Molecular phylogeny of Astragalus section Anthylloidei (Fabaceae) inferred from nrDNA ITS and plastid rpl32-trnL (UAG) sequence data

The phylogeny of Astragalus L. section Anthylloidei DC. and its interrelationship with allies were examined. The study was conducted using nrDNA ITS and plastid rpl32-trnL(UAG) sequences. Astragalus sect. Anthylloidei is nonmonophyletic, and its members are scattered across the tree in 4 well-supported clades and intermixed with members of other spiny sections. All the multispecific informal groups of the section, with the exception of A. murinus Boiss. group, are not monophyletic. Morphological character evolution was mapped on the molecular tree. Our results suggest that morphology cannot elucidate infrageneric relationships in spiny Astragalus accurately; analyzed characters have evolved several times in sect. Anthylloidei and, thus, show high levels of homoplasy. Distribution of members of the section matches, more or less, certain geographic patterns, ranging from the Zagros mountains, Northwest Iran and Eastern Turkey, Central Iran to Northeast Iran, and Turkmenistan and Afghanistan. A new taxonomic system for this group of species is needed. The present study suggests that sect. Halicacabus Bunge, which has been merged with sect. Anthylloidei, should be resurrected since 8 species, including A. halicacabus Lam; A. wagneri Bartl. ex Bunge; A. distans Fisch.; A. raswendicus Hausskn. & Bornm.; A. veiskaramii Zarre, Podlech & T.Sabaii; A. submitis Boiss. & Hohen.; and A. chardinii Boiss. (sect. Anthylloidei) as well as A. semnanensis Bornm. & Rech. f. (sect. Semnanenses Podlech & Zarre), form a distinct clade. Sect. Eriostoma Bornm. is a distinct lineage from sect. Anthylloidei.

Molecular phylogeny of Astragalus section Anthylloidei (Fabaceae) inferred from nrDNA ITS and plastid rpl32-trnL (UAG) sequence data

The phylogeny of Astragalus L. section Anthylloidei DC. and its interrelationship with allies were examined. The study was conducted using nrDNA ITS and plastid rpl32-trnL(UAG) sequences. Astragalus sect. Anthylloidei is nonmonophyletic, and its members are scattered across the tree in 4 well-supported clades and intermixed with members of other spiny sections. All the multispecific informal groups of the section, with the exception of A. murinus Boiss. group, are not monophyletic. Morphological character evolution was mapped on the molecular tree. Our results suggest that morphology cannot elucidate infrageneric relationships in spiny Astragalus accurately; analyzed characters have evolved several times in sect. Anthylloidei and, thus, show high levels of homoplasy. Distribution of members of the section matches, more or less, certain geographic patterns, ranging from the Zagros mountains, Northwest Iran and Eastern Turkey, Central Iran to Northeast Iran, and Turkmenistan and Afghanistan. A new taxonomic system for this group of species is needed. The present study suggests that sect. Halicacabus Bunge, which has been merged with sect. Anthylloidei, should be resurrected since 8 species, including A. halicacabus Lam; A. wagneri Bartl. ex Bunge; A. distans Fisch.; A. raswendicus Hausskn. & Bornm.; A. veiskaramii Zarre, Podlech & T.Sabaii; A. submitis Boiss. & Hohen.; and A. chardinii Boiss. (sect. Anthylloidei) as well as A. semnanensis Bornm. & Rech. f. (sect. Semnanenses Podlech & Zarre), form a distinct clade. Sect. Eriostoma Bornm. is a distinct lineage from sect. Anthylloidei.

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  • Baldwin BG, Sanderson MJ, Porter JM, Wojciechowski MF, Campbell CS, Donoghue MJ (1995). The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Ann Missouri Bot Gard 82: 247–277.
  • Bartha L, Dragoş N, Molnár AV, Sramkó G (2013). Molecular evidence for reticulate speciation in Astragalus (Fabaceae) as revealed by a case study from section Dissitiflori. Botany 91: 702–714.
  • Boissier E (1872). Flora Orientalis, vol. 2, Genevae and Basileae Lugduni.
  • Bunge A (1868). Generis Astragali species Gerontogeae. Pars prior. Claves diagnosticae. Mem Acad Imp Sci St Petersbourg 11: 1–140.
  • Bunge A (1869). Generis Astragali species Gerontogeae. Pars altera. Specie rumenume ratio. diagnosticae. Mem Acad Imp Sci St Petersbourg 15: 1–245.
  • Chamberlin DF, Matthews VA (1970). Astragalus. In: Davis PH, Chamberlin DF, Matthews VA, editors. Flora of Turkey and the East Aegean Islands, vol. 3. Edinburgh, UK: Edinburgh University Press, pp. 49–254.
