Türkiye Malcolmia, Strigosella, Zuvanda ve diğer yakın cinsler (Brassicaceae) arasındaki filogenetik akrabalık ilişkilerinin inter-simple sequence repeat çoğaltımı ile analizi

Malcolmia W.T.Aiton cinsi taksonomik olarak problemli bir cinstir ve son yıllarda yapılan çalışmalarla bazı türleri Strigosella Boiss. ve Zuvanda Dvorák cinslerine aktarılmıştır. Bu cinsin Türkiye’de üç türü doğal olarak yetişmektedir. Son yıllarda moleküler verilere göre yapılmış olan revizyon çalışmaları taksonların filogenetik ilişkilerini ve sistematik pozisyonlarını daha güvenilir ve net bir biçimde ortaya koymaktadır. Böylece fenotipik analizlerin aksine çevre şartlarından etkilenmeyen DNA tabanlı moleküler genetik analizlerle taksonomik problemi olan türlerin sorunları çözülmeye başlanmıştır. Bu çalışmada ISSR primerleri kullanılarak DNA’ların çoğaltılması yapılmış ve taksonlar arasındaki filogenetik ilişkilerin dendrogramı NTSYSpc 2.1 programı kullanılarak elde edilmiştir. Malcolmia cinsi içi ve diğer yakın cinsler arasındaki filogenetik akrabalıklar tespit edilmeye çalışılmıştır. Malcolmia chia ve M. flexuosa arasında çok yakın bir akrabalık ilişkisi tespit edilmiştir. Strigosella ve Zuvanda türlerinin bu iki türden filogenetik olarak ayrı olduğu belirlenmiştir. Malcolmia, Strigosella, Zuvanda, Leptaleum DC., Neotorularia Hedge & J.Léonard ve Sisymbrium L. cinsleri arasındaki filogenetik ilişkiler incelenmiştir. Malcolmia, Strigosella, Zuvanda, Leptaleum, Neotorularia ve Sisymbrium cinsleri filogenetik olarak dendrogramda ayrı kladlarda yer almıştır. 

Phylogenetic relationships between Malcolmia, Strigosella, Zuvanda, and some closely related genera (Brassicaceae) from Turkey revealed by inter-simple sequence repeat amplification

The genus Malcolmia W.T.Aiton is taxonomically problematic, and some of its species have recently been transferred to the genera Strigosella Boiss. and Zuvanda Dvorák. Three species of this genus are native to Turkey. The revision studies based on molecular data, which were collected in the past few years, display the phylogenetic relations and the systematic positions of the taxa more reliably and apparently. Thus taxonomic problems of species are resolved through DNA-based molecular analyses, which are not affected by environmental factors compared to phenotypic studies. In the present study, the amplifications of the DNA fragments were carried out using ISSR primers, and the phylogenetic relationship among the taxa was revealed through a dendrogram produced as the outcome of the NTSYSpc 2.1 software. The infrageneric and intergeneric phylogenetic relationships among Malcolmia and other related genera are determined. A very close relationship was determined between Malcolmia chia and M. flexuosa. Strigosella and Zuvanda species were determined to be phylogenetically different from these 2 species. The phylogenetic relationships among the Malcolmia, Strigosella, Zuvanda, Leptaleum DC., Neotorularia Hedge & J.Léonard, and Sisymbrium L. taxa were investigated. The phylogenetic separation of Malcolmia, Strigosella, Zuvanda Leptaleum, Neotorularia, and Sisymbrium genera and their specimens constituted separate clades on the dendrogram.

