Mitochondrial DNA Sequence and Body Size Variations in Turkish Sardine (Sardina pilchardus) Stocks

Sardine (Sardina pilchardus) is one of the most important species among Turkish fisheries and is broadly distributed along its coastal waters. In the present study, mitochondrial DNA sequences from the cytochrome b (cytb) gene were examined to assess the genetic diversity of sardines inhabiting Turkish coastal waters. A fragment of sardine cytb DNA from each sample collected from 8 representative regions along the coastal zones was amplified by PCR analysis and subsequently sequenced. The results of sequence analysis determined the existence of variations in 16 single nucleotide sites within the 452 bp fragment of the cytb gene examined in the present study. Phylogenetic trees and pairwise analyses demonstrated a very small divergence (0.002%-0.44%) between the populations, suggesting the lack of population subdivisions. Furthermore, the results of this study revealed a pattern of high nucleotide homology among the adjacent populations, and a small number of nucleotide changes among disjunct populations, leading us to conclude that there is a genetic admixture among the populations inhabiting the coastal waters of Turkey, especially in those geographically close to each other. The results of this study suggest that sardine populations of coastal Turkey are part of a larger, self-recruiting population whose boundaries extend beyond the investigated area.

Mitochondrial DNA Sequence and Body Size Variations in Turkish Sardine (Sardina pilchardus) Stocks

Sardine (Sardina pilchardus) is one of the most important species among Turkish fisheries and is broadly distributed along its coastal waters. In the present study, mitochondrial DNA sequences from the cytochrome b (cytb) gene were examined to assess the genetic diversity of sardines inhabiting Turkish coastal waters. A fragment of sardine cytb DNA from each sample collected from 8 representative regions along the coastal zones was amplified by PCR analysis and subsequently sequenced. The results of sequence analysis determined the existence of variations in 16 single nucleotide sites within the 452 bp fragment of the cytb gene examined in the present study. Phylogenetic trees and pairwise analyses demonstrated a very small divergence (0.002%-0.44%) between the populations, suggesting the lack of population subdivisions. Furthermore, the results of this study revealed a pattern of high nucleotide homology among the adjacent populations, and a small number of nucleotide changes among disjunct populations, leading us to conclude that there is a genetic admixture among the populations inhabiting the coastal waters of Turkey, especially in those geographically close to each other. The results of this study suggest that sardine populations of coastal Turkey are part of a larger, self-recruiting population whose boundaries extend beyond the investigated area.

