Investigation of genetic variation among Turkish populations ofAndricus lignicola using mitochondrial cytochrome b gene sequence data

Abstract: Genetic diversity and diversification of the Anatolian populations of Andricus lignicola (Hartig, 1840) (Hymenoptera: Cynipidae) were investigated using 433 base pairs of the mitochondrial cytochrome b gene. Eighteen distinct haplotypes from 15 populations were determined. Analyses indicated average haplotype and nucleotide diversity as 0.325 and 0.008, respectively. Phylogenetic analyses conducted through the application of maximum likelihood and maximum parsimony produced similar topologies with two major clade structures supported by high bootstrap values. Bayesian analysis produced more polytomies without major basal groupings of the haplotypes. Parsimony network analysis revealed four haplogroups, and the largest group comprised half of the haplotypes. Our preliminary ABGD analysis implied the presence of four hidden lineages with the possibility of a cryptic species complex within A. lignicola. Hierarchical F-statistics (AMOVA) for detecting partitioning of molecular variation supported the presence of a conspicuous amount of genetic differentiation among these four primary groups.

Investigation of genetic variation among Turkish populations ofAndricus lignicola using mitochondrial cytochrome b gene sequence data

Abstract: Genetic diversity and diversification of the Anatolian populations of Andricus lignicola (Hartig, 1840) (Hymenoptera: Cynipidae) were investigated using 433 base pairs of the mitochondrial cytochrome b gene. Eighteen distinct haplotypes from 15 populations were determined. Analyses indicated average haplotype and nucleotide diversity as 0.325 and 0.008, respectively. Phylogenetic analyses conducted through the application of maximum likelihood and maximum parsimony produced similar topologies with two major clade structures supported by high bootstrap values. Bayesian analysis produced more polytomies without major basal groupings of the haplotypes. Parsimony network analysis revealed four haplogroups, and the largest group comprised half of the haplotypes. Our preliminary ABGD analysis implied the presence of four hidden lineages with the possibility of a cryptic species complex within A. lignicola. Hierarchical F-statistics (AMOVA) for detecting partitioning of molecular variation supported the presence of a conspicuous amount of genetic differentiation among these four primary groups.

