DFT / TDDFT insights into excited state intra-molecular hydrogen atom transfer mechanism in Liqcoumarin: an EFP1 study

DFT / TDDFT insights into excited state intra-molecular hydrogen atom transfer mechanism in Liqcoumarin: an EFP1 study

The theoretical calculations were carried out on Liqcoumarin (LC) and its water complex $LC+(H_2 0)_4 -[LCH]$ at the ground (S0 ) / first excited states (S1 ) by employing density functional theory (DFT) / state specific time-dependent density functional theory (SS-TDDFT). In LC and LCH, there is an intra-molecular hydrogen bond between hydroxyl group and acetyl group along with four inter-molecular hydrogen bonds in the hydrated molecule. The computational studies of molecular structural parameters, electrostatic potential, NBO analysis, molecular orbital’s, and UV-Vis spectra of both molecules under polar solvents were explored by B3LYP / 6-31G (d,p) / PCM / EFP1 method. The intra-molecular hydrogen atom transpires between hydroxyl to acetyl group in both pure and hydrated molecules confirm the ICT process, and it affirms through potential energy surface (PES) scans.

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  • 1. Miao M, Shi Y. Reconsiderationon hydrogen bond strengthening or cleavage of photo-excited coumarin 102 in aqueous solvent:A DFT / TDDFT study. Journal of Computational Chemistry 2011; 32 (14): 3058-3061. doi: 10.1002/jcc.21888
  • 2. Ramegowda M. Change in energy of hydrogen bonds upon ex citation of 6-aminocoumarin: TDDFT / EFP1 study. New Journal of Chemistry 2013; 37: 2648-2653. doi: 10.1039/C3NJ00446E
  • 3. Ramegowda M. A TDDFT/EFP1 study on hydrogen bonding dynamics of coumarin 151 in water. Spectrochim ActaA 2015; 137: 99-104. doi: 10.1016/j.saa.2014.08.017
  • 4. Zhang M, Ren B, Wang Y, Zhao C. A DFT/TDDFT study on the excited hydrogen bonding dynamics in water solution. Spectrochimica Acta Part A2013; 101: 191-195. doi: 10.1016/j.saa.2012.09.045
  • 5. Li H, Pome lli CS, Jensen JH, Continuum solvation of large molecules describe d by QM/MM: a semi-iterative imple mentation of the PCM/ EFP inte rface, Theoret. Chimica Acta 2003; 109 : 71-84. doi: 10.1007/s00214-002-0427-x
  • 6. Fedorov DG, Kitaura K, Li H, Jensen JH, Gorden MS. The polarizable continuum model interfaced with the Fragment Molecular Orbital method. Journal of Computational Chemistry 2006; 27: 976-985. doi: 10.1002/jcc.20406
  • 7. Ramu YL, Jagadeesha K, Shivalingaswamy T, Ramegowda M. Microsolvation, hydrogen bond dynamics and excited state hydrogen atom transfer mechanism of 2’,4’-dihydroxy chalcone. Chemical Physics Letters 2020; 739: 1–5. doi: 10.1016/j.cplett.2019.137030
  • 8. Sardari S, Mori Y, Horita K, Micetich RG, Nishibe S, Danesh-talab M. Synthesis and antifungal activity of coumarins and angular furanocoumarins. Bioorganic & Medicinal Chemistry Letters 1999; 7: 1933. doi: 10.3390/molecules 22101672
  • 9. Savarese M, Netti PA, Adamo C, Rega N, Ciofini I. Exploring the metric of excited state proton transfer reactions. The Journal of Physical Chemistry B 2013; 117: 16165. doi: 10.1021/jp507425x
  • 10. Jagadeesha K, Ramu YL, Ramegowda M, Lokanath NK. Excited state hydrogen atom transfer in micro-solvated dicoumarol: A TDDFT / EFP1 study. Spectrochim. ActaA 2019; 208: 325-330. doi: 10.1016/j.saa.2018.10.015
  • 11. Parvaiz M, Hussain K, Khalid S, Hussnain N, Iram N et al. A review: medicinal importance of Glycyrrhiza glabra L. (Fabaceae Family). Global Journal of Pharmacology 2014; 8: 8-13. doi: 10.5829/idosi.gjp.2014.8.1.81179
