Identification of chromosomal regions in the genetic control of quality traits in durum wheat (Triticum turgidum L.) from the Fertile Crescent
Identification of chromosomal regions in the genetic control of quality traits in durum wheat (Triticum turgidum L.) from the Fertile Crescent
Durum wheat genetic resources from Turkey and Syria are expected to harbor novel alleles for most traits that are of interestto breeders and consumers. However, there have not been sufficient efforts to investigate the genetic structure of this gene pool. In thisstudy, cultivar Kunduru-1149 (selected from one of the unique landraces, Kunduru) from Anatolia was crossed with a Syrian cultivar,Cham1, to produce recombinant inbred lines (RILs) for quantitative trait locus (QTL) analysis. The RIL population was genotypedwith simple sequence repeats, amplified fragment length polymorphism, and seed storage protein markers and analyzed for 9 differentimportant quality traits of durum wheat in 8 different environments in Turkey, Syria, and Lebanon. We identified 59 QTLs of variousquality and rheology traits using single-marker analysis. Some of the QTLs were also reported in earlier studies; however, new majorQTLs were also identified in our QTL mapping population. In future studies, after validation, the markers linked with these QTLs canbe used in marker-assisted durum wheat breeding.
___
- AACC International (1995). Approved Methods of Analysis Method
39-11. Grain Protein Contents by Near-infrared Reflectance
(NIR System Model 5000 Scanning Monochromatic) Method.
St. Paul, MN, USA: AACC International.
- AACC International (1999). Approved Methods of Analysis Method
14-50. Yellow Pigment Estimation Method. St. Paul, MN, USA:
AACC International.
- AACC International (2000). Approved Methods of Analysis Method
55-10. Test Weight Method. St. Paul, MN, USA: AACC
International.
Alsaleh A, Baloch FS, Derya M, Azrak M, Kilian B, Nachit MM,
Ozkan H (2015). Genetic linkage map of Anatolian durum
wheat derived from a cross of Kunduru- 1149 × Cham1. Plant
Mol Biol Rep 33: 209-220.
- Alsaleh A, Baloch FS, Nachit M, Özkan H (2016). Phenotypic and
genotypic intra-diversity among Anatolian durum wheat
“Kunduru” landraces. Biochem Syst Ecol 65: 9-16.
- Alvarez JB, Martin A, Martin LM (1999). Allelic variation of
the D-prolamin subunits encoded at the Hch genome in a
collection of primary hexaploid tritordeums. Theor Appl
Genet 99: 296-299.
- Baloch FS, Alsaleh A, Andeden EE, Derya M, Hatipoğlu R, Nachit
M, Özkan H (2016). High levels of segregation distortion in the
molecular linkage map of bread wheat representing the West
Asia and North Africa region. Turk J Agric For 40: 352-364.
- Baloch FS, Alsaleh A, Shahid MQ, Çiftçi V, de Miera LES, Aasim
M, Nadeem A, Aktaş H, Özkan H, Hatipoğlu R (2017). A
whole genome DArTseq and SNP analysis for genetic diversity
assessment in durum wheat from central Fertile Crescent. PLoS
One 12: e0167821.
- Beecher BS, Carter AH, See DR (2012). Genetic mapping of new
seed-expressed polyphenol oxidase genes in wheat (Triticum
aestivum L). Theor Appl Genet 124: 1463-1473.
- Blanco A, Colasuonno P, Gadaleta A, Mangini G, Schiavulli A,
Simeone R, Digesù AM, Vita PD, Mastrangelo AM, Cattivelli L
(2011). Quantitative trait loci for yellow pigment concentration
and individual carotenoid compounds in durum wheat. J
Cereal Sci 54: 255-264.
- Cömertpay G, Habyarimana E, Baloch FS, Güngör H, Dokuyucu T,
Akkaya A, Dumlupinar Z (2019). Geographical description and
molecular characterization of genetic structure and diversity
using 6K SNP Array in Turkish oat germplasm. Can J Plant Sci
99: 12-21.
- Conti V, Roncallo PF, Beaufort V, Cervigni GL, Miranda R, Jensen
CA, Echenique VC (2011). Mapping of main and epistatic effect
QTLs associated to grain protein and gluten strength using a
RIL population of durum wheat. Theor Appl Genet 52: 287-98.
- Deng Z, Hu S, Zheng F, Chen J, Zhang X, Chen J, Sun C, Zhang Y,
Wang S, Tian J (2013). Genetic dissection reveals effects of
interaction between high-molecular-weight glutenin subunits
and waxy alleles on dough-mixing properties in common
wheat. J Genet 92: 69-79.
- Du Cros DL (1987). Glutenin proteins and gluten strength in durum
wheat. J Cereal Sci 5: 3-12.
