CRISPR/Cas9 Mediated Genome Editing in Crop Plants

CRISPR/Cas9 Mediated Genome Editing in Crop Plants

Recently, most genomic research has focused on genome editing methods to develop new technologies that could be easy, reliable, and feasible to edit plant genomes for highly productive agriculture. Genome editing is based on alternating a specific target DNA sequence by adding, replacing, and removing DNA bases. This newest technology called CRISPR/Cas9 seems to be less time-consuming, more effective and used in many research areas of plant genetic research. CRISPR/Cas9 systems have many advantages in comparison with ZFNs and TALENs and has been extensively used for genome editing to many crop plant species. Around 20 crop species are successfully worked out for trait improvements, for example, yield improvement, disease resistance, herbicide tolerance, and biotic and abiotic stress management. This review paper will overview recent advances in CRISPR/Cas genome editing research in detail. The main focus will be on the use of CRISPR/Cas9 technology in plant genome research.

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  • Alberts B. 2012. The Breakthroughs of 2012. Science, 338:1511. Anders C, Niewoehner O, Duerst A, Jinek M. 2014.
  • Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease. Nature 513, 569– 573.
  • Anzalone AV, Koblan LW, Liu DR. 2020. Genome editing with CRISPR-Cas nucleases, base editors, transposases and prime editors, Nat Biotechnol. 38: 824-844.
  • Bandyopadhyay A, Kancharla N, Javalkote V, Dasgupta S, Brutnell TP. 2020. CRISPR-Cas12a (Cpf1): A Versatile Tool in the Plant Genome Editing Tool Box for Agricultural Advancement, Frontiers in Plant Science, Volume 11 | Article 584151.
  • Belhaj K, Chaparro-Garcia A, Kamoun S, Nekrasov V. 2013. Plant genome editing made easy: targeted mutagenesis in model and crop plants using the CRISPR/Cas system. Plant Methods. 9:39, 1-10.
  • Bortesi L, Fischer R. 2014. The CRISPR/Cas9 system for Plant genome editing and beyond. Biotechnology Advances 33. 41- 52. Chen K, Wang Y, Zhang R, Zhang H, Gao C. 2019. CRISPR/Cas Genome Editing and Precision Plant Breeding in Agriculture, Annu. Rev. Plant Biol. 70:28.1–28.31.
  • Development Initiatives. 2018. Global Nutrition Report 2018. Bristol: Development Initiatives. 9.
  • Evenson RE, Gollin D. 2003. Assessing the Impact of the Green Revolution, 1960-2000. Science 300: 758–762.
  • Fu Y, Foden JA, Khayter C, Maeder ML, Reyon D, Joung JK, Sander JD. 2013. High frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells. Nat Biotechnol.
  • Gaj T, Gersbach CA, Barbas CF. 2013. ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering. Trends Biotech 31: 397-405.
  • Huang J, Pray C, Rozelle S. 2002. Enhancing the Crops to Feed the Poor. Nature 418: 678–684.
  • Jankele R, Svoboda P. 2014. TAL effectors: tools for DNA targeting. Brief Funct Genomics. 13: 409–19.
  • Jiang F, Doudna JA. 2017. CRISPR-Cas9 structures and mechanisms, Annu. Rev. Biophys. 2017. 46: 505–29.
  • Jinek M, Jiang F, Taylor DW, Sternberg SH, Kaya E, Ma E, Anders C, Hauer M, Zhou K, Lin S et al. (2014). Structures of Cas9 endonucleases reveal RNA-mediated conformational activation. Science, 343:1247997.
  • Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E. 2012. A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity. Science, 337:816-821.
  • Lozano-Juste J, Cutler SR. 2014. Plant genome engineering in full bloom. Trends in Plant Science. Vol 19. No 5.
  • Miki D, Zinta G, Zhang W, Peng F, Feng Z, Zhu J-K. 2021. CRISPR/Cas9-Based Genome Editing Toolbox for Arabidopsis thaliana, Sanchez-Serrano, JJ, Salinas, J (Eds), Arabidopsis Protocols, Methods in Molecular Biology, Vol.2200, Springer Nature.
  • Sonoda E, Hochegger H, Saberi A, Taniguchi Y, Takeda S. 2006. Differential usage of nonhomologous end-joining and homologous recombination in double strand break repair. DNA Repair (Amst) 5:1021-1029.
  • Wang T, Zhang H, Zhu H. 2019. CRISPR technology is revolutionized the improvement of tomato and other fruit crops. Horticulture Research. 6, 77: 1-13
  • Wood AJ, Lo TW, Zeitler B, Pickle CS, Ralston EJ, Lee AH, Amora R, Miller JC, Leung E, Meng X, Zhang L, Rebar EJ, Gregory PD, Urnov FD, Meyer BJ. 2011.Targeted genome editing across species using ZFNs and TALENs. Science, 333:307.
  • Wright AV, Nunez JK, Doudna JA. 2016. Biology and applicationof CRISPR systems: Harnessing nature's tool box for genomic engineering. Cell 164:29-44.
  • Wu X, Kriz AJ, Sharp PA. 2014. Target specificity of the CRISPR-Cas9 system. Quant Biol. 2: 59–70
  • Xuebing Wu, Andrea JK, Sharp PA. 2014. Target specificity of CRISPR-Cas9 system, Quantitative Biology. 2(2): 59–70.
Türk Tarım - Gıda Bilim ve Teknoloji dergisi-Cover
  • ISSN: 2148-127X
  • Yayın Aralığı: Aylık
  • Başlangıç: 2013
  • Yayıncı: Turkish Science and Technology Publishing (TURSTEP)