  • 12. Altay V, Karahan F, Öztürk M, Hakeem KR, Ilhan E et al. Molecular and ecological investigations on the wild populations of Glycyrrhiza L. taxa distributed in the East Mediterranean Area of Turkey. Journal of Plant Research 2016; 129: 1021–1032. doi: 10.1007/s10265-016- 0864-6
  • 13. Gupta KK, Taneja SC, Ahar KL, Atal CK. Flavonoids of andrographis paniculata. Phytochemistry 1983; 22: 314-315. doi: 10.1016/S0031- 9422(00)80122-3
  • 14. Williamson EM. Potter’s cyclopedia of herbal medicine. C.W. Daniel, Saffron Walden, pp 269–271. 2003. doi: 10.1211/002235704322728111
  • 15. Kinoshita T, Tamura Y, Mizutani K. The isolation and structure elucidation of minor isoflavonoids from licorice of Glycyrrhiza glabra origin. Chemical and Pharmaceutical Bulletin 2005; 53: 847–849. doi: 10.1248/cpb.53.847
  • 16. Isbrucker RA, Burdock GA. Risk and safety assessment on the consumption of Licoriceroot (Glycyrrhiza sp.), its extract and powder as a food ingredient, with emphasis on the pharmacology and toxicology of glycyrrhizin. Regul Toxicol Pharmacol 2006; 46 (3): 167–192. doi: 10.1016/j.yrtph.2006.06.002
  • 17. Patil SM, Patil MB, Sapkale GN. Antimicrobial activity of Glycyrrhiza glabra Linn. Roots. International Journal of Chemical Sciences 2009; 7 (1): 585–591. doi: 10.11648/j.plant.20170504.12
  • 18. Satomi Y, Nishino H, Shibata S. Glycyrrhetinic acid and related compounds induce G1 arrest and apoptosis in human hepatocellular carcinoma HepG2. Anticancer Research 2005; (6): 4043–4047.
  • 19. Vaya J, Belinky PA, Aviram M. Structural aspects of the inhibitory effect of glabridin on LDL oxidation. Free Radical Biology and Medicine 1998; 24: 1419–1429. doi: 10.1016/s0891-5849(98)00006-9
  • 20. Hossain MS, Hossain MA, Islam R, Alam AH, Zahan K et al. Antimicrobial and cytotoxic activities of 2-aminobenzoic acid and 2-aminophenol and their coordination complexes with Magnesium (Mg-II). Pakistan Journal of Biological Sciences 2004; 7: 25–27. doi: 10.4103/0253-7613.40489
  • 21. Kakegawa H, Matsumoto H, Satoh T. Inhibitory effects of some natural products on the activation of hyaluronidase and their anti-allergic actions. Chemical and Pharmaceutical Bulletin 1992; 40: 1439–1442. doi: 10.1248/cpb.40.1439
  • 22. Fujisawa Y, Sakamoto M, Matsushita M, Fujita T, Nishioka K. Glycyrrhizin inhibits thelytic pathway of complement-possible mechanism of its anti-inflammatory effect on liver cells in viral hepatitis. Microbiology and Immunology 2000; 44: 799-80. doi: 10.1055/s-0035-1557893
  • 23. Cinatl J, Morgenstern B, Bauer G, Chandra P, Rabenau H et al. Glycyrrhizin, an active component of liquorice roots, and replication of SARSassociated coronavirus. Lancet 2003; 361: 2045–2046. doi: 10.1016/s0140-6736(03)13615-x
  • 24. Srivastav VK, Tiwari M, Zhang X, Yao J. Synthesis and Antiretroviral Activity of 6-Acetyl-coumarin Derivatives against HIV-1 Infection. Indian Journal of Pharmaceutical Sciences 2018; 108-117. doi: 10.4172/pharmaceutical-sciences.1000335
  • 25. Gajanan W, Rahul A , Neha K , Ravi R , Naveen KK et al. Synthesis of novel a-pyranochalcones and pyrazoline derivatives as Plasmodium falciparum growth inhibitors. Bioorganic & Medicinal Chemistry Letters 2010; 20: 4675–4678. doi. 10.1016/j.bmcl.2010.05.069
  • 26. Hanwell MD, Curtis DE, Lonie DC, Vandermeersch T, Zurek E et al. Avogadro: An advanced semantic chemical editor, visualization and analysis platform. Australian Journal of Chemistry 2012; 4: 17. doi: 10.1186/1758-2946-4-17
