Study of mitochondrial DNA mtDNA D - loop region polymorphism in Şavak Akkaraman sheep

Öz This study was conducted to investigate the maternal genetic diversity using the mtDNA D - loop region 842 base pair bp polymorphism in Şavak Akkaraman sheep raised in the province of Erzincan. According to the results, in the mtDNA D - loop of the Şavak Akkaraman breed, 27 polymorphic sites and 20 haplotypes were identified and then, 11 of the 20 haplotypes identified in Şavak sheep were in haplogroup B 55% , 6 in haplogroup A 30% , and 3 in haplogroup C 15% . Haplogroup B was the most frequent haplogroup in Şavak Akkaraman sheep. Haplotype and nucleotide diversities were estimated to be 0.995 ± 0.004 and 0.0146 ± 0.0003, respectively. The Şavak Akkaraman breed was compared with the mtDNA sequencing of different breeds and wild sheep, and the contribution of the breed to biodiversity was considered.

Kaynakça

1. Ryder ML. Sheep. In: Evolution of Domesticated Animals. New York, USA: Longman; 1984. pp. 63-84.

2. Zeder MA. Domestication and early agriculture in the Mediterranean basin: origins, diffusion, and impact. Proceedings of the National Academy of Sciences of the United States of America 2008; 105 (33): 11597-11604.

3. Demirci S, Koban BE, Dağtaş ND, Pişkin E, Engin A et al. Mitochondrial DNA diversity of modern ancient and wild sheep (Ovis gmelinii anatolica) from Turkey: new insights on the evolutionary history of sheep. PLoS One 2013; 11:8 (12): e81952.

4. Rischkowsky B, Pilling D. The State of the World’s Animal Genetic Resources for Food and Agriculture. Rome, Italy: Food and Agriculture Organization of the United Nations; 2007.

5. Öner Y, Calvo JH, Elmacı C. Investigation of the genetic diversity among native Turkish sheep breeds using mtDNA polymorphisms. Tropical Animal Health and Production 2013; 45: 947-951.

6. Taberlet P, Coissac E, Pansu J, Pompanon F. Conservation genetics of cattle, sheep, and goats. Comptes Rendus Biologies 2011; 334: 247-254.

7. Soysal Mİ, Özkan E, Gürcan EK. The status of native farm animal genetic diversity in Turkey and in the world. Trakia Journal of Sciences 2003; 1 (3):1-12 (in Turkish).

8. Bruford MW, Brandley DG, Luikart G. DNA markers reveal the complexity of livestock domestication. Nature 2003; 4: 900- 910.

9. Hiendleder S, Lewalski H, Wassmuth R, Ke A. The complete mitochondrial DNA sequence of the domestic sheep (Ovis Aries) and comparison with the other major ovine haplotype. Journal of Molecular Evolution 1998; 47 (4): 441-448.

10. Pereira F, Pereira L, Van AB, Bradley Dg, Amorim A. The MtDNA catalogue of all Portuguese autochthonous goat (Capra Hircus) breeds: high diversity of female lineages at the Western fringe of European distribution. Molecular Ecology 2005; 14 (8): 2313-2318.

11. Tapio M, Marzanov N, Ozerov M, Ćinkulov M, Gonzarenko G et al. Sheep mitochondrial DNA variation in European, Caucasian and Central Asian areas. Molecular Biology and Evolution 2006; 23: 1776-1783.

12. Wood NJ, Phua SH. Variation in the control region sequence of the sheep mitochondrial genome. Animal Genetics 1996; 27: 25-33.

13. Pedrosa S, Uzun M, Arranz JJ, Gutierrez-Gil B, San PF et al. Evidence of three maternal lineages in near Eastern sheep supporting multiple domestication events. Proceedings Biology of the Society 2005; 272 (1577): 2211-2217.

14. Luo YZ, Cheng SR, Batsuuri L, Badamdorj D, Olivier H et al. Origin and genetic diversity of Mongolian and Chinese sheep using mitochondrial DNA D - Loop sequences. Yi Chuan Xue Bao 2005; 32 (12): 1256-1265.

15. Meadows JR, Cemal I, Karaca O, Gootwıne E, Kıjas JW. Five ovine mitochondrial lineages identified from sheep breeds of the near East. Genetics 2007; 175 (3): 1371-1379.

16. Meadows JR, Hiendleder S, Kijas JW. Haplogroup relationships between domestic and wild sheep resolved using a mitogenome panel. Heredity 2011; 106 (4): 700-706.

17. TÜİK. Hayvansal Üretim İstatistikleri. Ankara, Turkey: TÜİK; 2018 (in Turkish).

18. Akçapınar H. Koyun Yetiştiriciliği. 2nd ed. Ankara, Turkey: İsmat Matbaacılık; 2000 (in Turkish).

19. Kutlu M. Şavaklı Türkmenlerde Göçer Hayvancılık. Ankara, Turkey: The Ministry of Culture and Tourism; 1987 (in Turkish).