___

  • Arias CM, Brito MR, Francisco OF, Moretto G, De Oliveira FF, Silvestre D, Sheppard S (2006). Molecular markers as a tool for population and evolutionary studies of stingless bees. Apidologie 37: 259–274.
  • Atkinson RJ, Brown GS, Stone GN (2003). Skewed sex ratios and multiple founding in galls of the oak apple gallwasp Biorhiza pallida. Ecol Entomol 28: 14–24.
  • Avise JC (2000). Phylogeography: The History and Formation of Species. Cambridge, MA, USA: Harvard University Press.
  • Bailey R, Schönrogge K, Cook JM, Melika G, Csoka G, Thuroczy C, Stone GN (2009). Host niches and defensive extended phenotypes structure parasitoid wasp communities. PLoS Biology 7: 1–12.
  • Bandelt HJ, Forster P, Rohl A (1999). Median-joining for inferring intraspecific phylogenies. Mol Biol Evol 16: 37–48.
  • Brown WM, George MJR, Wilson AC (1979). Rapid evolution of animal mitochondrial DNA. Proc Natl Acad Sci USA. 76: 1967–1971.
  • Challis RJ, Mutun S, Nieves-Aldrey J-L, Preuss S, Rokas A, Aebi A, Sadeghi E, Tavakoli M, Stone GN (2007). Longitudinal range expansion and cryptic eastern species in the western Palaearctic oak gallwasp Andricus coriarius. Mol Ecol 16: 2103–2114.
  • Chao A (1984). Nonparametric estimation of the number of classes in a population. Scand J Statist 11: 265–270.
  • Çıplak B (2008). The analogy between interglacial and global warming for the glacial relicts in a refugium: a biogeographic perspective for conservation of Anatolian Orthoptera. In: Fattorini S, editor. Insect Ecology and Conservation. Kerela, India: Research Sign Post, pp. 135–163.
  • Clement M, Posada D, Crandall KA (2000). TCS: a computer program to estimate gene genealogies. Mol Ecol 9: 1657–1660.
  • Cook JM, Rokas A, Pagel M, Stone GN (2002). Evolutionary shifts between host oak sections and host-plant organs in Andricus gallwasps. Evolution 56: 18.
  • Crandall KA, Templeton AR (1993). Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics 134: 959–969.
  • Demirsoy A (2008). Genel Zoocoğrafya ve Türkiye Zoocoğrafyası ‘Hayvan Coğrafyası’. 7th ed. Ankara, Turkey: Meteksan (in Turkish).
  • Dinç S, Mutun S (2011). PCR-RFLP variation of the oak gallwasp, Andricus quercustozae (Bosc, 1792) (Hymenoptera: Cynipidae) from Turkey. Turk J Entom 35: 47–58.
  • Excoffier L, Laval G, Schneider S (2005). Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1: 47–50.
  • Fu Y-X, Li W-H (1993). Statistical tests of neutrality of mutations. Genetics 133: 693–709.
  • Gebiola M, Lopez-Vaamonde C, Nappo AG, Bernardo U (2014). Did the parasitoid Pnigalio mediterraneus (Hymenoptera: Eulophidae) track the invasion of the horse chestnut leafminer? Biol Invasions 16: 843–857.
  • Hall TA (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucl Acids Symp Ser 41: 95–98.
  • Hasegawa M, Kishino H, Yano T (1985). Dating of human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22: 160–174.
  • Hayward A, Stone GN (2006). Comparative phylogeography across two trophic levels: the oak gall wasp Andricus kollari and its chalcid parasitoid Megastigmus stigmatizans. Mol Ecol 15: 479–489.
  • Hewitt GM (2004). The structure of biodiversity – insights from molecular phylogeography. Front Zool 1: 1–16.
  • Hickerson MJ, Carstens BC, Cavender-Bares J, Crandall KA, Graham CH, Johnson JB, Rissler L, Victoriano PF, Yoder AD (2010). Phylogeography’s past, present, and future: 10 years after Avise, 2000. Mol Phylogenet Evol 54: 291–301.
  • Huelsenbeck JP, Ronquist F (2001). MrBayes: Bayesian inference of phylogeny. Bioinformatics 17: 754–755.
  • Jermin LS, Crozier RH (1994). The cytochrome b region in the mitochondrial DNA of the ant Tetraponera rufoniger—a sequence divergence in Hymenoptera may be associated with nucleotide content. J Mol Evol 38: 282–294.
  • Kalinoswski ST (2004). Counting alleles with rarefaction: private alleles and hierarchical sampling designs. Conserv Genet 5: 539–543.
  • Kekeçoğlu M, Soysal İM (2010). Genetic diversity of bee ecotypes in Turkey and evidence for geographical differences. Rom Biotech Lett 15: 5646–5653.
  • Kyriazi P, Poulakakis N, Parmakelis A, Crochet PA, Moravec J, Rastegar-Pouyani N, Trsigenopoulos CS, Magoulas A, Mylonas M, Lymberakis P (2008). Mitochondrial DNA reveals the genealogical history of the snake-eyed lizards (Ophisops elegans and O. occidentalis) (Sauria: Lacertidae). Mol Phylogenet Evol 49: 795–805.
  • Leasi F, Norenburg JL (2014). The necessity of DNA taxonomy to reveal cryptic diversity and spatial distribution of meiofauna, with a focus on Nemertea. PLoS ONE 9: e104385.
  • Librado P, Rozas J (2009). DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451– 1452.
  • Loxdale HD, Lushai G (1998). Molecular markers in entomology. B Entomol Res 88: 577–600.
  • Melika G (2006). Gall wasps of Ukraine: Cynipidae. Kyiv, Ukraine: Vestnik Zoologii.
  • Mutun S (2010). Intraspecific genetic variation and the phylogeography of the oak gallwasp Andricus caputmedusae (Hymenoptera: Cynipidae): effects of the Anatolian Diagonal. Acta Zool Acad Sci H 56: 153–172.
  • Mutun S (2011). Intraspecific genetic diversity and phylogeography of the oak gall wasp Andricus lucidus (Hymenoptera: Cynipidae) populations in Anatolia. Turk J Zool 35: 559–570.
  • Nguyen TTT, Ingram B, Sungan S, Gooley G, Sim SY, Tinggi D, De Silva SS (2006). Mitochondrial DNA diversity of brood stock of two indigenous mahseer species, Tor tambroides and Tor dourenensis (Cyprinidae) cultured in Sarawak. Aquaculture 253: 259–269.
  • Posada D, Crandall KA (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817–818.
  • Posada D, Crandall KA (2001). Intraspecific gene genealogies: trees grafting into networks. Trends Ecol Evol 16: 37–45.
  • Posada D, Crandall KA, Templeton AR (2006). Nested clade analysis statistics. Mol Ecol 6: 590–593.
  • Puillandre N, Lambert A, Brouillet S, Achaz G (2012). ABGD, automatic barcode gap discovery for primary species delimitation. Mol Ecol 21: 1864–1877.
  • Pujade-Villar J, Bellido D, Segş G, Melika G (2001). Current state of knowledge of heterogeny in Cynipidae (Hymenoptera, Cynipoidea). Sessió Conjunta d’Entomologia de l’Institució Catalana d’História Natural i la Societat Catalana de Lepidopterologia, 11: 97–107.
  • Rokas A, Atkinson JR, Nieves-Aldrey J-L, West A, Stone GN (2002). The incidence and diversity of Wolbachia in gallwasps (Hymenoptera; Cynipidae) on oak. Mol Ecol 11: 1815–1829.
  • Rokas A, Atkinson RJ, Webster LMI, Csöka G, Stone GN (2003a). Out of Anatolia: longitudinal gradients in genetic diversity support an eastern origin for a circum-Mediterranean oak gallwasp Andricus quercustozae. Mol Ecol 12: 2153–2174.
  • Rokas A, Melika G, Abe Y, Nieves-Aldrey J-L, Cook JM, Stone GN (2003b). Lifecycle closure, lineage sorting, and hybridization revealed in a phylogenetic analysis of European oak gallwasps (Hymenoptera: Cynipidae: Cynipini) using mitochondrial sequence data. Mol Phylogenet Evol 26: 36–45.
  • Stone GN, Atkinson RJ, Brown G, Rokas A (2002). The population genetic consequences of range expansion: a review of pattern and process, and the value of oak gallwasps as a model system. Biodiversity Science 10: 80–97.
  • Stone GN, Challis RJ, Atkinson RJ, Csöka G, Hayward A, Melika G, Mutun S, Preuss S, Rokas A, Sadeghi E et al. (2007). The phylogeographical clade trade: tracing the impact of human- mediated dispersal on the colonization of northern Europe by the oak gall wasp Andricus kollari. Mol Ecol 16: 2768–2781.
  • Swofford DL (2002). PAUP*. Phylogenetic Analysis Using Parsimony. Sunderland, MA, USA: Sinauer Associates.
  • Tajima F (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585–595.
  • Tamura K, Dudley J, Nei M, Kumar S (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596–1599.
  • Templeton AR (1998). Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Mol Ecol 7: 381–397.
  • Walker P, Leather SR, Crawley MJ (2002). Differential rates of invasion in three related alien oak gall wasps (Cynipidae: Hymenoptera). Divers Distrib 8: 335–349.
  • Washburn JO, Cornell HV (1981). Parasitoids, patches, and phenology: their possible role in the local extinction of a cynipid gall wasp population. Ecology 62: 1597–1602.
  • Williams PH, An J, Brown MJF, Carolan JC, Goulson D, Jiaxing H, Masao I (2012). Cryptic bumblebee species: consequences for conservation and the trade in greenhouse pollinators. PLoS ONE 7: e32992.
  • Zhang XD, Hewitt MG (1996). Assessment of the universality and utility of a set of conserved mitochondrial COI primers in insects. Insect Mol Biol 6: 143–150.
Turkish Journal of Zoology-Cover
  • ISSN: 1300-0179
  • Yayın Aralığı: Yılda 6 Sayı
  • Yayıncı: TÜBİTAK
Sayıdaki Diğer Makaleler

