Bazı Sebze Türlerinin Tohumlarındaki Viral Etmenlerin Saptanması Amacıyla Kullanılan Yöntemlerin Duyarlılık Durumunun Karşılaştırılması

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Anahtar Kelimeler:

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The Comparison of the Sensitivity of Viral Detection Methods in Certain Vegetable Seeds

The present study was conducted to compare the sensibility of different methods which are used to detect the agents of viral diseases in seeds of some vegetables which are important for fresh consumption and seed production in Turkey. For the study in question; total 43 seed samples were collected from the growers and seed companies and biological, serological and molecular methods were used for the detection of viral agents in these samples. The data from the experiments showed that 15 seed samples were not infected with any virus according to the results of all detection methods (DAS-ELISA, RT-PCR, mechanical inoculation to test plants and symptomatology). On the other hand, their viral infection could not be detected by other methods, although 5 seed samples had some visual symptoms. Based on research results, the viral agents have determined in a total of 23 samples and all of the 23 infected samples by various viruses (%100) were detected by RT-PCR method. Besides, viral symptoms were observed in the 22 of 23 samples tested by DAS-ELISA (%96), 18 of 19 samples inoculated herbaceous test plants (% 95) and 7 of the 23 infected seed samples with various viruses (%30)

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  • Bhat, A.I., S. Devasahayam, M.N.Venugopal, and R.Suseela-Bhai, 2005. Distribution and incidence of viral diseases of black pepper in Karnataka and Kerala, India. J. Plantation Crops 33: 59–64.
  • Candresse, T.,T. Lanneau, F. Revers, N. Grasseau, G. Macquare, S. German, T. Malinowsky, and J. Dunez, 1995. An immunocapture PCR assay adapted to the detection and the analysis of the molecular variability of apple chlorotic leaf spot virus. Acta Horticulture 386:136-147.
  • Carroll, T.W., 1983. Certification schemes against barley stripe mosaic. Seed Science and Technology 11: 1033- 1042.
  • Clark, M.F.,and A.N. Adams, 1977. Characteristic of Microplate Method of Enzyme-Linked Immunosorbent Assay for Detection of Plant Viruses. J. Gen. Virol., 34: 475-483.
  • Çiçek, Y. and Ü. Yorgancı, 1991. Studies on the Incidence of Tobacco Mosaic Virus on Sertified Seed of Tomato, Pepper and Eggplant in Agean Region. J. Turk. Phytopath., 20 (2-3): 57-68.
  • Değirmenci, N.F. ve S. Açıkgöz, 2005.Aydın ilinde yaygın olarak kullanılan sertifikalı domates tohumlarındaki bazı viral etmenlerin saptanmasında biyolojik ve serolojik yöntemlerin kullanılması. Türkiye II. Tohumculuk Kongresi, Adana, s. 379-380.
  • Desbiez, C.and H. Lecoq, 2004. The nucleotide sequence of Watermelon mosaic virus (WMV, Poty virus) reveals interspecific recombination between two related poty viruses in the 5 part of the genome. Arch. Virol. 149: 1619–1632
  • Die, 2011a. Devlet İstatistik Enstitüsü. Türkiye İstatistik Yıllığı (Turkey’s Statistical Yearbook) 2009 (syf:198).
  • Die, 2011b.Devlet İstatistik Enstitüsü. İstatistiksel Göstergeler (Statistical Indicators) 1923-2009 (syf:178-179).
  • Erkan, S.,1998. Tohum Patolojisi. E. Ü. Ziraat Fakültesi Bitki Koruma Bölümü, Bornova, İzmir. Gözdem Ofis, 275 S.
  • Erkan, S., M. Gümüş, H. Türküsay ve İ. Duman, 1995. Sanayi Domatesi Çeşitlerine Ait Tohum Örneklerinde Tohum Kaynaklı Bazı Hastalık Etmenlerinin Bulunma Durumunun Saptanması Üzerinde Araştırmalar.
  • Faostat, FaoStatistics Division 2011. (Erişim Tarihi: 25 Mart 2011). http://faostat.fao.org/site/567/ Desktop Default.aspx?PageID=567#ancor.
  • Foıssac, X., L.Svanella-Dumas, M.J.Dulucq, P. Gentit and T.Candresse, 2001. Polyvalent detection of fruit tree Tricho, Capillo and Foveaviruses by nested RT-PCR using degenerated and inosine containing primers (PDO RT-PCR).Acta Hort 550:37 – 43.