- Dupont FM, Altenbach SB (2003). Molecular and
biochemical impacts of environmental factors on
wheat grain development and protein synthesis.
J Cereal Sci 38: 133-146.
- Elouafi I, Nachit MM, Martin LM (2001). Identification of a
microsatellite on chromosome 7b showing a strong linkage
with yellow pigment in durum wheat Triticum turgidum L var
durum. Hereditas 135: 255-261.
- Federer WT (1956). Augmented designs. Hawaiian Plant Rec 55: 191-
208.
- Groos C, Robert N, Bervas E, Charmet G (2003). Genetic analysis of
grain protein content, grain yield and thousand-kernel weight
in bread wheat. Theor Appl Genet 106: 1032-1040.
- Houshmand S, Knox RE, Clarke FR, Clarke JM, Pozniak CP (2008).
Quantitative Trait Loci Associated with Kernel Weight and Test
Weight in Durum Wheat. Sydney, Australia: Sydney University
Press.
- Huang XQ, Cloutier S, Lycar L (2006). Molecular detection of QTLs
for agronomic and quality traits in a doubled haploid population
derived from two Canadian wheats Triticum aestivum L. Theor
Appl Genet 113: 753-766.
- ICC (1992). Brabender, Method No. 115. Vienna, Austria:
International Association for Cereal Science and Technology
ITMI (1994). Wheat mapping workshop. In: McGuire PE, Qualset
CO, editors. Proceedings of 4th Public Workshop, San Diego,
CA, USA.
- Jin H, Wen W, Liu J, Zhai S, Zhang Y, Yan J, He Z (2016). Genomewide QTL mapping for wheat processing quality parameters
in a Gaocheng 8901/Zhoumai 16 recombinant inbred line
population. Front Plant Sci 7: 1032.
- Jing HC, Kornyukhin D, Kanyuka K, Orford S, Zlatska A,
Mitrofanova OP, Koebner R, Hammond-Kosack K (2007).
Identification of variation in adaptively important traits and
genome-wide analysis of trait–marker associations in Triticum
monococcum. J Exp Bot 58: 3749-764.
- Kumar A, Elias EM, Ghavami F, Xu X, Jain S, Manthey FA, Mergoum
M, Alamri MS, Kianian PMA, Kianian SF (2013). A major
QTL for gluten strength in durum wheat (Triticum turgidum L
var. durum). J. Cereal Sci 57: 21-29.
- Li F, Hasegawa Y, Saito M, Shirasawa S, Fukushima A, Ito T, Fujii
H, Kishitani S, Kitashiba H, Nishio T (2011). Extensive
chromosome homoeology among Brassiceae species were
revealed by comparative genetic mapping with high-density
EST-based SNP markers in radish (Raphanus sativus L). DNA
Res 18: 401-411.
- Li Y, Song Y, Zhou R, Branlard G, Jia J (2009). Detection of QTLs
for bread-making quality in wheat using a recombinant inbred
line population. Plant Breed 128: 235-243.
- Ma W, Appels R, Bekes F, Larroque O, Morell MK, Gale KR (2005).
Genetic characterisation of dough rheological properties in a
wheat doubled haploid population: additive genetic effects and
epistatic interactions. Theor Appl Genet 111: 410-422.
- Maccaferri M, Sanguineti MC, Corneti S, Araus O, Ben JA, Salem
M, Deambrogio JBE, Garcia Del Moral LF, Demontis A, ElAhmed A et al. (2008). Quantitative trait loci for grain yield
and adaptation of durum wheat (Triticum durum Desf.) across
a wide range of water availability. Genetics Society of America
178: 489-511.
- Mann G, Diffey S, Cullis B, Azanza F, Martin D, Kelly A, McIntyre
L, Schmidt A, Ma W, Nath Z (2009). Genetic control of
wheat quality: interactions between chromosomal regions
determining protein content and composition, dough rheology,
and sponge and dough baking properties. Theor Appl Genet
118: 1519-1537.
- Nachit M, Baum M, Impiglia A, Ketata H (1995). Studies on some
grain quality traits in durum wheat grown in Mediterranean
environments. In: Proceedings of the Seminar on Durum
Wheat Quality in the Mediterranean Regions, Zaragoza, Spain,
pp. 181-188.
- Nadeem MA, Habyarimana E, Çiftçi V, Nawaz MA, Karaköy T,
Comertpay G, Shahid MQ, Hatipoğlu R, Yeken MZ, Ali F et
al. (2018a). Characterization of genetic diversity in Turkish
common bean gene pool using phenotypic and whole-genome
DArTseq-generated silicoDArT marker information. PLoS
One 13: e0205363.
350
ALSALEH et al. / Turk
- Nadeem MA, Nawaz MA, Shahid MQ, Doğan Y, Comertpay G, Yıldız
M, Hatipoğlu R, Ahmad F, Alsaleh A, Labhane N et al. (2018b).