Contributions to the genus Platystoma (Diptera: Platystomatidae) fauna of Turkey with seven new records

SEDA MESCİ, ABDULLAH HASBENLİ

The first recording of the threatened species, the European weather loach, Misg urnus f ossilis (Berg, 1949), in the diet of the pike

Thomas Oliver MERO

Distribution of two pine processionary moth species in Turkey evidences a contact zone

KAHRAMAN İPEKDAL, CHRISTIAN BURBAN, CAROLE KERDELHUE, SELİM SÜALP ÇAĞLAR

First record of facultative paedomorphism in the Kosswig's newt Lissotriton (vulgaris) kosswigi (Freytag, 1955) (Urodela; Salamandridae), endemic to northwestern Turkey

Kurtuluş OLGUN, Emin BOZKURT, Ben WIELSTRA

First record of facultative paedomorphism in the Kosswig's newt Lissotriton (vulgaris) kosswigi (Freytag, 1955) (Urodela; Salamandridae), endemic to northwestern Turkey

Emin BOZKURT, Kurtuluş OLGUN, Kurtuluş OLGUN, Ben WIELSTRA

Spider assemblages and dynamics on a seasonal island in the Pripyat River, Belarus

IZABELA HAJDAMOWICZ, LUCYNA PILACKA, WLODZIMIERZ MEISSNER

Broad-scale ecological distribution of dominant macrozoobenthic taxa of the northern Cilician shelf, eastern Mediterranean Sea: crustaceans

Erhan MUTLU

First record of facultative paedomorphism in the Kosswig's newt Lissotriton (vulgaris) kosswigi (Freytag, 1955) (Urodela; Salamandridae), endemic to northwestern Turkey

Emin BOZKURT, Kurtuluş OLGUN, Kurtuluş OLGUN, Ben WIELSTRA

A contribution to the Alysiinae of southeastern Iran, with description of the male of Chorebus longiarticulis

SHIMA GHOTBI RAVANDI, SEYED MASSOUD MADJDZADEH, Seyed Massoud MADJDZADEH, FRANCISCO JAVIER PERIS FELIPO, Francisco Javier PERIS FELIPO, MAJID ASKARI HESNI, EHSAN RAKHSHANI

Trichodinid fauna of freshwater fishes with infestation indices in the Lower Kızılırmak Delta in Turkey and a checklist of trichodinids(Ciliophora: Trichodinidae) in Turkish waters

AHMET ÖZER, TÜRKAY ÖZTÜRK