___

  • Aksıray, F. 1987. Türkiye Deniz Balıkları ve Tayin Anahtarları, İstanbul Universitesi Rektörlüğü Yayınları, İstanbul.
  • Atarhouch, T., Rüber, L., Gonzalez, E. G., Albert, E. M., Rami, M., Dakkak, A. and Zardoya, R. 2005. Signature of an early genetic bottleneck in a population of Moroccan sardines (Sardina pilchardus). Molecular Phylogenetics and Evolution, In Press, Corrected Proof, Available online 7 October.
  • Avise, J.C. 2000. Phylogeography. Harvard Univ. Press, Cambridge, MA, USA.
  • Belveze, H. and Erzini, K. 1983. The influence of hydroclimatic factors on the availability of the sardine (Sardina pilchardus, Walbaum) in the Moroccan Atlantic fishery. FAO Fish Rep. 291: pp. 285-328.
  • Beverton, R.J.H. 1990. Small marine pelagic fish and the threat of fishing: are they endangered. J. Fish Biol. 37: 5-16.
  • Borsa, P. 2002. Allozyme, mitochondrial-DNA, and morphometric variability indicate cryptic species of anchovy (Engraulis encrasicolus). Biol. J. the Linnean Soc. 75: 261-269.
  • Borsa, P., Collet, A. and Durand, J.D. 2004. Nuclear-DNA markers confirm the presence of two anchovy species in the Mediterranean. Comptes Rendus Biologies. 327: 1113-1123.
  • Brown, W.M. 1983. Evolution of animal mitochondrial DNA. In: Evolution of genes and proteins. (eds. M. Nei and R.K. Koehn), Sinauer, Sunderland, Mass. pp. 62-88.
  • Chikhi, L., Agnese, J.F. and Bonhomme, F. 1997. Fortes differences des ADN mitochondriaux de populations de Sardinella aurita de la mer Mediterranee et de l’Atlantique Est. Comptes Rendus de l’Academie des Sciences–Series III–Sciences de la Vie 320: 289- 297.
  • Cihangir, B. 1996. Reproduction of European Pilchard, Sardina pilchardus (Walbaum, 1792) in the Aegean Sea. Turk. J. Zool. 20: 33-50.
  • DIE, 2004. 2004. Yılı Su Ürünleri İstatistikleri. T.C. Başbakanlık Devlet İstatistik Enstitüsü, Ankara.
  • FAO, 1999. 1988-1997. Aquaculture Production Statistics. FAO Fisheries Circular, No: 815, Rev.11, Rome.
  • Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17: 368-376.
  • Felsenstein, J. 1995. PHYLIP (Phylogeny Inference Package). University of Washington, Seattle.
  • Finney, B.P., Gregory-Eaves, I., Douglas, M.S.V. and Smol, J.P. 2002. Fisheries productivity in the northeastern Pacific Ocean over the last 2200 years. Nature 416: 729-33
  • Grant, W.A.S. and Bowen, B.W. 1998. Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation. J. Hered. 89: 415-426.
  • Harrison, R.G. 1989. Animal mitochondrial DNA as a tool in systematic and evolutionary biology. Trends in Ecology and Evolution. 5: 6- 11.
  • Hauser, L., Adcock, G.J., Smith, P.J., Ramirez, J.H.B. and Carvalho, G.R. 2002. Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper (Pagrus auratus), Proc. Natl. Acad. Sci. USA 99: 11742- 11747.
  • Hewitt, G.M. 1996. Some genetic consequences of ice ages, and their role in divergence and separation. Biol. J. the Linean Soc. 58: 247-276.
  • Hutchings, J.A. 2000. Collapse and recovery of marine fishes. Nature 406, pp. 882-885.
  • Jackson, J.B., Kirby, M.X., Berger, W.H., Bjorndal, K.A., Botsford, L.W., Bourque, B.J., Bradbury, R.H,. Cooke, R., Erlandson, J., Estes, J.A., Hughes, T.P., Kidwell, S., Lange, C. B., Lenihan, H.S., Pandolfi, J.M., Peterson, C.H., Steneck, R.S., Tegner, M.J. and Warner, R.R. 2001. Historical overfishing and the recent collapse of coastal ecosystems. Science 293: 629-637.
  • Jerome, M., Lemaire, C., Bautista, J.M., Fleurence, J. and Etienne, M. 2003. Molecular phylogeny and species identification of sardines. J. Agric. Food Chem. 51: 43-50.
  • Kara, A. and Ozekinci, U. 2002. Izmir Körfezi’nde sardalya (Sardina pilchardus Walbaum, 1792) balığı avcılığında kullanılan galsama ağlarının seçiciliği. E.U. J. Fish. & Aqua. Sci.: 465-472.
  • Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
  • Knutsen, H., Jorde, P.E., André, C. and Stenseth, N.C. 2003. Fine- scaled geographical population structuring in a highly mobile marine species: the Atlantic cod. Mol. Ecol. 12: 385-394.
  • Lecomte, F., Grant, W.S., Dodson, J.J., Rodriguez-Sanchez, R. and Bowen, B.W. 2004. Living with uncertainty: genetic imprints of climate shifts in East Pacific anchovy (Engraulis mordax) and sardine (Sardinops sagax). Mol Ecol. 8: 2169-82.
  • Ramon, M.M. and Castro, J.A. 1997. Genetic variation in natural stocks of Sardina pilchardus (sardines) from the western Mediterranean Sea. Heredity 78: 520-528.
  • Reilly, A. and Ward, D. 1999. Microsatellite loci to determine population structure of the Patagonian toothfish Dissostichus eleginoides. Mol. Ecol. 8: 1753-1768.
  • Saccone, C., Gissi, C., Lanave, C., Larizza, A., Pesole, G. and Reyes, A. 2000. Evolution of the mitochondrial genetic systems: an overview. Gene 261: 153-159.
  • Saitou, N. and Nei, M. 1987. The Neighbor-joining Method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
  • Sambrook, J., Fritsch, E.F. and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
  • Samonte, I.E., Pagulayan, R.C. and Mayer, W.E. 2000. Molecular phylogeny of Philippine freshwater sardines based on mitochondrial DNA analysis. J. Hered. 91: 247-53.
  • Sebastio, P., Zanelli, P. and Neri, T.M. 2001. Identification of anchovy (Engraulis encrasicholus L.) and gilt sardine (Sardinella aurita) by polymerase chain reaction, sequence of their mitochondrial cytochrome b gene, and restriction analysis of polymerase chain reaction products in semipreserves. J. Agric. Food Chem. 49: 1194-9.
  • Spanakis, E., Tsimendies, N. and Zouros, E. 1989. Genetic differences between populations of sardine, Sardina pilchardus, and anchovy, Engraulis encrasicolus, in Aegean and Ionian Seas. J. Fish. Biol. 35: 417-437.
  • Stabile, J., Waldman, J.R., Parauka, F. and Wirgin, I. 1996. Stock structure and homing fidelity in Gulf of Mexico sturgeon (Acipenser oxyrinchus desotoi) based on restriction fragment length polymorphism and sequence analyses of mitochondrial DNA. Genetics 144: 767-75.
  • Tinti, F., Di Nunno, C., Guarniero, I., Talenti, M., Tommasini, S., Fabbri, E. and Piccinetti, C. 2002. Mitochondrial DNA sequence variation suggests the lack of genetic heterogeneity in the Adriatic and Ionian stocks of Sardina pilchardus. Mar. Biotechnol. 4: 163-72.
  • Türker, D. 1998. Ege Denizi Edremit körfezi’nde sardalya balığı Sardina pilchardus (Walbaum, 1792)’un yumurta ve larvalarının biyolojik ve ekolojik özellikleri üzerine bir araştırma. M. Sc.Thesis. University of Balıkesir, Dept. Biol. Balıkesir, 105 pp.
  • Williams, J.G. 2003. Sardine fishing in the early 20thcentury. Science 300: 2032.
Turkish Journal of Zoology-Cover
  • ISSN: 1300-0179
  • Yayın Aralığı: Yılda 6 Sayı
  • Yayıncı: TÜBİTAK
Sayıdaki Diğer Makaleler

