Yoğunluk Fonksiyonel Teorisi (DFT) ile 3-Cyano-7-hydroxycoumarin molekülünün Titreşim Frekansı ve Moleküler Yapısı Üzerine Teorik ve Deneysel Bir Çalışma
Bu çalışmada 3-siyano-7-hidroksikumarin (3C7HC) molekülünün geometrik yapısı ve titreşim spektrumu deneysel ve teorik olarak incelendi. Deneysel olarak 3C7HC molekülünün FT-IR (infrared) ve FT-R (Raman) spektrumu, sırasıyla 4000- 400 cm-1 ve 3500-100 cm-1 aralığında elde edildi. Teorik olarak, 3C7HC molekülünün iki muhtemel konfigürasyonuna göre optimize geometrik yapıları, titreşim spektrumları ve bunlara karşılık gelen atamalar, yoğunluk fonksiyon teori (DFT) ile B3LYP 6-311++G(d,p) temel parametreleri kullanılarak yapıldı. Analizlerde, 3C7HC molekülünün CS simetri özelliği kullanıldı. 3C7HC molekülünün deneysel ve hesaplanan verilerinin birbirleri ile oldukça uyumlu olduğu görüldü.
Experimental and Theoretical Investigation of Molecular Structure and Vibrational Frequencies of 3-Cyano-7-hydroxycoumarin by Density Functional Theory
In this research, geometrical structure and vibrational spectra of 3- cyano-7-hydroxycoumarin (3C7HC) were studied experimentally and theoretically. Experimentally, FT-IR (infrared) and FT-R (Raman) spectra of 3C7HC molecule were respectively obtained in the range of 4000-400 cm-1 and 3500-100 cm-1. Theoretically, the optimized geometric structures, vibrational spectra and corresponding assignments according to two possible configurations of the 3C7HC molecule were investigated using the density functional method (B3LYP) with 6- 311++G (d,p) basis set. When analyzes were performed, CS symmetry property of 3C7HC molecule was used. It was seen that the experimental and calculated data of the 3C7HC molecule were highly compatible with each other.
___
- Ucun, F., Güçlü, V., Sağlam, A. 2008. Ab initio Hartree-Fock and density functional theory study on molecular structures, energies, and vibrational frequencies of conformations of 2- hydroxy-3-nitropyridine and 3-hydroxy-2- nitropyridine. Spectrochimica Acta Part A, Molecular and Biomolecular Spectroscopy, 70(2008), 524-531.
- Colthup, N. B., Daly, L. H., Wiberly, S. E. 1990. Introduction to Infrared and Raman spectroscopy, Academic Press, New York.
- Vein, D. L., Colthup, N.B., Fateley, W.G., Grasselli, J. 1991. The Handbook of IR and Raman characteristic frequencies of organic molecules. Academic Press, New York.
- Socrates, G. 2004. Infrared and Raman characteristic group frequencies: tables and charts, Wiley.
- Smith, B. C. 1998. Infrared spectral interpretation: A Systematic Approach. CRC Press, Boca Raton, Florida.
- Du, X., Guo C., Hansell, E., Doyle, P. S., Caffrey, C. R., Holler, T. P., McKerrow , J. H., Cohen, F. E. 2002. Synthesis and structure-activity relationship study of potent trypanocidalthiosemicarbazone inhibitors of the trypanosomal cysteine protease cruzain. J. Med. Chem., 45(13) (2002), 2695-2707.
- Wilson, E.B., Decius, J.C., Cross, P.C. 1980. Molecular vibrations, Dover Pub., New York. [31] Varsanyi, G., Szoke S. 1969. Vibrational spectra of benzene derivatives. Academic press, New York.
- Vijayalakshmi, L., Parthasarathi, V., Varu, B., Shah, A. 2001. 3-Cyano-4-[2-(4-methyl¬thiophenyl)-ethenyl]-2H-1-benzo-pyran-2-one. Acta Crystallographica, E57 (2001), o436-438.
- Ueno, K. 1985. Structures of umbelliferone and 7-ethoxycoumarin. Acta Crystallographica, C41 (1985), 1786-1789.
- Young, D. C. 2001. Computional Chemistry. A Pratical Guide for Applying Techniques to RealWorld Problems, (Electronics). John Wiley & Sons, New York.
- Frish, A., Nielsen, A. B., Holder, A. J. 2001. Gauss View User Manual, Gaussian Inc. Pittsburg, PA.
