Akciğer Histopatoloji Görüntülerinden Çıkarılan Derin Özellikleri Kullanan Makine Öğrenmesi Sınıflandırıcıları ile Akciğer Kanseri Tespiti

Kanser dünyada ve ülkemizde gözlenme sıklığı giderek artan sağlık sorunlarının başında gelmekte ve her yıl milyonlarca insan kanser nedeniyle hayatını kaybetmektedir. Histopatolojik tanı, kanser türünün teşhisinde ve tedavi stratejisinin belirlenmesinde önemli bir rol oynamaktadır. Bu çalışmada akciğer histopatoloji görüntüleri kullanılarak derin öğrenme yöntemlerine dayalı bir otomatik model geliştirilmesi amaçlanmıştır. Geliştirilen modelde öncelikle DenseNet201, MobileNetV2, VGG16, NASNetLarge, Xception, InceptionV3, VGG19, EfficientNetB7 ve ResNet152 gibi önceden eğitilmiş derin öğrenme mimarileri kullanılarak özellik çıkarımı gerçekleştirilmiş ve daha sonra Adaboost, Çok katmanlı algılayıcı, Rastgele orman ve Destek vektör makinesi gibi makine öğrenmesi yöntemleri ile sınıflandırılmıştır. Ardından sınıflandırıcılardan elde edilen değerlendirme sonuçlarına göre en iyi performansa sahip ilk üç derin öznitelik birleştirilerek makine öğrenmesi sınıflandırıcılarına girdi olarak kullanılmıştır. Deneysel sonuçlar en iyi özniteliklerin birlikte kullanılmasının sınıflandırma başarısına olumlu yönde katkı sağladığını göstermiştir. Test veri setinden elde edilen sonuçlar, önerilen hibrit yaklaşımın%97.22 ortalama sınıflandırma başarısı ile akciğer histopatoloji görüntülerinden adenokarsinom, skuamöz hücreli karsinom ve normal dokuların otomatik sınıflandırmasında etkili olduğunu göstermiştir.

Lung Cancer Detection with Machine Learning Classifiers using Deep Features Extracted from Lung Histopathology Images

Cancer is one of the health problems with an increasing incidence in the world and in our country, and millions of people die every year due to cancer. Histopathological diagnosis plays an important role in diagnosing the type of cancer and determining the treatment strategy. In this study, it is aimed to develop an automatic model based on deep learning methods using lung histopathology images. In the developed model, firstly feature extraction was performed using pre-trained deep learning architectures such as DenseNet201, MobileNetV2, VGG16, NASNetLarge, Xception, InceptionV3, VGG19, EfficientNetB7 and ResNet152, and then classified with machine learning methods such as Adaboost, Multi-layer perceptron, Random forest and Support vector machines. Afterwards, according to the evaluation results obtained from the classifiers, the first three deep features with the best performance were combined and used as input to the machine learning classifiers. Experimental results showed that using the best features together contributes positively to the classification success. Results from the test dataset showed that the proposed hybrid approach was effective in automatic classification of adenocarcinoma, squamous cell carcinoma and benign tissues from lung histopathology images, with an average classification accuracy of 97.22%.