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  • Akhani H (2003). Notes on the flora of Iran: 4. Two new records and synopsis of the new data on Iranian Cruciferae since Flora Iranica. Candollea 58: 369-385.
  • Al-Shehbaz IA, Beilstein MA & Kellogg EA (2006). Systematics and phylogeny of the Brassicaceae (Cruciferae): an overview. Plant Syst Evol 259: 89-120.
  • Al-Shehbaz IA & Warwick SI (2007). Two new tribes (Dontostemoneae and Malcolmieae) in the Brassicaceae (Cruciferae). Harv Paper Bot 12: pp. 429-433.
  • Al-Shehbaz IA, Mutlu B & Dönmez AA (2007). The Brassicaceae (Cruciferae) of Turkey, updated. Turk J Bot 31: 327-336.
  • APG (Angiosperm Phylogeny Group) (2003). An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II. Bot J Linn Soc 141: 399- 436.
  • Ball PW (1967). Malcolmia R.Br. In: Tutin TG, Heywood VH, Burges NA, Valentine DH, Walters SM, Webb DA (eds.) Flora Europaea. Vol. 1, pp. 277-278. Cambridge: Cambridge Univ Press.
  • Beilstein MA, Al-Shehbaz IA & Kellogg EA (2006). Brassicaceae phylogeny and trichome evolution. Am J Bot 93: 607-619.
  • Beilstein MA, Al-Shehbaz IA, Mathews S & Kellogg EA (2008). Brassicaceae phylogeny inferred from phytochrome A and NDHF sequence data: tribes and trichomes revisited. Am J Bot 95: 1307-1327.
  • Couvreur TLP, Franzke A, Al-Shehbaz IA, Bakker FT, Koch MA & Mummenhoff K (2010). Molecular phylogenetics, temporal diversification and principles of evolution in the mustard family (Brassicaceae). Mol Biol Evol 27: 55-71.
  • Cullen J (1965). Malcolmia R.Br. In: Davis PH (ed). Flora of Turkey and the East Aegean Islands. 1: 460-462. Edinburgh: Edinburgh Univ Press.
  • Dogan B, Duran A & Hakki EE (2007). Phylogenetic analysis of Jurinea (Asteraceae) species from Turkey based on ISSR amplification. Ann Bot Fennici 44: 353-358.
  • Domenyuk VP, Verbitskaya TG, Belousov AA & Sivolap YM (2002). Marker analysis of quantitative traits in maize by ISSR-PCR. Russian J Genet 38: 1161-1168. Translated from Genetika 38: 1370-1378.
  • Galvan MZ, Bornet B, Balatti PA & Branchard M (2003). Inter simple sequence repeat (ISSR) markers as a tool for the assessment of both genetic diversity and gene pool origin in common bean (Phaseolus vulgaris L.). Euphytica 132: 297-301.
  • German DA, Friesen N, Neuffer B, Al-Shehbaz IA & Hurka H (2009). Contribution to ITS phylogeny of the Brassicaceae, with a special reference to some Asian taxa. Plant Syst Evol 283: 33-56.
  • Hakkı EE, Dogan B, Duran A, Martin E & Dinc M (2010). Phylogenetic relationship analysis of Genista L. (Fabaceae) species from Turkey as revealed by inter-simple sequence repeat amplification. Afr J Biotechnol 9: 2627-2632.
  • Komarov VL (1970). Malcolmia R.Br. In: Komarov VL (ed.). Flora of the URSS. Vol. 8 (Translated from Russian): pp. 203-212, Jerusalem: Israel Program for Scientific Translation.
  • Khosravi AR, Mohsenzadeh S & Mummenhoff K (2009). Phylogenetic relationships of Old World Brassicaceae from Iran based on nuclear ribosomal DNA sequences. Biochem Syst Ecol 37: 106-115.
  • Koch M (2003). Molecular phylogenetics, evolution and population biology in the Brassicaceae. Sharma AK & Sharma A (eds.), Plant Genome: Biodiversity and Evolution, Vol. 1, pp. 1-35. Phanerogams. Science Publishers, Enfield, New Hampshire.
  • Koch M, Al-Shehbaz IA & Mummenhoff K (2003). Molecular systematics, evolution, and population biology in the mustard family (Brassicaceae). Ann Mo Bot Gard 90: 151-171.
  • Meikle RD (1977-1985). Flora of Cyprus. Vols. 1-2, Bentham-Moxon Trust. Royal Botanic Gardens, Kew.
  • Mitchell-Olds T, Al-Shehbaz I.A, Koch M & Sharbel TF (2005). Crucifer evolution in the post-genomic era. In: Henry RJ (ed.), Plant Diversity and Evolution: Genotypic and Phenotypic Variation in Higher Plants. CAB International, pp. 119-137.
  • Özgökçe F & Ünal M (2007). A new record for Turkey: Malcolmia exacoides (DC.) Spreng. (Brassicaceae). Turk J Bot 31: 345-347.
  • Prevost A & Wilkinson M J (1999). A new system of comparing PCR primers applied to ISSR fingerprinting of potato accessions. Theor Appl Genet 98: 107-112.
  • Rechinger KH (1968). Malcolmia R.Br. In: Rechinger KH (ed.). Flora Iranica, Vol. 57, pp. 258-266, Graz, Austria: Akademische Druck-u Verlagsanstalt.
  • Rohlf FJ (1992). NTSYS-pc: Numerical taxonomy and multivariate analysis system, version 2.0-State Uni. New York, Stony Brook, NY.
  • Sambrook J, Fritsch EF & Maniatis T (1989). Molecular cloning: a laboratory manual, 2nd edn. Vols. 1-3, Cold Spring Harbor Laboratory Press, Cold Spring Habor, New York.
  • Townsend CC (1980). Malcolmia R.Br. In: Townsend CC, Guest E (eds.) Flora of Iraq. Vol. 4, pp. 1028-1031. Baghdad: Ministry of Agriculture, Republic of Iraq.
  • Ünal M & Özgökçe F (2008). A new record for Turkey: Malcolmia intermedia C.A.Mey. (Brassicaceae). Turk J Bot 32: 415-417.
  • Warwick SI, Sauder C, Al-Shehbaz IA & Jacquemoud F (2007). Phylogenetic relationships in the tribes Anchonieae, Chorisporeae, Euclidieae, and Hesperideae (Brassicaceae) based on nuclear ribosomal ITS DNA sequences. Ann Mo Bot Gard 94: 56-78.
  • Warwick SI, Mummenhoff K, Sauder CA, Koch MA & Al-Shehbaz IA (2010). Closing the gaps: phylogenetic relationships in the Brassicaceae based on DNA sequence data of nuclear ribosomal ITS region. Plant Syst Evol 285: 209-232.
  • Williams JGK, Kubelik AR & Livak KJ (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18: 6531-6535.
  • Zietkiewicz E, Rafalski A & Labuda D (1994). Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20: 176-183.
  • Zohary M (1966). Malcolmia R.Br. In: Zohary M (ed). Flora Palaestina, Vol. 1 (Text), pp. 264-266. Jerusalem: Academic Press, Israel.
Turkish Journal of Botany-Cover
  • ISSN: 1300-008X
  • Yayın Aralığı: Yılda 6 Sayı
  • Yayıncı: TÜBİTAK