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• ReferencesAltschul SF, Madden TL, Schaffer A, Zhang J, Zhang Z, Miller W, Lipman DJ (1997). Gapped BLAST and PSI-BLAST: a new generation of protein data base search programs. Nucleic Acids Res 25: 3389-3402.Arima K, Imanaka H, Kousaka M, Fukuta A, Tamura G (1964). Pyrrolnitrin, a new antibiotic substance, produced by Pseudomonas. Agr Biol Chem Tokyo 28: 575-576.Arima K, Imanaka H, Kousaka M, Fukuta A, Tamura G (1965). Studies on pyrrolnitrin, a new antibiotic. I. Isolation and properties of pyrrolnitrin. J Antibiot 18: 201-204.Buchan DW, Minneci F, Nugent TC, Bryson K, Jones DT (2013). Scalable web services for the PSIPRED Protein Analysis Workbench. Nucleic Acids Res 41: W349-357.Chang CJ, Floss HG, Hook DJ, Mabe JA, Manni PE, Martin LL, Schroder K, Shieh TL (1981). The biosynthesis of the antibiotic pyrrolnitrin by Pseudomonas aureofaciens. J Antibiot 34: 555-566.Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam SA, McGarrell DM, Marsh T, Garrity GM et al. (2009). The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-145.de Souza JT, Raaijmakers JM (2003). Polymorphisms within the prnDand pltC genes from pyrrolnitrin and pyoluteorin-producing Pseudomonas and Burkholderia spp. FEMS Microbiol Ecol 43: 21-34.Dowling DN, O’Gara F (1994). Metabolites of Pseudomonas involved in the biocontrol of plant disease. Trends Biotechnol 12: 133-141.Edwards U, Rogall T, Blöcker H, Emde M, Böttger EC (1989). Isolation and direct complete nucleotide determination of entire genes. Characterisation of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17: 7843-7853.Eisenberg D, Luthy R, Bowie JU (1997). VERIFY3D: assessment of protein models with three dimensional profiles. Method Enzymol 277: 396-404.Filiz E, Tombuloğlu H (2015). Genome-wide distribution of superoxide dismutase (SOD) gene families in Sorghum bicolor. Turk J Biol 39: 49-59.Gasteiger E, Hoogland C, Gattiker A, Duvaud S, Wilkins MR, Appel RD, Bairoch A (2005). Protein identification and analysis tools on the ExPASy server. In: Walker JM, editor. The Proteomics Protocols Handbook. New York, NY, USA: Humana Press, pp. 571-607.Gehmann K, Neyfeler R, Leadbeater A, Nevill D, Sozzi D (1990). CGA173506: A new phenylpyrrole fungicide for broad-spectrum disease control. In: Proceedings of the Brighton Crop Protection Conference: Pests Diseases, pp. 399-406.Gill SC, Von Hippel PH (1989). Calculation of protein extinction coefficients from amino acid sequence data. Anal Biochem 182: 319-328.Glasgow J, Kuo T, Davies J (2006). Protein structure from contact maps: a case-based reasoning approach. Inform Syst Front 8: 29-36.Gundampati RK, Chikati R, Kumari M, Sharma A, Pratyush DD, Jagannadham MV, Kumar CS, Debnath Das M (2012). Protein-protein docking on molecular models of Aspergillus niger RNase and human actin: novel target for anticancer therapeutics. J Mol Model 18: 653-662.Guruprasad K, Reddy VP, Pandit MW (1991). Correlation between stability of a protein and its dipeptide composition: a novel approach for predicting in vivo stability of a protein from its primary sequence. Protein Eng 4: 155-161.Hamill RL, Elander RP, Mabe JA, Gorman M (1967). Metabolism of tryptophans by Pseudomonas aureofaciens. V. Conversion of tryptophan to pyrrolnitrin. Antimicrob Agents Ch 7: 388-396.Hamill RL, Elander RP, Mabe JA, Gorman M (1970). Metabolism of tryptophan by Pseudomonas aureofaciens. III. Production of substituted pyrrolnitrins from tryptophan analogues. Appl Microbiol 19: 721-725.Hammer PE, Burd W, Hill DS, Ligon JM, van Pée KH (1999). Conservation of the pyrrolnitrin biosynthetic gene cluster among six pyrrolnitrin producing strains. FEMS Microbiol Ecol 180: 39-44.Hammer PE, Hill DS, Lam ST, van Pée KH, Ligon JM (1997). Four genes from Pseudomonas fluorescens that encode the biosynthesis of pyrrolnitrin. Appl Environ Microb 63: 2147-2154.Ikai AJ (1980). Thermostability and aliphatic index of globular proteins. J Biochem 88: 1895-1898.Koehl P, Levitt M (1999). Structure-based conformational preferences of amino acids. P Natl Acad Sci USA 96: 12524-12529.Kyte J, Doolittle RF (1982). A simple method for displaying the hydropathic character of a protein. J Mol Biol 157: 105-132.Laskowski RA, MacArthur MW, Moss DS, Thornton JM (1993). PROCHECK-a program to check the stereochemical quality of protein structures. J Appl Crystallogr 26: 283-291.Laurie A, Jackson R (2005). Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites. Bioinformatics 21: 1908-1916.Lemanceau P, Maurhofer M, Defago G (2006). Contribution of studies on suppressive soils to the identification of bacterial biocontrol agents and to the knowledge of their modes of action. In: Gnanamanickam SS, editor. Plant-Associated Bacteria. Dordrecht, the Netherlands: Springer, pp. 231-267.Morris AL, MacArthur MW, Hutchinson EG, Thornton JM (1992). Stereochemical quality of protein structure coordinates. Proteins 12: 345-364.Nevill D, Nyfeler R, Sozzi D (1988). CGA142705: a novel fungicide for seed treatment. In: Proceedings of the Brighton Crop Protection Conference: Pests Diseases, pp. 65-72.Pace CN, Vajdos F, Fee L, Grimsley G, Grey T (1995). How to measure and predict the molar absorption coefficient of a protein. Protein Sci 4: 2411-2423. Qin Z, Buehler MJ (2010). Molecular dynamics simulation of the -helix to -sheet transition in coiled protein filaments: evidence for a critical filament length scale. Phys Rev Lett 104: 198304.Raaijmakers J, Weller DM, Thomashow LS (1997). Frequency of antibiotic producing Pseudomonas spp. in natural environments. Appl Environ Microb 63: 881-887.Raaijmakers JM, Weller DM (1998). Natural plant protection by 2,4-diacetylphloroglucinol-producing Pseudomonas spp. in take-all decline soils. Mol Plant Microbe In 11: 144-152.Ramachandran GN, Ramakrishnan C, Sasisekharan V (1963). Stereochemistry of polypeptide chain configurations. J Mol Biol 7: 95-99.Sambrook J, Fritsch EF, Maniatis T (1989). Molecular Cloning: A Laboratory Manual. 2nd ed. Cold Spring Harbor, NY, USA: Cold Spring Harbor Laboratory Press.Sekhar PN, Kishor PB, Reddy LA, Mondal P, Dash AK, Kar M, Mohanty S, Sabat SC. (2006). In silico modelling and hydrogen peroxide binding study of rice catalase. In Silico Biol 6: 435-447.Singh RN, Kaushik R, Arora DK, Saxena AK (2013).Prevalence of opportunist pathogens in thermal springs of devotion. J Appl Sci Environ Sanit8: 195-203.Singh RP, Singh RN, Srivastava AK, Kumar S, Dubey RC, Arora DK (2011). Structural analysis and 3D-modeling of FUR protein from Bradyrhizobium japonicum.J Appl Sci Environ Sanit 6: 357-366.Singh RP, Singh RN, Srivastava M, Srivastava AK, Kumar S, Dubey RC, Sharma AK (2012).Structure prediction and analysis of MxaF from obligate, facultative and restricted facultative methylobacterium. Bioinformation 8: 1042-1046.Suyama M, Matsuo Y, Nishikawa K (1997). Comparison of protein structures using 3D profile alignment. J Mol Evol 44 (Suppl. 1): S163-173.Tawara S, Matsumoto S, Hirose T, Matsumoto Y, Nakamoto S, Mitsuno M, Kamimura T (1989). In vitro antifungal synergism between pyrrolnitrin and clotrimazole. J Med Mycol 30: 202-210.Thomashow LS, Weller DM (1996). Current concepts in the use of introduced bacteria for biological disease control: mechanisms and antifungal metabolites. In: Stacey G, Keen NT, editors. Plant-Microbe Interactions. Dordrecht, the Netherlands: Springer, pp. 187-235.Trivedi MV, Laurence JS, Siahaan TJ (2009). The role of thiols and disulfides in protein chemical and physical stability. Curr Protein Pept Sc 10: 614-625.Umio S, Kamimura T, Kamishita T, Mine Y (1986). Antifungal composition employing pyrrolnitrin in combination with an imidazole compound. U.S. Patent 4: 636-520.van Pee KH, Salcher O, Lingens F (1980). Formation of pyrrolnitrin and 3-(29-amino-39-chlorophenyl) pyrrole from 7-chlorotryptophan. Angew Chem Int Ed Engl 19: 828.Wedemeyer WJ (2000). Disulfide bonds and protein folding. Biochemistry-US 39: 703.Weller DM, Raaijmakers JM, Gardener BBM, Thomashow LS (2002). Microbial populations responsible for specific soil suppressiveness to plant pathogens. Annu Rev Phytopathol 40: 309-384.Wu S, Skolnick J, Zhang Y (2007). Ab-initio modeling of small proteins by iterative TASSER simulations. BMC Biol 5: 17.Zhou P, Mocek U, Seisel B, Floss HG (1992). Biosynthesis of pyrrolnitrin. Incorporation of 13C 15N double-labelled D- and L-tryptophan. J Basic Microb 32: 209-214.