Evaluation of Protein Profiles, Bioactivity, Allergenicity and Toxicity of Peptides Generated After in silico Digestion of Common Wheat and Einkorn Wheat

The beliefthat ancient wheat is more beneficial than common wheat has been growing trend in recent years among the consumers. The present study aims to compare bioactive peptide, allergen peptide and toxic peptide generation after gastrointestinal digestion of modern wheat (Triticum aestivum) and ancient wheat, einkorn (Triticum monococcum var. monococcum), using in silico tools. The primary sequences of both kinds of wheat were obtained from BIOPEP-UWM and UniProtKB/Swiss-Prot database. In silico digestion was applied using BIOPEP-UWM online tool. For the simulation of gastrointestinal digestion pepsin (pH 1.3) (EC 3.4.23.1), trypsin (EC 3.4.21.4), and chymotrypsin (EC 3.4.21.1) were selected and analyzed. Homology analysis was performed for each protein sequences using EMBOSS Needle program. Toxic and allergen peptides were predicted using ToxinPred online tool and Allergen FP v.1.0. The results showed that einkorn and common wheat proteins exhibited similar properties including high similarity rate (58.72-87.40%) indicating the percentage of matches between the two sequences and the identical bioactivities for peptides generated after digestion. Most of the bioactive peptides were dipeptides and the majority of them displayed more than one bioactivities including ACE inhibitory, DPP IV inhibitory or antioxidant activity, etc. Allergen peptides generated after in silico digestion were found to be similar for both kinds of wheat. In silico gastric digestion of einkorn and wheat caused toxic peptides production, but they were disappeared after in silico intestinal digestion. In conclusion, although there is a perception related to the Einkorn that is healthier than common wheat, in silico digestion of common wheat and einkorn did not support this perception.

___

Altschul SF, Wootton JC, Gertz EM, Agarwala R, Morgulis A, Schäffer AA, Yu YK. 2005. Protein database searches using compositionally adjusted substitution matrices. FEBS J 272:5101 –5109. doi:10.1111/j.1742-4658.2005.04945.x

Bleakley S, Hayes M, O’ Shea N, Gallagher E, Lafarga T. 2017. Predicted Release and Analysis of Novel ACE-I, Renin, and DPP-IV Inhibitory Peptides from Common Oat (Avena sativa) Protein Hydrolysates Using in Silico Analysis. Foods 6:108. doi:10.3390/foods6120108

Brandolini A, Hidalgo A. 2011. Einkorn (Triticum monococcum) Flour and BreadFlour and Breads and Their Fortification in Health and Disease Prevention. pp. 79–88. doi:10.1016/B978-0-12-380886-8.10008-X

Cavazos A, Gonzalez de Mejia E. 2013. Identification of Bioactive Peptides from Cereal Storage Proteins and Their Potential Role in Prevention ofChronic Diseases. Compr Rev Food Sci Food Saf 12:364–380. doi:10.1111/1541 - 4337.12017

Chojnacki S, Cowley A, Lee J, Foix A, Lopez R. 2017. Programmatic access to bioinformatics tools from EMBLEBI update: 2017. Nucleic Acids Res 45:W550–W553. doi:10.1093/nar/gkx273

Cooper R. 2015. Re-discovering ancient wheat varieties as functional foods. J Tradit Complement Med 5:138–143. doi:10.1016/j.jtcme.2015.02.004

Darewicz M, Borawska J, Pliszka M. 2016. Carp proteins as a source of bioactive peptides - An in Silico approach. Czech J Food Sci 34:111–117. doi:10.17221/300/2015-CJFS

Dimitrov I, Naneva L, Doytchinova I, Bangov I. 2014. AllergenFP: Allergenicity prediction by descriptor fingerprints. Bioinformatics 30:846–851. doi:10.1093 /bioinformatics/btt619

Garg S, Apostolopoulos V, Nurgali K, Mishra VK. 2018. Evaluation of in silico approach for prediction of presence of opioid peptides in wheat. J Funct Foods 41:34–40. doi:10.1016/j.jff.2017.12.022

Gebruers K, Dornez E, Boros D, Fraś A, Dynkowska W, Bedo Z, Rakszegi M, Delcour JA, Courtin CM. 2008. Variation in the content of dietary fiber and components thereof in wheats in the healthgrain diversity screen. J Agric Food Chem 56:9740–9749. doi:10.1021/jf800975w

Grausgruber H, Scheiblauer J, Schoenlechner R, Ruckenbauer P, Berghofer E. 2004. Variability in chemical composition and biologically active constituents of cerealsGenetic Variation for Plant Breeding. pp. 23–26.

