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• Adlat S, Sah RK, Hayel F, Chen Y, Bah FB et al. (2020). Global transcriptome study of Dip2B-deficient mouse embryonic lung fibroblast reveals its important roles in cell proliferation and development. Computational and Structural Biotechnology Journal 18: 2381-2390.
• Alvarez E, Zhou W, Witta SE, Freed CR (2005). Characterization of the Bex gene family in humans, mice, and rats. Gene 357: 18- 28.
• Ashburner M, Ball CA, Blake JA, Botstein D, Butler H et al. (2000). Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature Genetics 25: 25-29.
• Audic S, Claverie JM (1997). The significance of digital gene expression profiles. Genome Research 7: 986-995.
• Bisgaard H, Bønnelykke K, Sleiman PM, Brasholt M, Chawes B et al. (2009). Chromosome 17q21 gene variants are associated with asthma and exacerbations but not atopy in early childhood. American Journal Respiratory and Critical Care Medicine 179: 179-185.
• Brown AL, Kay GF (1999). Bex1, a gene with increased expression in parthenogenetic embryos, is a member of a novel gene family on the mouse X chromosome. Human Molecular Genetics 8: 611-619.
• Cartagena CM, Schmid KE, Phillips KL, Tortella FC, Dave JR (2013). Changes in apoptotic mechanisms following penetrating ballistic-like brain injury. Journal of Molecular Neuroscience 49: 301-311.
• Cock PJ, Fields CJ, Goto N, Heuer ML, Rice PM (2010). The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Research 38: 1767-1771.
• Cong L, Ran FA, Cox D, Lin S, Barretto R et al. (2013). Multiplex genome engineering using CRISPR/Cas systems. Science 339: 819-823.
• Costa V, Angelini C, De Feis I, Ciccodicola A (2010). Uncovering the complexity of transcriptomes with RNA-Seq. Journal of Biomedicine and Biotechnology 2010: 853916.
• Fernandez EM, Diaz-Ceso MD, Vilar M (2015). Brain expressed and X-linked (Bex) proteins are intrinsically disordered proteins (IDPs) and form new signaling hubs. PLoS One 10: e0117206.
• Foltz G, Ryu GY, Yoon JG, Nelson T, Fahey J et al. (2006). Genomewide analysis of epigenetic silencing identifies BEX1 and BEX2 as candidate tumor suppressor genes in malignant glioma. Cancer Research 66: 6665-6674.
• Han C, Liu H, Liu J, Yin K, Xie Y et al. (2005). Human Bex2 interacts with LMO2 and regulates the transcriptional activity of a novel DNA-binding complex. Nucleic Acids Research 33: 6555-6565.
• Ito K, Yamazaki S, Yamamoto R, Tajima Y, Yanagida A et al. (2014). Gene targeting study reveals unexpected expression of brainexpressed X-linked 2 in endocrine and tissue stem/progenitor cells in mice. Journal of Biological Chemistry 289: 29892- 29911.
• Kanehisa M, Goto S (2000). KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Research 28: 27-30.
• Kazi JU, Kabir NN, Ronnstrand L (2015). Brain-Expressed X-linked (BEX) proteins in human cancers. Biochimica et Biophysica Acta 1856: 226-233.
• Kim D, Langmead B, Salzberg SL (2015). HISAT: a fast spliced aligner with low memory requirements. Nature Methods 12: 357-360.
• Kim SD, Kang SA, Kim YW, Yu HS, Cho KS et al. (2020). Screening and Functional Pathway Analysis of Pulmonary Genes Associated with Suppression of Allergic Airway Inflammation by Adipose Stem Cell-Derived Extracellular Vesicles. Stem Cells International 2020: 5684250.
• Kumar D, Bansal G, Narang A, Basak T, Abbas T et al. (2016). Integrating transcriptome and proteome profiling: Strategies and applications. Proteomics 16: 2533-2544.
• Langmead B, Salzberg SL (2012). Fast gapped-read alignment with Bowtie 2. Nature Methods 9:357-359
• Lefrançais E, Ortiz-Muñoz G, Caudrillier A, Mallavia B, Liu F et al. (2017). The lung is a site of platelet biogenesis and a reservoir for haematopoietic progenitors. Nature 544: 105-109.
• Li B, Dewey CN (2011). RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12: 323.
• Meng Q, Zhi T, Chao Y, Nie E, Xu X et al. (2014). Bex2 controls proliferation of human glioblastoma cells through NF-κB signaling pathway. Journal of Molecular Neuroscience 53: 262- 270.
• Naderi A (2019). Molecular functions of brain expressed X-linked 2 (BEX2) in malignancies. Experimental Cell Research 376: 221-226.
• Naderi A, Teschendorff AE, Beigel J, Cariati M, Ellis IO et al. (2007). BEX2 is overexpressed in a subset of primary breast cancers and mediates nerve growth factor/nuclear factor-kappaB inhibition of apoptosis in breast cancer cell lines. Cancer Research 67:6725-6736
• Perhal A, Wolf S, Jamous YF, Langer A, Abd Alla J et al. (2019). Increased Reactive Oxygen Species Generation Contributes to the Atherogenic Activity of the B2 Bradykinin Receptor. Frontiers in Medicine (Lausanne) 6: 32.
• Quentmeier H, Tonelli R, Geffers R, Pession A, Uphoff CC et al. (2005). Expression of BEX1 in acute myeloid leukemia with MLL rearrangements. Leukemia 19: 1488-1489.
• Ran FA, Hsu PD, Wright J, Agarwala V, Scott DA et al. (2013). Genome engineering using the CRISPR-Cas9 system. Nature Protocols 8: 2281-2308.
• Rohrs S, Dirks WG, Meyer C, Marschalek R, Scherr M et al. (2009). Hypomethylation and expression of BEX2, IGSF4 and TIMP3 indicative of MLL translocations in acute myeloid leukemia. Molecular Cancer 8: 86.
• Sah RK, Ma J, Bah FB, Xing Z, Adlat S et al. (2020). Targeted Disruption of Mouse Dip2B Leads to Abnormal Lung Development and Prenatal Lethality. International Journal Molecular Sciences 21: 8223.
• Tan Y, Hu Y, Xiao Q, Tang Y, Chen H et al. (2020). Silencing of brain-expressed X-linked 2 (BEX2) promotes colorectal cancer metastasis through the Hedgehog signaling pathway. International Journal of Biological Sciences 16: 228-238.
• Trapnell C, Roberts A, Goff L, Pertea G, Kim D et al. (2012). Differential gene and transcript expression analysis of RNAseq experiments with TopHat and Cufflinks. Nature Protocols 7: 562-578.
• Wang H, FitzPatrick M, Wilson NJ, Anthony D, Reading PC et al. (2019). CSF3R/CD114 mediates infection-dependent transition to severe asthma. Journal of Allergy and Clinical Immunology 143: 785-788 e786.
• Wang H, Yang H, Shivalila CS, Dawlaty MM, Cheng AW et al. (2013). One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering. Cell 153: 910-918.
• Yang QS, Xia F, Gu SH, Yuan HL, Chen JZ et al. (2002). Cloning and expression pattern of a spermatogenesis-related gene, BEX1, mapped to chromosome Xq22. Biochemical Genetics 40: 1-12.
• Yee M, Cohen ED, Domm W, Porter GA, Jr McDavid AN et al. (2018). Neonatal hyperoxia depletes pulmonary vein cardiomyocytes in adult mice via mitochondrial oxidation. American Journal Physiology-Lung Cellular and Molecular Physiol 314: L846-L859.