  • Cunningham CW (1997). Can three incongruence tests predict when data should be combined? Mol Biol Evol 14: 733–740. De Candolle AP (1825). Prodromus Systematis Naturalis Regni Vegetabilis. vol. 2. Paris, Strasbourg, London, pp. 300–301.
  • Dong W, Liu J, Yu J, Wang L, Zhou S (2012). Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding. PLoS ONE 7: e35071.
  • Douzery E, Pridgeon A, Kores P, Linder HP, Kurzweil H, Chase M (1999). Molecular phylogenetics of Diseae (Orchidaceae): a contribution from nuclear ribosomal ITS sequences. Am J Bot 86: 887–89.
  • Doyle JJ, Doyle JL (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11–15.
  • Edgar RC (2004). Muscle: multiple sequence alignment with high accuracy and high throughput. Nucl Acids Res 32: 1792–1797.
  • Farris JS, Kallersjo M, Kluge AG, Bult C (1995). Testing significance of incongruence. Cladistics 10: 315–319.
  • Felsenstein J (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783–791.
  • Gontscharov NF, Borissova AG, Gorschkova SG, Popov MG, Vassilczenko IT (1965). Leguminosae: Astragalus. In: Komarov VL, Shishkin BK, editors. Flora of the U.S.S.R, vol. 12. Washington, DC, USA: Smithsonian Institution and the National Science Foundation, pp. 1–918.
  • Hall TA (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucl Acids Symp Ser 41: 95–98.
  • Holmgren PK, Holmgren NH (1998) onward (continuously updated). Index Herbariorum. New York Botanical Garden. Website: http://sciweb.nybg.org/science2/Index Herbariorum. asp [accessed 20 07 2013].
  • İpek M, İpek A, Simon P (2014). Testing the utility of matK and ITS DNA regions for discrimination of Allium species. Turk J Bot 38: 203–212.
  • Javanmardi F, Kazempour Osaloo S, Maassoumi AA, Nejadsattari T (2012). Molecular Phylogeny of Astragalus sec. Alopcoroidei (Fabaceae) and its allies based on nrDNA ITS and three cpDNAs, matK, trnT-trnY and trnH-psbA sequences. Biochem Syst Ecol 45: 171–178.
  • Kazempour Osaloo S, Maassoumi AA, Murakami N (2003). Molecular systematics of the genus Astragalus L. (Fabaceae): phylogenetic analyses of nuclear ribosomal DNA internal transcribed spacers and chloroplast gene ndhF sequences. Plant Syst Evol 242: 1–32.
  • Kazempour Osaloo S, Maassoumi AA, Murakami N (2005). Molecular systematics of the Old World Astragalus (Fabaceae) as inferred from nrDNA ITS sequence data. Brittonia 57: 367– 381.
  • Lavin M, Doyle JJ, Palmer JD (1990). Evolutionary significance of the loss of the chloroplast-DNA inverted repeat in the Leguminosae subfamily Papilionoideae. Evolution 44: 390–402.
  • Maassoumi AA (1994). Additions to the genus Astragalus (Papilionaceae) in Iran. Iran J Bot 6: 197–214.
  • Maassoumi AA (1995). The genus Astragalus in Iran, vol. 3. Perennials. Tehran, Iran: Research Institute of Forests and Rangeland, technical publication no. 1995-133.
  • Maassoumi AA (1998). Astragalus in the Old World, check-list. Tehran, Iran: Research Institute of Forests and Rangeland, technical publication no. 1998-194.
  • Maassoumi AA (2000). The genus Astragalus in Iran, vol. 4. Perennials. Tehran, Iran: Research Institute of Forests and Rangeland, technical publication no. 2000-228.
  • Maassoumi AA (2014). Flora of Iran, Papilionaceae (Astragalus II), no. 77. Tehran, Iran: Research Institute of Forests and Rangeland.
  • Maddison WP, Maddison DR (2011). Mesquite: a modular system for evolutionary analysis. Version 2.75. Website: http:// mesquiteproject.org [accessed 20 07 2013].
  • Nylander JAA (2004). MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Sweden.
  • Page DM (2001). TreeView (Win32) version 1.6.6. Website: http:// taxonomy.zoology.gla.ac.uk/rod/treeview.html [accessed 03 09 2001].
  • Podlech D (1982). Neue Aspektezur Evolution und Gliederung der Gattung Astragalus L. Mitt. Bot. Staatssamml. München 18: 359–378.
  • Podlech D, Zarre SH, Maassoumi AA (2001). Papilionaceae IV: Astragalus II. In: Rechinger KH, editor. Flora Iranica, no. 175. Graz, Austria: Akademische Druck-u. Verlagsanstalt.