Hatanaka T, Inoue Y, Arima J, Kumagai Y, Usuki H, Kawakami K, Kimura M, Mukaihara T. 2012. Production of dipeptidyl peptidase IV inhibitory peptides from defatted rice bran. Food Chem 134:797–802. doi:10.1016/j.foodchem.2012.02.183

Hidalgo A, Brandolini A. 2014. Nutritional properties of einkorn wheat ( Triticum monococcum L .). J Sci Food Agric. doi:10.1002/jsfa.6382

Kȩska P, Stadnik J. 2016. Porcine myofibrillar proteins as potential precursors of bioactive peptides-an in silico study. Food Funct 7:2878–2885. doi:10.1039/c5fo01631b

Lachman J, Hejtmánková K, Kotíková Z. 2013. Tocols and carotenoids of einkorn, emmer and spring wheat varieties: Selection for breeding and production. J Cereal Sci 57:207– 214. doi:10.1016/j.jcs.2012.05.011

Lafarga T, Hayes M. 2014. Bioactive peptides from meat muscle and by-products: generation, functionality and application as functional ingredients. Meat Sci 98:227–239. doi:10.1016/j.meatsci.2014.05.036

Li F, Liu W, Yamaki K, Liu Y, Fang Y, Li Z, Chen M, Wang C. 2016. Angiotensin I-Converting Enzyme Inhibitory Effect of Chinese Soypaste Along Fermentation and Ripening: Contribution of Early Soybean Protein Borne Peptides and Late Maillard Reaction Products. Int J Food Prop 19:2805– 2816. doi:10.1080/10942912.2015.1136941

Lùje H, Mùller B, Laustsen AM, Hansen Ê. 2003. Chemical Composition , Functional Properties and Sensory Profiling of Einkorn ( Triticum monococcum L .). J Cereal Sci 37:231– 240. doi:10.1006/jcrs.2002.0498

Minkiewicz P, Iwaniak A, Darewicz M. 2019. BIOPEP-UWM Database of Bioactive Peptides : Current Opportunities. Int J o f Mol Sci 20:1–23.

Needleman SB, Wunsch CD. 1970. A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins. J Mol Biol 48:443–453.

Ondetti MA, Cushman DW. 1982. Enzymes of the ReninAngiotensin System and their Inhibitors. Annu Rev Biochem 51:283–308. doi:10.1146/annurev.bi.51.070182.001435

Pooja K, Rani S, Prakash B. 2017. In silico approaches towards the exploration of rice bran proteins-derived angiotensin-Iconverting enzyme inhibitory peptides. Int J Food Prop 20:2178–2191. doi:10.1080/10942912.2017.1368552

Pratley RE. 2008. Overview of glucagon-like peptide-1 analogs and dipeptidyl peptidase-4 inhibitors for type 2 diabetes. Medscape J Med 10:171.

Rahaman T, Vasiljevic T, Ramchandran L. 2016. Effect of processing on conformational changes of food proteins related to allergenicity. Trends Food Sci Technol 49:24–34. doi:10.1016/j.tifs.2016.01.001

Shewry PR, Hey S. 2015. Do “ancient” wheat species differ from modern bread wheat in their contents of bioactive components? J Cereal Sci 65:236–243. doi:10.1016/j.jcs.2015.07.014

Šuligoj T, Gregorini A, Colomba M, Ellis HJ, Ciclitira PJ. 2013. Evaluation of the safety of ancient strains of wheat in coeliac disease reveals heterogeneous small intestinal T cell responses suggestive of coeliac toxicity. Clin Nutr 32:1043– 1049. doi:10.1016/j.clnu.2013.02.003

Szerszunowicz I, Nalecz D. 2018. The Use of UniProtKB / BIOPEP for the Analysis of Oat Globulin Physicochemical Parameters and Bioactivity. Czech J Food Sci 2018:119–125.