- Frisch, M. J., Trucks, G. W., Schlegel, H.B., Scuseria, G. E., Robb, M.A., Cheeseman, J. R., Montgomery Jr, J. A., Vreven, T., Kudin, K. N., Burant, J. C., Millam, J. M., Iyengar, S. S., Tomasi, J., Barone, V., Mennucci, B., Cossi, M., Scalmani, G., Rega, N., Petersson, G. A., Nakatsuji, H., Hada, M., Ehara, M., Toyota, K., Fukuda, R., Hasegawa, J., Ishida, M., Nakajima, T., Honda, Y., Kitao, O., Nakai, H., Klene, M., Li, X.,Knox, J. E., Hratchian, H. P., Cross, J. B., C., Adamo, Jaramillo, J., Gomperts, R., Stratmann, R. E., Yazyev, O., Austin, A. J., Cammi, R., Pomelli, C., Ochterski, J. W., Ayala, P. Y., Morokuma K., Voth, G. A., Salvador, P., Dannenberg, J. J., Zakrzewski, V. G., Dapprich, S., Daniels, A. D., Strain, M. C., Farkas, O., Malick, D. K., Foresman, J.B., Ortiz, J.V., Cui, Q., Baboul, A.G., Foresman, J. B., Ortiz, J.V., Cui, Q., Baboul, A.G., Clifford, S., Rabuck, A.D., Raghavachari, K., Cioslowski, J., Stefanov, B. B., Liu, G., Liashenko, A., Piskorz, P., Komaromi, I., Martin, R. L., Fox, D. J., Keith, T., Al-Laham, M. A., Peng, C. Y., Nanayakkara, A., M. Challacombe, Gill, P. M. W., Johnson, B., Chen, W. Wong, M. W., Gonzalez, C., Pople, J. A. 2003. GAUSSIAN 03, Revision C.02, Gaussian Inc., Pittsburgh, PA.
- Moghanian, H., Mobinikhaledi, A., Monjezi, R. 2013. Synthesis, spectroscopy (vibrational, NMR and UV–vis) studies, HOMO–LUMO and NBO analysis of 8-formyl-7-hydroxy-4- methylcoumarin by ab initio calculations. Journal of Molecular Structure 1052(2013), 135-145.
- Joseph, L., Sajan, D., Reshmy, R., ArunSasi,B. S., Erdogdu, Y., Kurien Thomas, K. 2012. Vibrational spectra, structural conformations, scaled quantum chemical calculations and NBO analysis of 3-acetyl-7-methoxycoumarin. Spectrochimica Acta Part A, Molecular and Biomolecular Spectroscopy, 99 (2012) 234-247.
- Sarıkaya, E. K., Dereli, Ö.,Erdoğdu, Y., Güllüoğlu, M.T. 2012. Molecular structure and vibrational spectra of 7-Etoxycoumarin by density functional metohod. Jounal of Molecular Structure, 1049(2012) 220-226.
- Warde, U., Sekar N. 2017. Solvatochromicbenzo[h] coumarins: Synthesis, solvatochromism. Optical Materials Journal, 72 (2017), 346-358.
- Tonannavar, J., Yenagi, J., Sortur, V., Jadhav, V. B., Kulkarni, M. V. 2010. Vibrational spectra, normal modes, abinitio and DFT calculations for 6- Chloro- and 7-Chloro-4-bromomethylcoumarins. Spectrochimica Acta A, 77(2010), 351-358.
- Arjunan, V., Sakiladevi, S., Marchewka, M, K., Mohan, S. 2013. FTIR, FT-Raman, FT-NMR and quantum chemical investigations of 3- acetylcoumarin. Spectrochimica Acta A, Molecular and Biomolecular Spectroscopy, 109(2013), 79-89.
- Dereli, Ö., 2016. Molecular Structure and Spectral (FT-IR, Raman) Investigations of 3- Aminocoumarin. Optics and Spectroscopy Journal, 120(2016), 690-700.
- Sortur, V., Yenagi, J., Tonannavar, J., Jadhav, V. B., Kulkarni, M. V.. 2006. Fourier transform-infrared and Raman spectra, ab initio calculations and assignments for 6-methyl-4- bromomethylcoumarin. Spectrochimica Acta A, Molecular and Biomolecular Spectroscopy, 64(2006), 301-307.
