Precipitation and characterization of CaCO3 of Bacillus amyloliquefaciens U17 strain producing urease and carbonic anhydrase

In the present study, the properties of calcium carbonate mineralization and urease and carbonic anhydrase activities of Bacillus amyloliquefaciens U17 isolated from calcareous soil of Denizli (Turkey) were analyzed. CaCO3 was produced in all growth phases. Strain U17 showed 0.615 ± 0.092 μmol/min/mg urease enzyme activity in calcium mineralization medium and 1.315 ± 0.021 μmol/min/mg urease enzyme activity in Luria-Bertani medium supplemented with urea, whereas it showed 36.03 ± 5.48 nmol/min/ mg carbonic anhydrase enzyme activity in CaCO3 precipitation medium and 28.82 ± 3.31 nmol/min/mg carbonic anhydrase enzyme activity in Luria-Bertani medium supplemented with urea. The urease B protein expression level of strain U17 was detected by western blotting for the first time. The produced CaCO3 crystals were analyzed by X-ray diffraction, X-ray fluorescence, confocal RAMAN spectrophotometer, scanning electron microscopy, and electron probe microanalyzer for the evaluation of their morphological and elemental properties. Rhombohedral vaterite and layered calcite crystals were clearly detected and verified by mineralogical analyses. All these results showed that strain U17 can be used in many engineering and geological applications due to its CaCO3 precipitation ability.

