Developing and comparing two diff erent prognostic indexes for predicting disease-free survival of nonmetastatic breast cancer patients

Amaç: Cox regresyon analizi ve recursive partitioning analizine dayanan sağkalım ağacı (ST) ile non-metastatik meme kanserli hastaların alt gruplara ayrılmasında farklı prognostik indeksler (Pİ) belirlemek ve bu metodların tahmin güçlerini Kaplan-Meier analizi ile karşılaştırmaktır. Yöntem ve gereç: Veriler, her bir prognostik faktör için 410 hastadan elde edildi. Cox regresyon analizi, ortak değişkenlere göre yaşamsal dağılımı inceleyen bir yöntemdir. ST yöntemi ise recursive partitioning algoritmasına dayanan ağaca yapılı bir sağkalım analizidir. Çalışmada, train ve test setleri için Harrell’ın uyum indeksine göre hata oranları incelendi. Ayrıca train seti için yaşam eğrileri Kaplan-Meier yöntemi ile tahmin edildi. Hastalıksız sağkalım, hastalığın ilk tanısından (ilk tedavinin başlangıcından) ilk nüksüne kadar geçen zaman olarak hesaplandı. Bulgular: 48 aylık ortanca takip sonrası 100 (% 24,4) hastada hastalıksız sağkalım açısından en az bir olay görüldü. Cox regresyon analizinde HER2/neu ve aksiller nodal durumuna dayanan basit bir Pİ geliştirildi. ST metodunda üç değişken belirlendi ve bunlar HER2/neu, aksiller nodal durum ve östrojen reseptör durumu idi. Nüksü belirleyen en önemli faktör aksiller nodal durum idi. Sonuç: ST ve Cox regresyon analizi ile elde edilen Pİ’ler, hastalıksız sağkalımın tahmin edilmesinde benzer performans gösterdi. Modellerin hata oranlarının, train ve test setlerinde birbirilerine yakın olduğu belirlendi. Ayrıca HER2/neu ve aksiller nodal durumun, meme kanserli hastalarda hastalıksız sağkalım süresinin tahmini için en önemli faktörler olduğu belirlendi.

Nonmetastatik meme kanserli hastalarda hastalıksız sağkalımın belirlenmesinde iki farklı prognostik indeksin geliştirilmesi ve kıyaslanması

Aim: To determine 2 diff erent prognostic indexes (PI) for the diff erentiation of subgroups of nonmetastatic breast cancer patients with the Cox regression analysis and survival tree (ST) methods and the additional usage of the Kaplan- Meier estimates to investigate the predictive power of these methods. Materials and methods: Prognostic factors data were collected for 410 patients. Th e Cox regression analysis examines the relationship of the survival distribution and covariates. Th e ST method is a tree-structured survival analysis based on a recursive partitioning algorithm. In this study, Harrell’s concordance indexes of models for training and test sets were computed. Furthermore, survival curves were estimated by the Kaplan-Meier method. Disease-free survival (DFS) was calculated from the time of initial diagnosis (initiation of the fi rst treatment) to the fi rst recurrence of disease. Results: Aft er a median follow-up of 48 months, 100 (24.4%) patients have had at least 1 of the DFS events. In Cox regression analysis, we proposed the simple PI, which is a sum of axillary nodal and HER2/neu status. In the ST method, we identifi ed 3 variables: HER2/neu, axillary nodal, and estrogen receptor status. Th e axillary nodal status was the most important determining factor for recurrence. Conclusion: We found that the PI of the ST and Cox regression methods had similar performance levels in predicting DFS, and the error rates of the models were close to each other in the training and test sets. Furthermore, we determined that the axillary nodal status and HER2/neu were the most important determining factors for prediction of DFS in breast cancer patients.