- Sebastian, S., Sylvestre, S., Jayarajan, D., Amalanathan, M., Oudayakumar,K., Gnanapoongothai, T., Jayavarthanan, T. 2013. Molecular structure, normal coordinate analysis, harmonic vibrational frequencies, natural bond orbital, TD-DFT calculations and biological activity analysis of antioxidant drug 7- hydroxycoumarin. Spectrochimica Acta Part A, Molecular and Biomolecular Spectroscopy, 101(2013), 370-381.
- Udaya Sri, N., Chaitanya, K., Prasad, M. V. S., Veeraiah, V., Veeraiah, A. 2012. FT-IR, FT-Raman and UV–Vis spectra and DFT calculations of 3- cyano-4-methylcoumarin. SpectrochimcaActa Part A, Molecular and Biomolecular Spectroscopy, 97(2012), 728–736.
- Divyesh, P., Kumari, P., Patel, N. 2010. Synthesis characterization and biological avaluation of some thiazolidinone derivatives as antimicrobial agents. Journal of Chemical and Pharmaceutical Research, 2(5) (2010), 84-91.
- Zabrandik, M.1992. The production and application of fluorecent brightening agents. John Wiley & Sons, New York.
- Maheswara, M., Siddaiah, V., Damu, G. L., Rao, Y. K., Rao, C. V. 2006. A solvent-free synthesis of coumarins via Pechmann condensation using heterogeneous catalyst. Journal of Molecular Catalysis A Chemical, 255(2006), 49-52.
- KinzaAslam K., Khosa M. K., Jahan, N., Nosheen, S. 2010. Synthesis and applications of coumarin. Pakistan Journal of Pharmaceutical Science, 23(4) (2010), 449-454.
- Bhattacharyya, S. S., Paul, S., Mandal, S. K., Banerjee, A., Boujedaini, N., Khuda-Bukhsh, A. R. 2009. A synthetic coumarin (4-methyl-7 hydroxycoumarin) has anti-cancer potentials against DMBA-induced skin cancer in mice. European Journal of Pharmacology, 614(2009), 128-136.
- Timonen, J. M., Nieminen, R. M., Sareila, O., Goulas, A., Moilanen,L. J., Haukka, M., Vainiotalo, P., Moilanen, E., Aulaskari, P. H. 2011. Synthesis and anti-inflammatory effects of a series of novel 7-hydroxycoumarin derivatives. European Journal of Medicinal Chemistry, 46(2011), 3845- 3850
- Chattha, F. A., Munawar, M. A., Nisa, M., Ashraf, M., Kousar, S., Arshad, S. 2015. Potential antibacterial activity of coumarin and coumarin3-acetic acid derivatives. Pakistan Journal of Pharmaceutical Science, 28(3) (2015), 819-823.
- Anderson, D, M., Shelley, S., Crick, N., Buraglio, M. 2002. No effect of the novel antidiabetic agent nateglinide on the pharmacokinetics and anticoagulant properties of warfarin in healthy volunteers. J. Clin. Pharmacol., 42(12)(2002), 1358-1365.
- Daly, A. K. 2009. Pharmacogenomics of anticoagulants: steps toward personal dosage. Genome Med., 1(1), 10-14.
- Hwu, J. R., Singha, R., Hong, S. C., Chang, Y. H., Das, A. R., Vliegen, I., De Clercq, E., Neyts, J. 2008. Synthesis of new benzimidazole-coumarin conjugates as anti-hepatitis C virus agents. Antiviral Res., 77(2) (2008), 157-162.
- Satyanarayana, S. V., Sreevani, P., Sivakumar, A., Vijayakumar, V. 2008. Synthesis and antimicrobial activity of new Schiff bases containing coumarin moiety and their spectral characterization. Arkivoc, 17(2008), 221-233.
- Campos-Toimil, M., Orallo, F., Santana, L., Uriarte, E. 2002. Synthesis and vasorelaxant activity of new coumarin and furocoumarinderivatives. Bioorg. Med. Chem. Lett., 12(5) (2002), 783-786.
- Venugopala, K. N., Jayashree, B. S. 2008. Microwave-induced synthesis of Schiff bases of aminothiazolylbromocoumarins as antibacterials. Indian J. Pharm. Sci., 70(1) (2008), 88–91.
- Symeonidis, T., Chamilos, M., Hadjipavlou-Litina, D. J., Kallitsakis, M., Litinas, K. E. 2009. Synthesis of hydroxycoumarins and hydroxybenzo[f] or [h]coumarins as lipid peroxidation inhibitors. Bioorg. Med. Chem. Lett., 19(4) (2009), 1139-1142.