP3 gene. Mol Biol Rep, 43, 991-998, 2016. DOI: 10.1007/s11033-016-4026-7
  • 18. Cho KH, Kim MJ, Jeon GJ, Chung HY: Association of genetic variants for FABP3 gene with back fat thickness and intramuscular fat content in pig. Mol Biol Rep, 38, 2161-2166, 2011. DOI: 10.1007/s11033-010-0344-3
  • 19. Gui L, Hao R, Zhang Y, Zhao X, Zan L: Haplotype distribution in the class I sirtuin genes and their associations with ultrasound carcass traits in Qinchuan cattle (Bos taurus). Mol Cell Probes, 29, 167-171, 2015. DOI: 10.1016/j.mcp.2015.03.007
  • 20. Shimoyama Y, Suzuki K, Hamajima N, Niwa T: Sirtuin 1 gene polymorphisms are associated with body fat and blood pressure in Japanese. Transl Res, 157, 339-347, 2011. DOI: 10.1016/j.trsl.2011.02.004
  • 21. Gilbert RP, Bailey DR, Shannon NH: Linear body measurements of cattle before and after 20 years of selection for postweaning gain when fed two different diets. J Anim Sci, 71, 1712-1720, 1993.
  • 22. Qiang L, Wang L, Kon N, Zhao W, Lee S, Zhang Y, Rosenbaum M, Zhao Y, Gu W, Farmer SR, Accili D: Brown remodeling of white adipose tissue by SirT1-dependent deacetylation of Ppargγ. Cell, 150, 620-632, 2012. DOI: 10.1016/j.cell.2012.06.027
  • 23. Jung HY, Lee D, Ryu HG, Choi BH, Go Y, Lee N, Lee D, Son HG, Jeon J, Kim SH, Yoon JH, Park SM, Lee SV, Lee IK, Choi KY, Ryu SH, Nohara K, Yoo SH, Chen Z, Kim KT: Myricetin improves endurance capacity and mitochondrial density by activating SIRT1 and PGC-1α. Sci Rep, 7:6237, 2017. DOI: 10.1038/s41598-017-05303-2
  • 24. Gilbert RE, Thai K, Advani SL, Cummins CL, Kepecs DM, Schroer SA, Woo M, Zhang Y: SIRT1 activation ameliorates hyperglycaemia by inducing a torpor-like state in an obese mouse model of type 2 diabetes. Diabetologia, 58, 819-827, 2015. DOI: 10.1007/s00125-014-3485-4
  • 25. Li M, Sun X, Hua L, Lai X, Lan X, Lei C, Zhang C, Qi X, Chen H: SIRT1 gene polymorphisms are associated with growth traits in Nanyang cattle. Mol Cell Probes, 27, 215-220, 2013. DOI: 10.1016/j.mcp.2013.07.002
  • 26. Gui L, Wang H, Wei S, Zhang Y, Zan L: Molecular characterization, expression profiles, and analysis of Qinchuan cattle SIRT1 gene association with meat quality and body measurement traits (Bos taurus). Mol Biol Rep, 41, 5237-5246, 2014. DOI: 10.1007/s11033-014-3393-1
  • 27. Jin Y, Yang Q, Gao J, Tang Q, Duan B, Yu T, Qi X, Liu J, Wang R, Dang R, Lei C, Chen H, Lan X: Detection of insertions/deletions within SIRT1, SIRT2 and SIRT3 genes and their associations with body measurement traits in cattle. Biochem Genet, 56, 663-676, 2018. DOI: 10.1007/s10528- 018-9868-3
  • 28. Pagani F, Baralle FE: Genomic variants in exons and introns: Identifying the splicing spoilers. Nat Rev Genet, 5, 389-396, 2004. DOI: 10.1038/nrg1327
  • 29. Huang YZ, Li MX, Wang J, Zhan ZY, Sun YJ, Sun JJ, Li CJ, Lan XY, Lei CZ, Zhang CL, Chen H: A 5’-regulatory region and two coding region polymorphisms modulate promoter activity and gene expression of the growth suppressor gene ZBED6 in cattle. PLoS One, 8 (11): e79744, 2013. DOI: 10.1371/journal.pone.0079744
  • 30. Zhang CF, Chen H, Zhang ZY, Zhang LZ, Yang DY, Qu YJ, Hua LS, Zhang B, Hu SR: A 5’UTR SNP of GHRHR locus is associated with body weight and average daily gain in Chinese cattle. Mol Biol Rep, 39, 10469- 10473, 2012. DOI: 10.1007/s11033-012-1927-y
  • 31. Lee SH, Choi YM, Choe JH, Kim JM, Hong KC, Park HC, Kim BC: Association between polymorphisms of the heart fatty acid binding protein gene and intramuscular fat content, fatty acid composition, and meat quality in Berkshire breed. Meat Sci, 86, 794-800, 2010. DOI: 10.1016/j.meatsci.2010.06.024
  • 32. Li X, Kim SW, Choi JS, Lee YM, Lee CK, Choi BH, Kim TH, Choi YI, Kim JJ, Kim KS: Investigation of porcine FABP3 and LEPR gene polymorphisms and mRNA expression for variation in intramuscular fat content. Mol Biol Rep, 37, 3931-3939, 2010. DOI: 10.1007/s11033-010-0050-1
  • 33. Huang YZ, Wang J, Zhan ZY, Cao XK, Sun YJ, Lan XY, Lei CZ, Zhang CL, Chen H: Assessment of association between variants and haplotypes of the IGF2 gene in beef cattle. Gene, 528, 139-145, 2013. DOI: 10.1016/j. gene.2013.07.035
  • 34. Ma X, Guan L, Xuan J, Wang H, Yuan Z, Wu M, Liu R, Zhu C, Wei C, Zhao F, Du L, Zhang L: Effect of polymorphisms in the CAMKMT gene on growth traits in Ujumqin sheep. Anim Genet, 47, 618-622, 2016. DOI: 10.1111/age.12455
  • 35. Duan J, Wainwright MS, Comeron JM, Saitou N, Sanders AR, Gelernter J, Gejman PV: Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor. Hum Mol Genet, 12, 205-216, 2003. DOI: 10.1093/hmg/ ddg055
  • 36. Chamary JV, Hurst LD: Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals. Genome Biol, 6 (9): R75, 2005. DOI: 10.1186/gb-2005-6-9-r75
  • 37. Gui L, Jiang B, Zhang Y, Zan L: Sequence variants in the bovine silent information regulator 6, their linkage and their associations with body measurements and carcass quality traits in Qinchuan cattle. Gene, 559, 16-21, 2015. DOI: 10.1016/j.gene.2015.01.008
  • 38. Liu WC, Lai SJ: A synonymous mutation of uncoupling protein 2 (UCP2) gene is associated with growth performance, carcass characteristics and meat quality in rabbits. J Anim Sci Technol, 58:3, 2016. DOI: 10.1186/ s40781-016-0086-4
Kafkas Üniversitesi Veteriner Fakültesi Dergisi-Cover
  • ISSN: 1300-6045
  • Yayın Aralığı: Yılda 6 Sayı
  • Başlangıç: 1995
  • Yayıncı: Kafkas Üniv. Veteriner Fak.
Sayıdaki Diğer Makaleler

