Study of mitochondrial DNA (mtDNA) D - loop region polymorphism in Şavak Akkaraman sheep
Study of mitochondrial DNA (mtDNA) D - loop region polymorphism in Şavak Akkaraman sheep
This study was conducted to investigate the maternal genetic diversity using the mtDNA D - loop region 842 base pair (bp)polymorphism in Şavak Akkaraman sheep raised in the province of Erzincan. According to the results, in the mtDNA D - loop of theŞavak Akkaraman breed, 27 polymorphic sites and 20 haplotypes were identified and then, 11 of the 20 haplotypes identified in Şavaksheep were in haplogroup B (55%), 6 in haplogroup A (30%), and 3 in haplogroup C (15%). Haplogroup B was the most frequenthaplogroup in Şavak Akkaraman sheep. Haplotype and nucleotide diversities were estimated to be 0.995 ± 0.004 and 0.0146 ± 0.0003,respectively. The Şavak Akkaraman breed was compared with the mtDNA sequencing of different breeds and wild sheep, and thecontribution of the breed to biodiversity was considered.
___
- 1. Ryder ML. Sheep. In: Evolution of Domesticated Animals. New
York, USA: Longman; 1984. pp. 63-84.
- 2. Zeder MA. Domestication and early agriculture in the
Mediterranean basin: origins, diffusion, and impact.
Proceedings of the National Academy of Sciences of the United
States of America 2008; 105 (33): 11597-11604.
- 3. Demirci S, Koban BE, Dağtaş ND, Pişkin E, Engin A et al.
Mitochondrial DNA diversity of modern ancient and wild
sheep (Ovis gmelinii anatolica) from Turkey: new insights on
the evolutionary history of sheep. PLoS One 2013; 11:8 (12):
e81952.
- 4. Rischkowsky B, Pilling D. The State of the World’s Animal
Genetic Resources for Food and Agriculture. Rome, Italy:
Food and Agriculture Organization of the United Nations;
2007.
- 5. Öner Y, Calvo JH, Elmacı C. Investigation of the genetic
diversity among native Turkish sheep breeds using mtDNA
polymorphisms. Tropical Animal Health and Production 2013;
45: 947-951.
- 6. Taberlet P, Coissac E, Pansu J, Pompanon F. Conservation
genetics of cattle, sheep, and goats. Comptes Rendus Biologies
2011; 334: 247-254.
- 7. Soysal Mİ, Özkan E, Gürcan EK. The status of native farm
animal genetic diversity in Turkey and in the world. Trakia
Journal of Sciences 2003; 1 (3):1-12 (in Turkish).
- 8. Bruford MW, Brandley DG, Luikart G. DNA markers reveal
the complexity of livestock domestication. Nature 2003; 4: 900-
910.
- 9. Hiendleder S, Lewalski H, Wassmuth R, Ke A. The complete
mitochondrial DNA sequence of the domestic sheep (Ovis
Aries) and comparison with the other major ovine haplotype.
Journal of Molecular Evolution 1998; 47 (4): 441-448.
- 10. Pereira F, Pereira L, Van AB, Bradley Dg, Amorim A. The
MtDNA catalogue of all Portuguese autochthonous goat
(Capra Hircus) breeds: high diversity of female lineages at the
Western fringe of European distribution. Molecular Ecology
2005; 14 (8): 2313-2318.
- 11. Tapio M, Marzanov N, Ozerov M, Ćinkulov M, Gonzarenko G et
al. Sheep mitochondrial DNA variation in European, Caucasian
and Central Asian areas. Molecular Biology and Evolution 2006;
23: 1776-1783.
- 12. Wood NJ, Phua SH. Variation in the control region sequence
of the sheep mitochondrial genome. Animal Genetics 1996; 27:
25-33.
- 13. Pedrosa S, Uzun M, Arranz JJ, Gutierrez-Gil B, San PF et al.
Evidence of three maternal lineages in near Eastern sheep
supporting multiple domestication events. Proceedings Biology
of the Society 2005; 272 (1577): 2211-2217.
- 14. Luo YZ, Cheng SR, Batsuuri L, Badamdorj D, Olivier H et al.
Origin and genetic diversity of Mongolian and Chinese sheep
using mitochondrial DNA D - Loop sequences. Yi Chuan Xue
Bao 2005; 32 (12): 1256-1265.
- 15. Meadows JR, Cemal I, Karaca O, Gootwıne E, Kıjas JW. Five
ovine mitochondrial lineages identified from sheep breeds of
the near East. Genetics 2007; 175 (3): 1371-1379.
- 16. Meadows JR, Hiendleder S, Kijas JW. Haplogroup relationships
between domestic and wild sheep resolved using a mitogenome
panel. Heredity 2011; 106 (4): 700-706.