Tu M, Cheng S, Lu W, Du M. 2018. Advancement and prospects of bioinformatics analysis for studying bioactive peptides from food-derived protein: Sequence, structure, and functions. TrAC - Trends Anal Chem 105:7–17. doi:10.1016/j.trac.2018.04.005

Tulipano G, Faggi L, Nardone A, Cocchi D, Caroli AM. 2015. Characterisation of the potential of β-lactoglobulin and α- lactalbumin as sources ofbioactive peptides affecting incretin function: In silico and in vitro comparative studies. Int Dairy J 48:66–72. doi:10.1016/j.idairyj.2015.01.008

Udenigwe CC. 2016. Towards rice bran protein utilization: In silico insight on the role of oryzacystatins in biologicallyactive peptide production. Food Chem 191:135–138. doi:10.1016/j.foodchem.2015.01.043

Udenigwe CC, Aluko RE. 2012. Food protein-derived bioactive peptides: production, processing, and potential health benefits. J Food Sci 77:R11 -24. doi:10.1111/j.1750- 3841.2011.02455.x

Udenigwe CC, Gong M, Wu S. 2013. In silico analysis of the large and small subunits of cereal RuBisCO as precursors of cryptic bioactive peptides. Process Biochem 48:1794–1799. doi:10.1016/j.procbio.2013.08.013

Valdés A, Cifuentes A, León C. 2017. Foodomics evaluation of bioactive compounds in foods. TrAC - Trends Anal Chem 96:2–13. doi:10.1016/j.trac.2017.06.004

Vercruysse L, Smagghe G, van der Bent A, van Amerongen A, Ongenaert M, Van Camp J. 2009. Critical evaluation of the use of bioinformatics as a theoretical tool to find highpotential sources of ACE inhibitory peptides. Peptides 30:575–582. doi:10.1016/j.peptides.2008.06.027

Zheng X, Li DS, Ding K. 2017. Purification and identification of angiotensin I-converting enzyme inhibitory peptides from fermented walnut residues. Int J Food Prop 20:S3326–S3333. doi:10.1080/10942912.2016.1258574

Žilić S, Barać M, Pešić M, Dodig D, Ignjatović-micić D. 2011. Characterization of Proteins from Grain of Different Bread and Durum Wheat Genotypes. Int J Mol Sci 0067:5878–5894. doi:10.3390/ijms12095878
Türk Tarım - Gıda Bilim ve Teknoloji dergisi-Cover
  • ISSN: 2148-127X
  • Yayın Aralığı: Aylık
  • Başlangıç: 2013
  • Yayıncı: Turkish Science and Technology Publishing (TURSTEP)
Sayıdaki Diğer Makaleler

Erzincan Tulum Peyniri

AYLA ARSLANER, Özgenur TÜRKMEN

Ekmeklik Buğdayda Geliştirilen Resiprokal Rekombinant Kendilenmiş Hat Populasyonunda Çavdar Translokasyonu Taşıyan Hatların Yarı Bodurluk, Fotoperiyod, Vernalizasyon ve Waxy Genlerinin Taraması

Tuğba GÜLEÇ, Nevzat AYDIN

Hazar Gölü Sedimentinde Jeolojik Dönemlere Bağlı Olarak Bazı Elementlerin Konsantrasyonlarının Belirlenmesi

Özgür CANPOLAT, Kürşad Kadir ERİŞ, Eyyüp Önder AKKOYUN

Su Kısıtı Koşullarında Biber (Capsicum annuum L.) Bitkisinde Mikoriza Uygulamasının Vejetatif ve Generatif Gelişme Üzerinde Etkileri

KAMİLE ULUKAPI, Zehra KURT, Sevinç ŞENER

Determination of Antimicrobial Activity of Different Essential Oils Obtained from Plants on Staphylococcus aureus Strains Isolated from Foods

Hacer Aslan CANBERİ, Esra ŞENTÜRK, Simge AKTOP, Pınar ŞANLIBABA

Gıda Atıklarından Biyoaktif Peptitlerin Geri Kazanımı ve Biyoyararlanım Özellikleri

Esra GENÇDAĞ, Ahmet GÖRGÜÇ, FATİH MEHMET YILMAZ

Bitkilerden Elde Edilen Çeşitli Uçucu Yağların Gıda Kaynaklı Staphyloccus aureus Suşları Üzerindeki Antimikrobiyel Etkinliğinin Belirlenmesi

Esra ŞENTÜRK, Hacer Aslan CANBERİ, Simge AKTOP, Pınar ŞANLIBABA

Türkiye’de Süt Sığırcılığı Sektöründeki Gelişmelerin Analizi

Arif SEMERCİ, AHMET DURAN ÇELİK, Eylem DURMUŞ

The Effect of Various Wavelengths of LED Light on the Physiological and Morphological Parameters of Comfrey (Symphytum officinale L.)

NURİ ÇAĞLAYAN, Esra Uçar SÖZMEN, Can ERTEKİN

Variation in Chemicals and Growth Parameters of Taşköprü Garlic

Nezahat TURFAN