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  • 1. Buchholz TA, Strom EA, McNeese MD. Th e breast. In: Cox JD, Ang KK, editors. Radiation oncology: Rationale, technique, results. St. Louis (MO): Mosby; 2003. p.333-86.
  • 2. Henson DE, Ries L, Freedman LS, Carriaga M. Relationship among outcome, stage of disease, and histologic grade for 22616 cases of breast cancer. The basis for a prognostic index. Cancer 1991; 68: 2142-49.
  • 3. Haybittle JL, Blamey RW, Elston CW, Johnson J, Doyle PJ, Campbell, FC et al. Prognostic index in primary breast cancer. Br J Cancer 1982; 45: 361-66.
  • 4. Aaltomaa S, Lipponen P, Eskelinen M, Kosma VM, Marin S, Alhava E et al. Predictive value of a morphometric prognostic index in female breast cancer. Oncology 1993; 50: 57-62.
  • 5. Sauerbrei W, Hübner K, Schmoor C, Schumacher M. Validation of existing and development of new prognostic classifi cation schemes in node negative breast cancer. German Breast Cancer Study Group. Breast Cancer Res Treat 1997; 42: 149-63.
  • 6. Cox DR. Regression models and life tables. J R Stat Soc Bull 1972; 34: 187-202.
  • 7. Berry MJA, Linoff G. Data mining technique: For marketing, sales and customer support. New York: Wiley; 1997.
  • 8. Faderl S, Keating MJ, Do KA, Liang SY, Kantarjian HM, O’Brien S et al. Expression profi le of 11 proteins and their prognostic signifi cance in patients with chronic lymphocytic leukemia (CLL). Leukemia 2002; 16: 1045-52.
  • 9. Kenneth RH, Abbruzzese MC, Lenzi R, Raber MN, Abbruzzese JL. Classifi cation and regression tree analysis of 1000 consecutive patients with unknown primary carcinoma. Clin Cancer Res 1999; 5: 3403-10.
  • 10. Allgayer H, Boyd DD, Heiss MM, Abdalla EK, Curley SA, Gallick GE. Activation of Src kinase in primary colorectal carcinoma: An indicator of poor clinical prognosis. Cancer 2002; 94: 344-51.
  • 11. Ture M, Tokatli F, Kurt Omurlu I. Th e comparisons of prognostic indexes using data mining techniques and Cox regression analysis in the breast cancer dat. Expert Systems with Applications 2009; 36: 8247-54.
  • 12. Lamborn KR, Chang SM, Prados MD. Prognostic factors for survival of patients with glioblastoma: Recursive partitioning analysis. Neuro-oncol 2004; 6: 227-35.
  • 13. Bloom HJG, Richardson WW. Histological grading and prognosis in breast cancer; a study of 1409 cases of which 359 have been followed for 15 years. Br J Cancer 1957; 11: 359-77.
  • 14. American Joint Committee on Cancer. AJCC cancer staging manual. Philadelphia (PA): Lippincott-Raven Publishers; 1997.
  • 15. Zhang D, Salto-Tellez M, Putti TC, Do E, Koay ES. Reliability of tissue microarrays in detecting protein expression and gene amplifi cation in breast cancer. Mod Pathol 2003; 16: 79-84.
  • 16. Zhang D, Salto-Tellez M, Do E, Putti TC, Koay ES. Evaluation of HER-2/neu oncogene status in breast tumors on tissue microarrays. Hum Pathol 2003; 34: 362-8.
  • 17. Paulett G, Godolphin W, Press MF, Slamon DJ. Detection and quantitation of HER-2/neu gene amplifi cation in human breast cancer archival material using fl uorescence in situ hybridization. Oncogene 1996; 13: 63-72.
  • 18. Breiman L, Friedman J, Stone CJ, Olshen RA. Classifi cation and regression trees. Pacifi c Grove (CA): Wadsworth & Brooks/ Cole Advanced Books & Soft ware; 1984.
  • 19. Venables WN, Ripley BD. Modern applied statistics with S-PLUS. 3rd ed. New York: Springer; 1999.
  • 20. Le Blanc M, Crowley J. Relative risk trees for censored survival data. Biometrics 1992; 48: 411-25.
  • 21. Harrell F, Califf R, Pryor D, Lee K, Rosati R. Evaluating the yield of medical tests. J Amer Med Assoc 1982; 247: 2543-46.
  • 22. Ishwaran H, Kogalur UB. Random survival forests for R. R News 2007; 7: 25-31.
  • 23. Kaplan EL, Meier P. Nonparametric estimation from incomplete observations. J Am Stat Assoc 1958; 53: 457-81.
  • 24. Utley M, Gallivan S, Young A, Cox N, Davies P, Dixey J et al. Potential bias in Kaplan-Meier survival analysis applied to rheumatology drug studies. Rheumatology 2000; 39: 1-2.
  • 25. Paik S, Shak S, Tang G, Kim C, Baker J, Cronin M et al. A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer. N Engl J Med 2004; 351: 2817-26.
  • 26. van de Vijver MJ, He YD, van’t Veer LJ, Dai H, Hart AA, Voskuil DW et al. A gene-expression signature as a predictor of survival in breast cancer. N Engl J Med 2002; 347: 1999-2009.
  • 27. Climent MA, Seguí MA, Peiró G, Molina R, Lerma E, Ojeda B et al. Prognostic value of HER-2/neu and p53 expression in node-positive breast cancer. HER-2/neu effect on adjuvant tamoxifen treatment. Breast 2001; 10: 67-77.
  • 28. Slamon DJ, Clark GM, Wong SG, Levin WJ, Ullrich A, McGuire WL. Human breast cancer: correlation of relapse and survival with amplifi cation of the HER-2/neu oncogene. Science 1987; 235: 177-82.
  • 29. Ross JS, Fletcher JA, Linette GP, Stec J, Clark E, Ayers M et al. The Her-2/neu gene and protein in breast cancer 2003: biomarker and target of therapy. Oncologist 2003; 8: 307-25.
  • 30. Balslev I, Axelsson CK, Zedeler K, Rasmussen BB, Carstensen B, Mouridsen HT. Th e Nottingham Prognostic Index applied to 9149 patients from the studies of the Danish Breast Cancer Cooperative Group (DBCG). Breast Cancer Res Treat 1994; 32: 281-90.
  • 31. Magidson J, SPSS Inc. SPSS for Windows CHAID, Release 6.0. Chicago: SPSS Inc.; 1993.
  • 32. Goldhirsch A, Glick JH, Gelber RD, Coates AS, Th ürlimann B, Senn HJ, panel members. Meeting highlights: international expert consensus on the primary therapy of early breast cancer 2005. Ann Oncol 2005; 16: 1569-83.
  • 33. Schoppmann SF, Bayer G, Aumayr K, Taucher S, Geleff S, Rudas M et al. Prognostic value of lymphangiogenesis and lymphovascular invasion in invasive breast cancer. Ann Surg 2004; 240: 306-12.
  • 34. Goldhirsch A, Wood WC, Gelber RD, Coates AS, Th ürlimann B, Senn HJ. Progress and promise: highlights of the international expert consensus on the primary therapy of early breast cancer 2007. Ann Oncol 2007; 18: 1133-44.
  • 35. Ture M, Tokatli F, Kurt I. Using Kaplan-Meier analysis together with decision tree methods (C&RT, CHAID, QUEST, C4.5 and ID3) in determining recurrence-free survival of breast cancer patients. Expert Systems with Applications 2009; 36: 2017-26.
Turkish Journal of Medical Sciences-Cover
  • ISSN: 1300-0144
  • Yayın Aralığı: Yılda 6 Sayı
  • Yayıncı: TÜBİTAK
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