- 17. TÜİK. Hayvansal Üretim İstatistikleri. Ankara, Turkey: TÜİK;
2018 (in Turkish).
- 18. Akçapınar H. Koyun Yetiştiriciliği. 2nd ed. Ankara, Turkey:
İsmat Matbaacılık; 2000 (in Turkish).
- 19. Kutlu M. Şavaklı Türkmenlerde Göçer Hayvancılık. Ankara,
Turkey: The Ministry of Culture and Tourism; 1987 (in Turkish).
- 20. Ministry of Agriculture and Forestry. Hayvan Bilgi Sistemi
(HAYBIS). Ankara, Turkey: Ministry of Agriculture and
Forestry; 2018 (in Turkish).
- 21. Bodo I. Principles in use of live animals.Animal Genetic
Resources. Strategies for Improved Use and Conservation.
Rome, Italy: Food and Agriculture Organization; 1987. pp.191-
199.
- 22. Henson EL. In Situ Conservation of Livestock And Poultry.
Rome, Italy: Food and Agriculture Organization Animal
Production and Health Paper 99; 1992.
- 23. Ertuğrul M, Dellal G, Soysal IM, Elmacı C, Akın O et al.
Türkiye yerli koyun ırklarının korunması. Uludağ Üniversitesi
Ziraat Fakültesi Dergisi 2009; 23 (2): 97-119 (in Turkish).
- 24. Yağcı S. Şavak Akkaraman koyunlarının bazı morfolojik
ve fizyolojik özellikleri ile moleküler filogenetik ilişkilerin
belirlenmesi. PhD, Kahramanmaraş Sütçü İmam Üniversitesi,
Kahramanmaraş, Turkey, 2017 (in Turkish).
- 25. Librado P, Rozas J. DnaSP v5: a software for comprehensive
analysis of DNA polymorphism data. Bioinformatics 2009; 25:
1451-1452.
- 26. Kimura M. A simple method for estimating evolutionary rate
of base substitutions through comparative studies of nucleotide
sequences. Journal of Molecular Evolution, 1980; 16: 111-120.
- 27. Tamura K, Dudley J, Nei M. Kumar S. MEGA4: molecular
evolutionary genetics analysis (MEGA) software version 4.0.
Molecular Biology and Evolution 2007; 24: 1596-1599.
- 28. Nei M, Kumar S. Molecular Evolution and Phylogenetics.
Oxford, UK: Oxford University Press; 2000.
- 29. Pereira F, Davis SJ, Pereira L, Mcevoy B, Bradley DG et al.
Genetic signatures of a Mediterranean influence in Iberian
Peninsula sheep husbandry. Molecular Biology and Evolution
2006; 23 (7): 1420-1426.
- 30. Yüncü E, Koban E, Togan I. Mitochondrial DNA (mtDNA)
haplogroup compositions of three native Turkish sheep
breeds and their implications on the conservation studies. In:
31st International Society of Animal Genetics Conference;
Netherlands; 2008.
- 31. Guangxin E, Yong- Ju Z, Ri -Su N, Yue - Hui M, Jia - Hua Z
et al. Meta-analysis evidence of maternal lineages in Chinese
Tibetan sheep using mtDNA D - loop panel. Mitochondrial
DNA 2016. doi: 10.3109/24701394.2016.1143469
- 32. Zhao Y, Zhao E, Zhang N, Duan C. Mitochondrial DNA
diversity, origin, and phylogenic relationships of three Chinese
large – fat - tailed sheep breeds. Tropical Animal Health and
Production 2011; 43: 1405-1410.
- 33. Liu J, Ding X, Zeng Y, Yue Y, Guo X et al. Genetic diversity and
phylogenetic evolution of Tibetan sheep based on mtDNA D -
loop sequences. PLoS One 2016; 11(7): e0159308. doi: 10.1371/
journal.pone.0159308
- 34. Koseniuk A, Słota E. Mitochondrial control region diversity in
Polish sheep breeds. Archives Animal Breeding 2016; 59: 227-
233.
- 35. Alonso RA, Arvizu RU, Vazquez AG. Mitochondrial DNA
sequence analysis of the Mexican Creole sheep (Ovis aries)
reveals a narrow Iberian maternal origin. Mitochondrial DNA
Part A, DNA Mapping, Sequencing, and Analysis 2017; 28 (6):
793-800.
- 36. Nigussie H, Mwacharo JM, Osama S, Agaba M, Mekasha
Y et al. Genetic diversity and matrilineal genetic origin of
fat - rumped sheep in Ethiopia. Tropical Animal Health and
Production 2019. doi: 10.1007/s11250-019-01827 - z
- 37. Chen SY, Duan ZY, Sha T, Xiangyu J, Wu SFet al. Origin, genetic
diversity, and population structure of Chinese domestic sheep.
Gene 2006; 376 (2): 216-223.