Mitochondrial DNA Sequence and Body Size Variations in Turkish Sardine (Sardina pilchardus) Stocks

Aliye SARMAŞIK, Fatma ARIK ÇOLAKOĞLU, Tülay ALTUN

Wood destroying ınsects in Düzce province

Akif KETEN, Beşir YÜKSEL, Süleyman AKBULUT

The species of the genus Monatractides Viets, 1926 (Acari, Hydrachnidia, Torrenticolidae) in Turkey

Ömer Yunus BOYACI, Muhlis ÖZKAN

Nitrate-Induced Morphological Anomalies in the Tadpoles of Nyctibatrachus major and Fejervarya limnocharis (Anura: Ranidae)

Sannanegunda Venkatarama KRISHNAMURTHY, Das MEENAKUMARI

The Fruit Fly (Diptera: Tephritidae) Fauna of Kayseri and Sivas Provinces with a New Record for Turkey

Murat KÜTÜK

Characterization of branchial Na,K-ATPase from three freshwater fish species (Oreochromis niloticus, Cyprinus carpio, and Oncorhynchus mykis)

Mustafa CANLI, Gülizar ATLI

The Geometrid Moths (Lepidoptera) from the Middle and Eastern Black Sea Regions of Turkey

Feza CAN

SEM Observations and Morphometrics of the Cabbage Cyst Nematode, Heterodera cruciferae Franklin, 1945, Collected Where Brassica spp. Are Grown in Tabriz, Iran

Habibeh JABBARI, Gholamreza NIKNAM

Tatlı Su Balıklarındaki (Oreochromis niloticus, Cyprinus carpio, Oncorhynchus mykiss) Solungaç Na,K-ATPaz Enzimlerinin Karakterizasyonu

Gülüzar ATLI, Mustafa CANLI

New Records for Two Sergestids: Sergestes orientalis Hansen, 1919 and Sergia umitakae Hashizume and Omori, 1995 (Crustacea, Decapoda, Sergestidae)

Farzana YOUSUF, Quddusi B. KAZMI