Genetic diversity among melon ( Cucumis melo L.) accessions revealed by morphological traits and ISSR markers

  The genetic relationships among 48 melon (Cucumis melo L.) genotypes collected from various parts of Azerbaijan were determined by comparing their phenotypic and molecular traits. Eleven agromorphological traits and 10 polymorphic inter-simple sequence repeat (ISSR) primers were used to define the genetic diversity. Principal component analysis grouped the agromorphological traits into the first four axes, describing 78% of the total variations. The highest genetic variation coefficient was found for yield per hectare (20.32%) and for fruit length (17.35%). Calculated heritability for yield was 0.96. The analysis of morphological traits grouped the accessions into four clusters. The 10 ISSR primers yielded 35 polymorphic alleles, representing 85.4% of all the amplified loci. The average genetic diversity index determined was 0.70. The highest and the lowest similarity indexes were equal to 0.97 and 0.36, respectively. The 48 accessions were grouped into 10 clusters based on ISSR markers. Correlation between distance matrices based on agromorphological traits and ISSR markers was not statistically significant (r = 0.012).

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  • Alp S, Ercisli S, Dogan H, Temim E, Leto A, Zia-Ul-Haq M, Hadziabulic A, Aladag H (2016). Chemical composition and antioxidant activity Ziziphora clinopodioides ecotypes from Turkey. Rom Biotech Lett 21: 11298-11303.
  • Dogan H, Ercisli S, Temim E, Hadziabulic A, Tosun M, Yilmaz SO, Zia-Ul-Haq M (2014). Diversity of chemical content and biological activity in flower buds of a wide number of wild grown caper ( Capparis ovate Desf.) genotypes from Turkey. C R Acad Bulg Sci 67: 1593-1600.
  • Doyle J, Doyle JL (1987). Genomic plant DNA preparation from fresh tissue-CTAB method. Phytochem Bull 19: 11-15.
  • Escribano S, Lázaro A (2009). Agro-morphological diversity of Spanish traditional melons ( Cucumis melo L.) of the Madrid provenance. Genet Resour Crop Evol 56: 481-497.
  • Eshghi R, Akhundova E (2010). Genetic diversity in hullers barley based on agro-morphological traits and RAPD markers and comparison with storage protein analysis. Afr J Agric Res 5: 97-107.
  • Falconer DS, Mackay TF, Frankham R (1996). Introduction to quantitative genetics (4th edn). Trends Genet 12: 280.
  • Frary A, Şığva HÖ, Tan A, Taşkın T, İnal A, Mutlu S, Haytaoğlu M, Doğanlar S (2013). Molecular genetic diversity in the Turkish national melon collection and selection of a preliminary core set. J Am Soc Hortic Sci 138: 50-56.
  • Hammer Ø, Harper DAT, Ryan PD (2001). PAST-Palaeontological Statistics. Version 1.89. Palaeontol Electron 4: 1-9.
  • Jain JR, Timsina B, Satyan KB, Manohar SH (2017). A comparative assessment of morphological and molecular diversity among Sechium edule (Jacq.) Sw. accessions in India. 3 Biotech 7: 106.
  • Johnson RA, Wichern DW (2002). Applied Multivariate Statistical Analysis (Vol. 5, No. 8). Upper Saddle River, NJ, USA: Prentice Hall.
  • Kaçar YA, Simsek O, Solmaz I, Sari N, Mendi YY (2012). Genetic diversity among melon accessions ( Cucumis melo L . ) from Turkey based on SSR markers. Genet Mol Res 11: 4622-4631.
  • Kamiloglu O, Ercisli S, Sengul M, Toplu C, Serce S (2009). Total phenolics and antioxidant activity of jujube ( Zizyphus jujube Mill.) genotypes selected from Turkey. Afr J Biotechnol 8: 303- 307.
  • Kerje T (2003). Descriptors for Melon: Cucumis melo L. Rome, Italy: International Plant Genetic Resources Institute.
  • Kumar A., Singh PK, Rai N, Bhaskar GP, Datta D (2014). Genetic diversity of French bean ( Phaseolus vulgaris L.) genotypes on the basis of morphological traits and molecular markers. Indian J Biotechnol 13: 207-213.
  • Mantel M (1967). The detection of disease clustering and a generalized regression approach. Cancer Res 27: 209-220.
  • McCreight JD, Staub JE, López-Sesé A, Chung SM (2004). Isozyme variation in Indian and Chinese melon ( Cucumis melo L.) germplasm collections. J Am Soc Hortic Sci 129: 811-818.
  • Monforte AJ, Garcia‐Mas J, Arús P (2003). Genetic variability in melon based on microsatellite variation. Plant Breeding 122: 153-157.
  • Nei M (1973). Analysis of gene diversity in subdivided population. P Natl Acad Sci USA 70: 3321-3323.
  • Parvathaneni RK, Natesan S, Devaraj AA, Muthuraja R, Venkatachalam R, Subramani AP, Laxmanan P (2011). Fingerprinting in cucumber and melon ( Cucumis spp.) genotypes using morphological and ISSR markers. J Crop Sci Biotechnol 14: 39-43.
  • Pech JC, Bernadac A, Bouzayen M, Latche A, Dogimont C, Pitrat M (2007). Melon. In: Nagata T, editor. Biotechnology in Agriculture and Forestry, Vol. 60. Berlin, Germany: Springer, pp. 209-240.
  • Sensoy S, Büyükalaca S, Abak K (2007). Evaluation of genetic diversity in Turkish melons ( Cucumis melo L.) based on phenotypic characters and RAPD markers. Genet Resour Crop Evol 54: 1351-1365.
  • Sestili S, Giardini A, Ficcadenti N (2011). Genetic diversity among Italian melon inodorus ( Cucumis melo L.) germplasm revealed by ISSR analysis and agronomic traits. Plant Genet Resour 9: 214-217.
  • Shamasbi FV, Dehestani A, Golkari S (2014). AFLP based genetic diversity assessment among Cucumis melo var. agrestis genotypes in Southern Caspian coastline. Int J Biosci 4: 54-61.
  • Solmaz İ, Aka Kaçar Y, Sarı N, Şimşek Ö (2016). Genetic diversity within Turkish watermelon [ Citrullus lanatus (Thunb.) Matsumura & Nakai] accessions revealed by SSR and SRAP markers. Turk J Agric For 40: 407-419.
  • Soltani F, Akashi Y, Kashi A, Zamani Z, Mostofi Y, Kato K (2010). Characterization of Iranian melon landraces of Cucumis melo L. groups Flexuosus and Dudaim by analysis of morphological characters and random amplified polymorphic DNA. Breeding Sci 60: 34-45.
  • Stepansky A, Kovalski I, Perl-Treves R (1999). Intraspecific classification of melons ( Cucumis melo L.) in view of their phenotypic and molecular variation. Plant Syst Evol 313-332.
  • Szamosi C, Solmaz I, Sari N, Bársony C (2010). Morphological evaluation and comparison of Hungarian and Turkish melon ( Cucumis melo L.) germplasm. Sci Hortic 124: 170-182.
  • Tosun M, Ercisli S, Karlidag H, Sengul M (2009). Characterization of red raspberry ( Rubus idaeus L.) genotypes for their physicochemical properties. J Food Sci 74: C575-C579.
  • Tzitzikas EN, Monforte AJ, Fatihi A, Kypriotakis Z, Iacovides TA, Ioannides IM, Kalaitzis P (2009). Genetic diversity and population structure of traditional Greek and Cypriot melon cultigens ( Cucumis melo L.) based on simple sequence repeat variability. HortScience 44: 1820-1824.