___

  • [1] Torre L.A., Siegel R.L., Jemal A. 2019. Lung cancer statistics. Lung Cancer and Personalized Medicine, 1–19.
  • [2] Rosamaria P., Daniela P., Rosanna L., Michele M., Annamaria C., Pamela P., Antonietta B.M., Alfredo Z.F., Gabriella D.B., Antonia Z., others 2019.KRAS-driven lung adenocarcinoma and B cell infiltration: novel insights for immunotherapy. Cancers. 11 (8): 1145.
  • [3] Gan Z., Zou Q., Lin Y., Huang X., Huang Z., Chen Z., Xu Z., Lv Y. 2019. Construction and validation of a seven-microRNA signature as a prognostic tool for lung squamous cell carcinoma. Cancer Management and Research, 11: 5701.
  • [4] Ranschaert E.R., Morozov S., Algra P.R. (ed) 2019. Artificial Intelligence in Medical Imaging: Opportunities, Applications and Risks. Springer
  • [5] Janowczyk A., Madabhushi A. 2016. Deep learning for digital pathology image analysis: a comprehensive tutorial with selected use cases. Journal of Pathology Informatics, 7.
  • [6] Abdullah D.M., Ahmed N.S. 2021. A review of most recent lung cancer detection techniques using machine learning. International Journal of Science and Business, 5 (3): 159–173.
  • [7] Dandl E., Çakiroğlu M., Ekşi Z., Özkan M., Kurt Ö.K., Canan A. 2014. Artificial Neural Network-based Classification System for Lung Nodules on Computed Tomography Scans. 2014 6th International conference of soft computing and pattern recognition (SoCPaR). 382–386.
  • [8] Chauhan D., Jaiswal V. 2016. An Efficient Data Mining Classification Approach for Detecting Lung Cancer Disease. 2016 International Conference on Communication and Electronics Systems (ICCES). 1–8.
  • [9] Faisal M.I., Bashir S., Khan Z.S., Khan F.H. 2018. An Evaluation of Machine Learning Classifiers and Ensembles for Early Stage Prediction of Lung Cancer. 2018 3rd International Conference on Emerging Trends in Engineering, Sciences and Technology (ICEEST). 1–4.
  • [10] Nasser I.M., Abu-Naser S.S. 2019. Lung cancer detection using artificial neural network. International Journal of Engineering and Information Systems, 3 (3): 17–23.
  • [11] Thallam C., Peruboyina A., Raju S.S.T., Sampath N. 2020. Early Stage Lung Cancer Prediction Using Various Machine Learning Techniques. 2020 4th International Conference on Electronics, Communication and Aerospace Technology (ICECA). 1285–1292.
  • [12] Shen W., Zhou M., Yang F., Yang C., Tian J. 2015. Multi-Scale Convolutional Neural Networks for Lung Nodule Classification. International Conference on Information Processing in Medical Imaging, 588–599.
  • [13] Rao P., Pereira N.A., Srinivasan R. 2016. Convolutional Neural Networks for Lung Cancer Screening in Computed Tomography (CT) Scans. 2016 2nd International Conference on Contemporary Computing and Informatics (IC3I), 489–493.
  • [14] Alakwaa W., Nassef M., Badr A. 2017. Lung cancer detection and classification with 3D convolutional neural network (3D-CNN). Lung Cancer. 8 (8): 409.
  • [15] Song Q., Zhao L., Luo X., Dou X. 2017. Using deep learning for classification of lung nodules on computed tomography images. Journal of Healthcare Engineering, 8314740.
  • [16] Shakeel P.M., Burhanuddin M.A., Desa M.I. 2019. Lung cancer detection from CT image using improved profuse clustering and deep learning instantaneously trained neural networks. Measurement, 145: 702–712.
  • [17] Abbas M.A., Bukhari S.U.K., Syed A., Shah, S.S.H. 2020. The Histopathological Diagnosis of Adenocarcinoma & Squamous Cells Carcinoma of Lungs by Artificial intelligence: A comparative study of convolutional neural networks. medRxiv.
  • [18] Masud M., Sikder N., Nahid A.-A., Bairagi A.K., AlZain M.A. 2021. A machine learning approach to diagnosing lung and colon cancer using a deep learning-based classification framework. Sensors. 21 (3): 748.
  • [19] Garg S., Garg S. 2020. Prediction of Lung and Colon Cancer through Analysis of Histopathological Images by Utilizing Pre-trained CNN Models with Visualization of Class Activation and Saliency Maps. 2020 3rd Artificial Intelligence and Cloud Computing Conference, 38–45.
  • [20] Hatuwal B.K., Thapa H.C. 2020. Lung cancer detection using convolutional neural network on histopathological images. International Journal of Computer Trends and Technology, 68 (10): 21–24.
  • [21] Borkowski A.A., Bui M.M., Thomas L.B., Wilson C.P., DeLand L.A., Mastorides S.M. 2019. Lung and colon cancer histopathological image dataset (lc25000). arXiv Prepr. arXiv1912.12142.
  • [22] Christodoulidis S., Anthimopoulos M., Ebner L., Christe A., Mougiakakou S. 2016. Multisource transfer learning with convolutional neural networks for lung pattern analysis. IEEE Journal of Biomedical and Health Informatics, 21 (1): 76-84.
  • [23] Tajbakhsh N., Shin J.Y., Gurudu S.R., Hurst R.T., Kendall C.B., Gotway M.B., Liang J. 2016. Convolutional neural networks for medical image analysis: full training or fine tuning? IEEE Transactions on Medical Imaging, 35 (5): 1299-1312.
  • [24] Pan S.J., Yang Q. 2009. A survey on transfer learning. IEEE Transactions on Knowledge and Data Engineering, 22 (10): 1345-1359.
  • [25] Freund Y., Schapire, R.E. 1997. A decision-theoretic generalization of on-line learning and an application to boosting. Journal of Computer and System Sciences, 55 (1): 119-139.
  • [26] Duda R.O., Hart P.E., others 2006. Pattern Classification. John Wiley & Sons.
  • [27] Breiman L.2001. Random forests. Machine Learning, 45: 5–32.
  • [28] Cortes C., Vapnik V. 1995. Support-vector networks. Machine Learning, 20: 273–297.
Bitlis Eren Üniversitesi Fen Bilimleri Dergisi-Cover
  • Yayın Aralığı: Yılda 4 Sayı
  • Başlangıç: 2012
  • Yayıncı: Bitlis Eren Üniversitesi Rektörlüğü