  • Podlech D, Zarre SH (2013). Taxonomic Revision of the Genus Astragalus L. (Leguminosae) in the Old World, vol. II. Vienna, Austria: Naturhistorischen Museum Wien.
  • Posada D, Buckley TR (2004). Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Sys Biol 53: 793–808.
  • Rambaut A, Drummond A (2009). MCMC Trace Analysis Tool version v1.5.0. Institute of Evolutionary Biology, University of Edinburgh. Website: http://beast.bio.ed.ac.uk/Tracer [accessed 16 1 2011].
  • Rechinger (1940). Plantae Novae Iranicae, II. Repert Spec Nov Regni Veg 48: 123–168. Ronquist F, Huelsenbeck JP (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1–210.
  • Sabaii T, Zarre SH, Podlech D (2007). Two new species of Astragalus sect. Anthyloidei (Fabaceae). Willdenowia 37: 297–304.
  • Sanderson MJ, Liston A (1995). Molecular phylogenetic systematics of Galegeae, with special reference to Astragalus. In: Crisp M, Doyle JJ, editors. Advances in Legume Systematics 7: Phylogeny. Kew, UK: Royal Botanical Gardens, pp. 331–350.
  • Sanderson MJ, Wojciechowski MF (1996). Diversification rates in a temperate legume clade: are there so many species of Astragalus (Fabaceae). Am J Bot 83: 1488–1502.
  • Sang T, Crawford DJ, Stuessy T (1995). Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: implication for biogeography and concerted evolution. Proc Natl Acad Sci USA 92: 6813–6817.
  • Shaw J, Lickey EB, Schilling EE, Small RL (2007). Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in Angiosperms: the tortoise and the hare III. Am J Bot 94: 275–288.
  • Silvestro D, Michalak I (2011). raxmlGUI: a graphical front-end for RAxML. Org Divers Evol 12: 335–337.
  • Swofford DL (2002). PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods), version 4.0b10. Sunderland, MA, USA: Sinauer Associates, Inc. Publishers.
  • Taşcı Margoz N, Yüzbaşıoğlu İS, Çelen Z, Ekim T, Bilgin AN (2013). Molecular phylogeny of Galanthus (Amaryllidaceae) of Anatolia inferred from multiple nuclear and chloroplast DNA regions. Turk J Bot 37: 993–1007.
  • Tietz S, Zarre SH (1994). Revision von Astragalus L. sect. Megalocystis Bunge (Fabaceae). Sendtnera 2: 287–364.
  • White TJ, Bruns T, Lee S, Taylor J (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M, Gelfand D, Sninsky J, White T, editors. PCR Protocols: A Guide to Methods and Applications. San Diego, CA, USA: Academic Press, pp. 315–322.
  • Wojciechowski MF, Sanderson MJ, Hu JM (1999). Evidence on the monophyly of Astragalus (Fabaceae) and its major subgroups based on nuclear ribosomal DNA ITS and chloroplast DNA trnL intron data. Syst Bot 24: 409–437.
  • Wojciechowski MF, Sanderson MJ, Steele KP, Liston A (2000). Molecular phylogeny of the ‘temperate herbaceous tribes’ of papilionoid legumes: a supertree approach. In: Herendeen PS, Bruneau A, editors. Advances in Legume Systematics, part 9. Kew, UK: Royal Botanical Gardens, pp. 277–298.
  • Wojciechowski MF, Lavin M, Sanderson MJ (2004). A phylogeny of legumes (Leguminosae) based on analysis of the plastid matK gene resolves many well-supported subclades within the family. Am J Bot 91: 1846–1862.
  • Wojciechowski MF (2005). Astragalus (Fabaceae): a molecular phylogenetic perspective. Brittonia 57: 382–396.
  • Zarre SH (2000). Systematic revision of Astragalus L. sect. Adiaspastus, sect. Macrophyllium and sect. Pterophorus (Fabaceae). Englera 18: 1–21.
  • Zarre SH (2003). Hair micromorphology and its phylogenetic application in thorny species of Astragalus (Fabaceae). Bot J Linn Soc 143: 323–330.
  • Zarre SH, Podlech D (2001a). Astragalus sect. Semnanenses (Fabaceae): a new monotypic section from Iran. Nord J Bot 21: 485–491.
  • Zarre SH, Podlech D (2001b). Taxonomic revision of Astragalus sect. Acanthophace (Fabaceae). Sendtnera 7: 233–255.
  • Zwickl D (2006). Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. PhD thesis. Austin, TX, USA: University of Texas at Austin.
Turkish Journal of Botany-Cover
  • ISSN: 1300-008X
  • Yayın Aralığı: Yılda 6 Sayı
  • Yayıncı: TÜBİTAK
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