- DNA molecular markers in plant breeding: current status and
recent advancements in genomic selection and genome editing.
Biotechnol Biotechnol Equip 32: 261-285.
- Nelson JC (1997). QGENE: Software for marker based genomic
analysis and breeding. Mol Breed 3: 239-245.
- Olmos S, Diestelfeld A, Chicaiza O, Schatter AR, Fahima T, Echenique
V, Dubcovsky J (2003). Precise mapping of a locus affecting
grain protein content in durum wheat. Theor Appl Genet 107:
1243-1251.
- Patil RM, Oak MD, Tamhankar SA, Rao VS (2009). Molecular mapping
of QTLs for gluten strength as measured by sedimentation
volume and mixograph in durum wheat Triticum turgidum L
ssp durum. J Cereal Sci 49: 378-386.
- Patil RM, Oak MD, Tamhankar SA, Sourdille P, Rao S (2008). Mapping
and validation of a major QTL for yellow pigment content on
7AL in durum wheat Triticum turgidum L ssp durum. Mol
Breeding 21: 485-496.
- Pena RJ, Amaya A, Rajaram S, Mujeeb-Kazi A (1990). Variation
in quality characteristics associated with some spring 1B/1R
translocation wheats. J Cereal Sci 12: 105-112.
- Pogna N, Autran E, Mellini JC, Lafiandra FD, Feillet P (1990).
Chromosome 1B-encoded gliadins and glutenin subunits in
durum wheat: genetics and relationship to gluten strength. J
Cereal Sci 11: 15-34.
- Porceddu E (1995). Durum wheat quality in the Mediterranean
countries. In: Di Fonzo N, Kaan F, Nachit M, editors. Durum
Wheat Quality in the Mediterranean Region. Zaragoza, Spain:
CIHEAM, pp. 11-21.
- Prasad M, Kumar N, Kulwal PL, Röder M, Balyan HS, Dhaliwal
HS, Gupta PK (2003). QTL analysis for grain protein content
using SSR markers and validation studies using NILs in bread
wheat. Theor Appl Genet 106: 659-667.
- Roncallo P, Cervigni G, Jensen C, Miranda R, Carrera A, Helguera M,
Echenique V (2012). QTL analysis of main and epistatic effects
for flour color traits in durum wheat. Euphytica 185: 77-92.
- Roncallo P, Echenique V (2014). Identification of molecular markers
associated with yield and quality traits for Argentinean
durum wheat breeding programs. In: Porceddu E, Damania
AB, Qualset CO, editors. Proceedings of the International
Symposium on Genetics and Breeding of Durum Wheat.
Rome, Italy: CIHEAM, pp. 577-582.
- SAS Institute (2018). JMP Genomics, Version 9. Cary, NC, USA: SAS
Institute.
Séne M, Gallet T, Doré T (2001). Phenolic compounds in a Sahelian
sorghum (Sorghum bicolor) genotype (CE145-66). J Chem Ecol
27: 81-92.
- Singh A, Reimer S, Pozniak CJ, Clarke FR, Clarke JM, Knox RE,
Singh AK (2009). Allelic variation at Psy1-A1 and association
with yellow pigment in durum wheat grain. Theor Appl Genet
118: 1539-1548.
- Tkachuk R, Metlish VG (1980). Wheat cultivar identification by high
voltage gel electrophoresis. Ann Technol Agric 292: 207-212.
- Van Ooijen JW (2009). MapQTL 6, Software for the Mapping of
Quantitative Trait Loci in Experimental Populations of Diploid
Species. Wageningen, the Netherlands: Kyazma BV.
Vázquez-Laslop TNK, Tenney K, Bowman BJ (1996). Characterization
of a vacuolar protease in Neurospora crassa and the use of gene
RIPing to generate protease-deficient strains. J Biol Chem 271:
21944-21949.
- Zanke CD, Ling J, Plieske J, Kollers S, Ebmeyer E, Korzun V, Argillier
O, Stiewe G, Hinze M, Neumann K et al. (2014). Whole genome
association mapping of plant height in winter wheat (Triticum
aestivum L.) PLoS One 9: e113287.
- Zhang W, Dubcovsky J (2008). Association between allelic variation
at the Phytoene synthase 1 gene and yellow pigment content in
the wheat grain. Theor Appl Genet 116: 635-645.
- Zlatska AV, Shytikova YV, Kanyuka K, Hammond-Kosack K (2004).
Transfer of Genes Controlling of Agronomic Important Traits
from Artificial Hexaploid Wheat into Common Wheat Gene
Pool: Kyiv, Ukraine: Ukrainian Institute for Plant Varieties
Examination.