Tahıl Taneleri Olarak Mısır ve Arpa Kapsayan Karma Yemlere Grit İlavesinin Broylerlerde Performans ve Kesim Özelliklerine Etkileri

Handan ESER, Sakine YALÇIN, İlyas ONBAŞILAR, Ender BURÇAK, Suzan YALÇIN

Yeşil Çay Ekstraktı İlavesinin Boğa Sperması Dondurulmasına Etkisi

Fatih AVDATEK, Ruhi TÜRKMEN, Beste ÇİL, Muhammed Enes İNANÇ, Durmuş ORAKÇI, Umut TAŞDEMİR, Pürhan Barbaros TUNCER, Deniz YENİ

Evcil Hayvanlardan İzole Edilen Mantarların Teşhisinde Kullanılan Konvansiyonel ve ITS Dizi Analizi Metotlarının Karşılaştırılması

Seyyide SARIÇAM, İnci Başak MÜŞTAK, Hamit Kaan MÜŞTAK

The First Case of Anal Myiasis Caused by Chrysomya albiceps (Wiedemann, 1819) in a Dog Infested with Rhiphicephalus sanguineus (Latreille, 1806) Ticks Suspected to Cause Paralysis in Turkey

Onur CEYLAN, BİLAL DİK, Ceylan CEYLAN, Merve İDER, Erdem GÜLERSOY

Effect of Inhibin-βA Subunit Gene on Reproductive Performance of Kazakh Sheep in Non-breeding Season

? Zongsheng 1 ZHAO, Mengting ZHU, Shaoqi CAO, Manjun 1 ZHAI, Heng YANG, Ying NAN

Yak Sığırında SIRT1 ve H-FABP Genlerinde Belirlenen Tek Nükleotid Polimorfizmleri ve Büyüme Özellikleri İle İlişkisi

Yincang HAN, Yonggang SUN, Linsheng GUI

Yaşlı Farelerde Bağırsak Mukozası Bağışıklığına β-Kazomorfin-7’nin Etkisi

Dan YANG, Hong YIN, Ji-Jie LIU, Hui-Qing XU

Progesteron Temelli Östrus Senkronizasyonu Protokolüne Tabi Tutulan Repeat Breeder İneklerde Suni Tohumlama Sonrası İntrauterin Carvacrol İnfüzyonunun Gebelik Oranları Üzerine Etkisi

Umut Çağın ARI, Necdet Cankat LEHİMCİOĞLU, Yavuz ÖZTÜRKLER, Savaş YILDIZ

The Effect of Intrauterine Infusion of Carvacrol After Insemination on Conception Rate in Repeat Breeder Cows Subjected to Progesteron Based Estrus Synchronization Protocol

Necdet Cankat LEHİMCİOĞLU, Yavuz ÖZTÜRKLER, Savaş YILDIZ, Umut Çağın ARI

The Effects of Exogenous Fibrolytic Enzymes and a Ferulic Acid Esterase-Producing Inoculant Treatment on Digestibility and Conservation Characteristics of Corn Stover

HABİP MURUZ, Zehra SELÇUK, MUSTAFA SALMAN, Zeyno NUHOĞLU, İSMAİL KAYA, Nurcan ÇETİNKAYA