  • Griesbach, J.A., 1995. Detection of tomato ringspot virus by polymerase chain reaction. Plant Disease79:1054-1056.
  • Gümüş, M.,1998. İzmir İlinde Biberlerdeki Viral Hastalık Etmenlerinin ve Oranlarının Saptanması ve Bazı Biber Çeşitlerinin Bu Virüslere Reaksiyonların Belirlenmesi Üzerine Araştırmalar, Doktora Tezi, Ege Üniversitesi, Ziraat fak., Bornova, İzmir, 1998.
  • Ista, 2007. http://www.seedtest.org/en/home.html (Erişim Tarihi: 2007).
  • Le Gall, O., T. Candresseand J. Dunez, 1995. Transfer of the 31 non-translated region of grapevine chrome mosaic virus RNA-1 by recombination to tomato black ring virus RNA-2 in pseudorecombinant isolates.Journal of General Virology 76: 1285-1289.
  • Mackenzie, D.J.,M.A. Mclean, S.Mukerji, and M. Green, 1997. Improved RNA extraction from woody plants for the detection of viral pathogens by reverse transcription-polymerase chain reaction. Plant Disease 81: 222-226.
  • Martínez-Priego, M.,C.Córdoba, and C.Jordá, 2004. First Report of Alfalfa mosaic virus in Lavandula officinalis, Disease Notes88 (8):90.
  • Matthews, R.E.F.,1991. Plant Virology, 3rd ed. Acad. Pres, New York, 897 p.
  • Moreno, I.M.,J.R. Thompson, and F. Garcia-Arenal, 2004. Analysis of the systemic colonization of cucumber plants by Cucumber green mottle mosaic virus. Journal of General Virology 85:749–759.
  • Mumford, R.A.,I. Barker, and K.R. Wood, 1994. The detection of tomato spotted wilt virus using the polymerase chain reaction. J. Virol. Methods 46: 303- 311.
  • Neergard, P.,1972. International and national cooperation in seed health testing and certification.Proc.Int. Seed Test.Ass. 37: 117-138.
  • Nie, X., and R.P. Singh, 2002. A new approach for the simultaneous differentiation of biological and geographical strains of potato virus Y by uniplex and multiplex RT-PCR. J. Virol. Meth. 104: 41-54.
  • Nienhaus, F., 1976. Lehrbuch der Phytomedizin. Verlag Paul Parey, Berlin und Hamburg, 490 p.
  • Nogay, A., 1983. Marmara bölgesi cucurbitaceae familyası kültür bitkilerinde görülen virüs hastalıklarının tanılanması, tohumla geçiş durumlarının ve konukçu dizilerinin saptanması üzerinde araştırmalar. (Doktora tezi). Erenköy- İstanbul,120s.
  • Noordam, D.,1973, Identification of Plant Viruses, Methods and Experiments, PUDOC, Wageningen, the Netherlands, 208p.
  • Rıedle-Bauer, M.,B.Suarez, and H.J. Reınprecht, 2002. Seed transmission and natural reservoirs of patojen Zucchini yellow mosaic virus in Cucurbita pepo var. styriaca. Journal of Plant Diseases and Protection 109: 200-206.
  • Silva, R.M.,E.R. Souto, J.C. Pedroso, R. Arakava, A.M. Almeida, A.Barboza, and J.Vida, 2008. Detection and Identification of TMV Infecting Tomato Under Protected Cultivation in Paraná State.Brazılıan Archıves Of Bıology And Technology, An International Journal 51 (5): 903-909.
  • TSÜAB, 2010. TSÜAB-TÜRKTED Ortak Çalışma Grupları Grup Raporları, Ankara, 112s.
  • Tzanetakis, I.E., I.C. Mackey, and R.R. Martın, 2004. Strawberry necrotic shock virus is a distinct virus and not a strain of Tobacco streak virus. Arch Virol. 149: 2001–2011.
  • Walter, S. A.,.and T.A. Zıtter,2003. Compendium of cucurbit diseases.HortScience 38 (65):42.
  • Yoo, B.C.,F. Kragler, E. Varkonyi-Gasıc, V. Haywood,S. Archer-Evans, Y.M. Lee, T.J.Loughand W.J. Lucas, 2004. A Systemic Small RNA Signaling System in Plants. American Society of Plant Biologist, The Plant Cell 16: 1979-2000.
  • Yorgancı, Ü.,1975. İzmir Ilinde Domateslerdeki Virüs Hastalıkları, Yayılma ve Zarar Durumları, Elde Edilen İzolatlarla Biyolojik ve Serolojik Araştırmalar (Doçentlik Tezi). TOAG/127 No’lu Proje Nihai Raporu. Ege Üniv. Ziraat Fak. Bornova-İzmir. 102 s.
  • Zeng, R., Q. Liao, J. Feng, D. Lı, and J. Chen, 2007. Synergy between Cucumber mosaic virus and Zucchini yellow mosaic virus on cucurbitaceae hosts tested by Real-Time Reverse Transcription-Polymerase Chain Reaction. Acta Biochimica et Biophysica Sinica 39(6): 431–437.