___

  • Achal V, Pan X (2014). Influence of calcium sources on microbially induced calcium carbonate precipitation by Bacillus sp. CR2. Applied Biochemistry and Biotechnology 173 (1): 307-317.
  • Akyol E, Bozkaya Ö, Dogan NM (2017). Strengthening sandy soils by microbial methods. Arabian Journal of Geosciences 10 (15): 1-8.
  • APHA (1989). Standard Methods for the Examination of Water and Wastewater, 17th Edition. Washington, DC, USA: American Public Health Association.
  • Arınç E, Arslan Ş, Bozcaarmutlu A, Adalı O (2007). Effects of diabetes on rabbit kidney and lung CYP2E1 and CYP2B4 expression and drug metabolism and potentiation of carcinogenic activity of N-nitrosodimethylamine in kidney and lung. Food and Chemical Toxicology 45 (1): 107-118.
  • Armstrong JM, Myers DV, Verpoorte JA, Edsall JT (1966). Purification and properties of human erythrocyte carbonic anhydrases. Journal of Biological Chemistry 241 (21): 5137- 5149.
  • Bai Y, Guo X, Li Y, Huang T (2017). Experimental and visual research on the microbial induced carbonate precipitation by Pseudomonas aeruginosa. AMB Express 7: 57. doi: 10.1186/ s13568-017-0358-5
  • Bergdale TE, Pinkelman RJ, Hughes SR, Zambelli B, Ciurli S et al. (2012). Engineered biosealant strains producing inorganic and organic biopolymers. Journal of Biotechnology 161: 181-189.
  • Benzerara K, Miot J, Morin G, Onanguema G, Skouri-Panet F et al. (2011). Significance, mechanisms and environmental implications of microbial biomineralization. Comptes Rendus Geoscience 343 (2): 160-167.
  • Christensen WB (1946). Urea decomposition as a means of differentiating Proteus and paracolon cultures from each other and from Salmonella and Shigella types. Journal of Bacteriology 52 (4): 461-466.
  • Daskalakis MI, Rigas F, Bakolas A, Magoulas A, Kotoulas G et al. (2015). Vaterite bio-precipitation induced by Bacillus pumilus isolated from a solutional cave in Paiania, Athens, Greece. International Biodeterioration & Biodegradation 99: 73-84.
  • Dhami NK, Reddy MS, Mukherjee A (2013). Bacillus megaterium mediated mineralization of calcium carbonate as biogenic surface treatment of green building materials. World Journal of Microbiology and Biotechnology 29: 2397-2406.
  • Dhami NK, Reddy MS, Mukherjee A (2014). Synergistic role of bacterial urease and carbonic anhydrase in carbonate mineralization. Applied Biochemistry and Biotechnology 172 (5): 2552-2561.
  • Ey PL, Ashman LK (1986). The use of alkaline phosphataseconjugated anti-immunoglobulin with immunoblots for determining the specificity of monoclonal antibodies to protein mixtures. Methods in Enzymology 121: 497-509.
  • Ferris FG, Stehmeier LG, Kantzas A, Mourits FM (1996). Bacteriogenic mineral plugging. Journal of Canadian Petroleum Technology 35 (8): 56-61.
  • Gebauer D, Gunawidjaja PN, Ko JY, Bacsik Z, Aziz B et al. (2010). Proto‐calcite and proto‐vaterite in amorphous calcium carbonates. Angewandte Chemie 122 (47): 9073-9075.
  • González-Muñoz MT, Rodriguez-Navarro C, MartínezRuiz F, Arias JM, Merroun ML et al. (2010). Bacterial biomineralization: new insights from Myxococcus-induced mineral precipitation. Geological Society of London Special Publications 336 (1): 31-50.
  • Gower LB (2008). Biomimetic model systems for investigating the amorphous precursor pathway and its role in biomineralization. Chemical Reviews 108 (11): 4551-4627.
  • Hammes F, Verstraete W (2002). Key roles of pH and calcium metabolism in microbial carbonate precipitation. Reviews in Environmental Science and Biotechnology 1 (1): 3-7.
  • Laemmli UK (1970). Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227 (5259): 680-685.
  • Lowry OH, Rosebrough NJ, Farr AL, Randall RJ (1951). Protein measurement with the Folin phenol reagent. Journal of Biological Chemistry 193 (1): 265-275.
  • Mudgil D, Baskar S, Baskar R, Paul D, Shouche YS (2018). Biomineralization potential of Bacillus subtilis, Rummeliibacillus stabekisii and Staphylococcus epidermidis strains in vitro isolated from Speleothems, Khasi Hill Caves, Meghalaya, India. Geomicrobiology Journal 35 (8): 675-694.
  • Navarro-García F, Casermeiro MÁ, Schimel JP (2012). When structure means conservation: effect of aggregate structure in controlling microbial responses to rewetting events. Soil Biology and Biochemistry 44 (1): 1-8.
  • Okwadha GDO, Li J (2010). Optimum conditions for microbial carbonate precipitation. Chemosphere 81: 1143-1148.
  • Okyay TO, Rodrigues DF (2014). Optimized carbonate microparticle production by Sporosarcina pasteurii using response surface methodology. Ecological Engineering 62: 168-174.
  • Otlewska A, Gutarowska B. (2016). Environmental parameters conditioning microbially induced mineralization under the experimental model conditions. Acta Biochimica Polonica 63 (2): 343-351.
  • Phillips AJ, Gerlach R, Lauchnor E, Mitchell AC, Cunningham AB et al. (2013). Engineered applications of ureolytic biomineralization: a review. Biofouling 29 (6): 715-733.
  • Priya JN, Kannan M (2017). Effect of carbonic anhydrase and urease on bacterial calcium carbonate precipitation. International Journal of Pharma and Bio Sciences 8 (3): 609-614.
  • Qian C, Wang R, Cheng L, Wang J (2010). Theory of microbial carbonate precipitation and its application in restoration of cement-based materials defects. Chinese Journal of Chemistry 28: 847-857.
  • Ramanan R, Krishnamurthi K, Vinayagamoorthy N, Rankumar KM, Sivanesan SD et al. (2009). Purification and characterization of a novel plant-type carbonic anhydrase from Bacillus subtilis. Biotechnology and Bioprocess Engineering 14: 32-37.
  • Rieger J, Frechen T, Cox G, Heckmann W, Schmidt C et al. (2007). Precursor structures in the crystallization/precipitation processes of CaCO3 and control of particle formation by polyelectrolytes. Faraday Discussions 136: 265-277.
  • Rodriguez-Navarro C, Jimenez-Lopez C, Rodriguez-Navarro A, Gonzalez-Muñoz MT, Rodriguez-Gallego M (2007). Bacterially mediated mineralization of vaterite. Geochimica et Cosmochimica Acta 71 (5): 1197-1213.
  • Sano Y, Shirai K, Takahata N, Hirata T, Sturchio NC (2005). Nano-SIMS analysis of Mg, Sr, Ba and U in natural calcium carbonate. Analytical Sciences 21: 1091-1097.
  • Seifan M, Samani AK, Berenjian A (2016). Induced calcium carbonate precipitation using Bacillus species. Applied Microbiology and Biotechnology 100 (23): 9895-9906.
  • Stocks-Fischer S, Galinat JK, Bang SS (1999). Microbiological precipitation of CaCO3 . Soil Biology and Biochemistry 31: 1563-1571.
  • Tirkolaei HK, Bilsel H (2017). Estimation on ureolysis-based microbially induced calcium carbonate precipitation progress for geotechnical applications. Marine Georesources & Geotechnology 35 (1): 34-41.
  • Vahabi A, Ramezanianpour AA, Sharafi H, Zahiri HS, Vali H et al. (2015). Calcium carbonate precipitation by strain Bacillus licheniformis AK01, newly isolated from loamy soil: a promising alternative for sealing cement‐based materials. Journal of Basic Microbiology 55 (1): 105-111.
  • Wang J, Becker U (2009). Structure and carbonate orientation of vaterite (CaCO3 ). American Mineralogist 94 (2-3): 380-386.
  • Wang L, Nilsen-Hamilton M (2013). Biomineralization proteins: from vertebrates to bacteria. Frontiers in Biology 2(8): 234-246.
  • Weatherburn MW (1967). Phenol-hypochlorite reaction for determination of ammonia. Analytical Chemistry 39 (8): 971- 974.
  • Whiffin V, van Paassen LA, Harkes MP (2007) Microbial carbonate precipitation as a soil improvement technique. Geomicrobiology Journal 24 (5): 417-423.
  • Zavarzin GA (2002) Microbial geochemical calcium cycle. Microbiology 71: 1-17.
Turkish Journal of Biology-Cover
  • ISSN: 1300-0152
  • Yayın Aralığı: Yılda 6 Sayı
  • Yayıncı: TÜBİTAK