Isolation of multidrug resistant coliforms and their bacteriophages from swine slurry
Slurry management is a contemporary agricultural problem. Although liquid manure is a valuable fertiliser, it may pose
a microbiological threat due to spreading of bacteria resistant to various antibiotics. Fermentation has been proposed as a solution
to this problem, although it does not fully eliminate the antibiotic-resistant strains. The presence of gram-negative rods resistant
to antimicrobials may cause an uncontrolled transmission of resistance factors and genes in the natural environment. Therefore, a
biocontrol system is necessary to prevent this phenomenon. The aim of this study was to detect multidrug-resistant (MDR) bacteria
and their lytic bacteriophages in raw swine slurry. For that purpose, MDR bacteria from the family
Enterobacteriaceae
were isolated
and tested with bacteriophages using a modified detection method. The study suggests that the bacteriophages present in the slurry are
active against MDR bacteria and possibly could be used as a biocontrol agent for reduction of these microorganisms in fertilisers of
animal origin. In the scope of the results obtained, a novel approach for the evaluation of slurry based on the preselection method is
proposed. Moreover, the study reports the first case of isolation of a bacteriophage active against
Providencia alcalifaciens
.
___
- Mazur Z, Mazur T. Effects of long-term organic and mineral
fertilizer applications on soil nitrogen content. Polish J Environ
Stud 2015; 24: 2073-2078.
- Amin MGM, Si Unek J, Laegdsmand M. Agricultural Water
Management Simulation of the redistribution and fate of
contaminants from soil-injected animal slurry. Agric Water
Manag 2014; 131: 17-29.
- Reuland EA, al Naiemi N, Raadsen SA, Savelkoul PH,
Kluytmans JA, Vandenbroucke-Grauls CM. Prevalence of
ESBL-producing Enterobacteriaceae in raw vegetables. Eur J
Clin Microbiol Infect Dis 2014; 33: 1843-1846.
- Chowdhury PR, McKinnon J, Wyrsch E, Hammond JM,
Charles IG, Djordjevic SP. Genomic interplay in bacterial
communities: implications for growth promoting practices in
animal husbandry. Front Microbiol 2014; 5: 394.
- EC Regulation (EC) No 1831/2003 of the European Parliament
and of The Council of 22 September 2003 on additives for use
in animal nutrition. European Commission, 2003.
- Martínez JL. Bottlenecks in the transferability of antibiotic
resistance from natural ecosystems to human bacterial
pathogens. Front Microbiol 2012; 2: 265.
- Semenov AV, van Overbeek L, van Bruggen AHC. Percolation
and survival of
Escherichia coli
O157:H7 and
Salmonella
enterica
serovar Typhimurium in soil amended with
contaminated dairy manure or slurry. Appl Environ Microbiol
2009; 75: 3206-3215.
- Andersen JL, He GX, Kakarla P, Ranjana KC, Kumar S, Lakra
WS, Mukherjee MM, Ranaweera I, Shrestha U, Tran T, et
al. Multidrug efflux pumps from
Enterobacteriaceae
,
Vibrio
cholerae
and
Staphylococcus aureus
bacterial food pathogens.
Int J Environ Res Public Health 2015; 12: 1487-1547.
- Gao L, Hu J, Zhang X, Wei L, Li S, Miao Z, Chai T. Application
of swine manure on agricultural fields contributes to extended-
spectrum β-lactamase-producing
Escherichia coli
spread in
Tai’an, China. Front Microbiol 2015; 6: 313.
- Van Elsas JD, Semenov AV, Costa R, Trevors JT. Survival of
Escherichia coli
in the environment: fundamental and public
health aspects. ISME J 2010; 5: 173-183.
- Berglund B. Method for fluorescent marker swapping and its
application in
Steinernema
nematode colonization studies. J
Microbiol Methods 2015; 113: 34-37.
- Viazis S, Akhtar M, Feirtag J, Brabban AD, Diez-Gonzalez F.
Isolation and characterization of lytic bacteriophages against
enterohaemorrhagic
Escherichia coli
. J Appl Microbiol 2011;
110: 1323-1331.
- Grygorcewicz B, Grudziński M, Wasak A, Augustyniak A,
Pietruszka A, Nawrotek P. Bacteriophage-mediated reduction
of
Salmonella
Enteritidis in swine slurry. Appl Soil Ecol 2017;
119: 179-182.
- Abedon ST. Bacterial “immunity” against bacteriophages.
Bacteriophage 2012; 2: 50-54.
- CLSI. M100-S25 Performance Standards for Antimicrobial
Susceptibility Testing; Twenty-Fifth Informational Supplement
An informational supplement for global application developed
through the Clinical and Laboratory Standards Institute
consensus process. Clinical and Laboratory Standards Institute
2015.
- Matuschek E, Brown DFJ, Kahlmeter G. Development of the
EUCAST disk diffusion antimicrobial susceptibility testing
method and its implementation in routine microbiology
laboratories. Clin Microbiol Infect 2014; 20: 255-266.
- Kropinski AM, Mazzocco A, Waddell TE, Lingohr E, Johnson
RP. Enumeration of bacteriophages by double agar overlay
plaque assay. Methods Mol Biol 2009; 501: 69-76.
- Cotta MA, Whitehead TR, Zeltwanger RL. Isolation,
characterization and comparison of bacteria from swine faeces
and manure storage pits. Environ Microbiol 2003; 5: 737-745.
- Fan Y, Mei LS, Ling HH, Ping C. Heavy metal and antibiotic
resistance in bacteria isolated from the environment of swine
farms. J Chem Soc Pak 2014; 36: 360-364.
- Rzewuska M, Czopowicz M, Kizerwetter-Świda M, Chrobak
D, Błaszczak B, Binek M. Multidrug resistance in
Escherichia
coli
strains isolated from infections in dogs and cats in Poland
(2007–2013). Sci World J 2015; 2015: 1-8.
- Koskella B, Meaden S. Understanding bacteriophage specificity
in natural microbial communities. Viruses 2013; 5: 806-823.
- Sharma M. Lytic bacteriophages: potential interventions
against enteric bacterial pathogens on produce. Bacteriophage
2013; 3: e25518.
- O’Flynn G, Ross RP, Fitzgerald GF, Coffey A. Evaluation of a
cocktail of three bacteriophages for biocontrol of
Escherichia
coli
O157:H7. Appl Environ Microbiol 2004; 70: 3417-3424.
- Grygorcewicz B, Struk M, Wasak A, Nawrotek P. Effective
bacteriolysis of Shiga toxin-producing
Escherichia coli
O157:
H7 caused by specific bacteriophage isolated from pig slurry.
Acta Sci Pol Zootech 2015; 14: 69-76.
- O’Flaherty S, Ross RP, Flynn J, Meaney WJ, Fitzgerald GF, Coffey
A. Isolation and characterization of two anti-staphylococcal
bacteriophages specific for pathogenic
Staphylococcus aureus
associated with bovine infections. Lett Appl Microbiol 2005;
41: 482-486.
- Vieira ABR, Koh IHJ, Guth BEC.
Providencia alcalifaciens
strains translocate from the gastrointestinal tract and are
resistant to lytic activity of serum complement. J Med Microbiol
2003; 52: 633-636.
- Yoh M, Matsuyama J, Ohnishi M, Takagi K, Miyagi H, Mori K,
Park KS, Ono T, Honda T. Importance of
Providencia
species
as a major cause of travellers’ diarrhoea. J Med Microbiol 2005;
54: 1077-1082.