  • 27.Thomas AH, MMFFVI- MMFF94s Option for Energy Minimization Studies. Journal of Computational Chemistry 1999; 20 (7): 720-729. doi: 10.1002/(SICI)1096-987X(199905)20: 7<720::AID-JCC7>3.0.CO;2-X
  • 28. Schmidt MW, Baldridge KK, Boatz JA, Elbert ST, Gordon MS et al. General atomic and molecular electronic structure system. Journal of Computational Chemistry 1993; 14: 1347-1363. doi: 10.1002/jcc.540141112
  • 29. Gordon MS, Schmidt MW. Advances in electronic structure theory: GAMESS a decade later. Theory and Applications of Computational Chemistry 2005; 1167-1189. doi: 10.1016/b978-044451719-7/50084-6
  • 30. Dunning TH. Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen. The Journal of Chemical Physics 1989; 90: 1007-1023. doi: 10.1063/1.456153
  • 31. Kohn W, Becke AD, Parr RG. Density Functional Theory of Electronic Structure. The Journal of Physical Chemistry A 1996; 100 (31) : 12974–12980. doi: 10.1021/jp960669l
  • 32. Kim K, Jordan KD. Comparison of Density Functional and MP2 Calculations on the Water Monomer and Dimer. The Journal of Physical Chemistry A 1994; 98 (40): 10089–10094. doi: 10.1021/j100091Å 24
  • 33. Stephens PJ, Devlin FJ, Chabalowski CF, Frisch MJ. Ab ınitio calculation of vibrational absorption and circular dichroism spectra using density functional force fields. The Journal of Physical Chemistry A 1994 ; 98 (45): 11623-11627. doi: 10.1021/j100096Å01
  • 34. Stevens WH, Basch H, Krauss M, Jasien P. An effective fragment method for modeling solvent effects in quantummechanical calculations. The Journal of Chemical Physics 1996; 105: 1968. doi: 10.1063/1.472045
  • 35. Cundari TR, Stevens WJ. Effective core potential methods for the lanthanides. The Journal of Physical Chemistry 1993; 98: 5555. doi: 10.1063/1.464902
  • 36. Hay PJ, Wadt WR, Ab initio effective core potentials for molecular calculations. Potentials for the transition metal atoms Sc to Hg. The Journal of Physical Chemistry 1985; 82: 270. doi: 10.1063/1.448799
  • 37. Tokura S, Sato T, Tsuneda T, Nakajima T, Hirao KJ. A dual-level state-specific time-dependent density-functional theory. Journal of Computational Chemistry 2008; 29 (8): 1187-97. doi: 10.1002/jcc.20871
  • 38. Mahito C, Takao T, Kimihiko H. Excited state geometry optimizations by analytical energy gradient of long-range corrected time-dependent density functional theory. The Journal of Chemical Physics 2006; 124: 144106. doi: 10.1063/1.2186995.
  • 39. Becke AD. Development and assessment of new exchange-correlation functionals Journal of Chemical Physics 1998; 109: 6264. doi: 10.1063/1.477267
  • 40. Becke AD. Density-functional exchange-energy approximation with correct asymptotic behavior. Physical Review A 1998; 38: 3098. doi: 10.1103/PhysRevA.38.3098
  • 41. Glendening ED, Landis CR, Weinhold F. Natural bond orbital methods. Wiley Interdisciplinary Reviews: Computational Molecular Science 2012; 2: 1-42. doi: 10.1002/wcms.51
  • 42. Bode BM, Gordon MS.MacMolPlt: a graphical user interface for GAMESS. Journal of Molecular Graphics and Modelling 1998; 16 (3): 133-8. doi: 10.1016/s1093-3263(99) 00002-9
  • 43. Bharadwaj KD, Ramaswamy M, Tiruvenkata RS, Rdhika S. Liqcoumarin- a novel coumarin from Glycyrrhzza glabra. Phytochemistry 1976; 15: 1182-1183.
Turkish Journal of Chemistry-Cover
  • ISSN: 1300-0527
  • Yayın Aralığı: Yılda 6 Sayı
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