20. Ministry of Agriculture and Forestry. Hayvan Bilgi Sistemi (HAYBIS). Ankara, Turkey: Ministry of Agriculture and Forestry; 2018 (in Turkish).

21. Bodo I. Principles in use of live animals.Animal Genetic Resources. Strategies for Improved Use and Conservation. Rome, Italy: Food and Agriculture Organization; 1987. pp.191- 199.

22. Henson EL. In Situ Conservation of Livestock And Poultry. Rome, Italy: Food and Agriculture Organization Animal Production and Health Paper 99; 1992.

23. Ertuğrul M, Dellal G, Soysal IM, Elmacı C, Akın O et al. Türkiye yerli koyun ırklarının korunması. Uludağ Üniversitesi Ziraat Fakültesi Dergisi 2009; 23 (2): 97-119 (in Turkish).

24. Yağcı S. Şavak Akkaraman koyunlarının bazı morfolojik ve fizyolojik özellikleri ile moleküler filogenetik ilişkilerin belirlenmesi. PhD, Kahramanmaraş Sütçü İmam Üniversitesi, Kahramanmaraş, Turkey, 2017 (in Turkish).

25. Librado P, Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009; 25: 1451-1452.

26. Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 1980; 16: 111-120.

27. Tamura K, Dudley J, Nei M. Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution 2007; 24: 1596-1599.

28. Nei M, Kumar S. Molecular Evolution and Phylogenetics. Oxford, UK: Oxford University Press; 2000.

29. Pereira F, Davis SJ, Pereira L, Mcevoy B, Bradley DG et al. Genetic signatures of a Mediterranean influence in Iberian Peninsula sheep husbandry. Molecular Biology and Evolution 2006; 23 (7): 1420-1426.

30. Yüncü E, Koban E, Togan I. Mitochondrial DNA (mtDNA) haplogroup compositions of three native Turkish sheep breeds and their implications on the conservation studies. In: 31st International Society of Animal Genetics Conference; Netherlands; 2008.

31. Guangxin E, Yong- Ju Z, Ri -Su N, Yue - Hui M, Jia - Hua Z et al. Meta-analysis evidence of maternal lineages in Chinese Tibetan sheep using mtDNA D - loop panel. Mitochondrial DNA 2016. doi: 10.3109/24701394.2016.1143469

32. Zhao Y, Zhao E, Zhang N, Duan C. Mitochondrial DNA diversity, origin, and phylogenic relationships of three Chinese large – fat - tailed sheep breeds. Tropical Animal Health and Production 2011; 43: 1405-1410.

33. Liu J, Ding X, Zeng Y, Yue Y, Guo X et al. Genetic diversity and phylogenetic evolution of Tibetan sheep based on mtDNA D - loop sequences. PLoS One 2016; 11(7): e0159308. doi: 10.1371/ journal.pone.0159308

34. Koseniuk A, Słota E. Mitochondrial control region diversity in Polish sheep breeds. Archives Animal Breeding 2016; 59: 227- 233.

35. Alonso RA, Arvizu RU, Vazquez AG. Mitochondrial DNA sequence analysis of the Mexican Creole sheep (Ovis aries) reveals a narrow Iberian maternal origin. Mitochondrial DNA Part A, DNA Mapping, Sequencing, and Analysis 2017; 28 (6): 793-800.

36. Nigussie H, Mwacharo JM, Osama S, Agaba M, Mekasha Y et al. Genetic diversity and matrilineal genetic origin of fat - rumped sheep in Ethiopia. Tropical Animal Health and Production 2019. doi: 10.1007/s11250-019-01827 - z

37. Chen SY, Duan ZY, Sha T, Xiangyu J, Wu SFet al. Origin, genetic diversity, and population structure of Chinese domestic sheep. Gene 2006; 376 (2): 216-223.

Kaynak Göster

Bibtex @ { tbtkveterinary724451, journal = {Turkish Journal of Veterinary and Animal Sciences}, issn = {1300-0128}, eissn = {1303-6181}, address = {}, publisher = {TÜBİTAK}, year = {2020}, volume = {44}, pages = {323 - 330}, doi = {10.3906/vet-1905-57}, title = {Study of mitochondrial DNA mtDNA D - loop region polymorphism in Şavak Akkaraman sheep}, key = {cite}, author = {Yağcı, Serdar and Baş, Sinan and Kiraz, Selahaddin} }
APA Yağcı, S , Baş, S , Kiraz, S . (2020). Study of mitochondrial DNA mtDNA D - loop region polymorphism in Şavak Akkaraman sheep . Turkish Journal of Veterinary and Animal Sciences , 44 (2) , 323-330 . DOI: 10.3906/vet-1905-57
MLA Yağcı, S , Baş, S , Kiraz, S . "Study of mitochondrial DNA mtDNA D - loop region polymorphism in Şavak Akkaraman sheep" . Turkish Journal of Veterinary and Animal Sciences 44 (2020 ): 323-330 <https://dergipark.org.tr/tr/pub/tbtkveterinary/issue/53838/724451>
Chicago Yağcı, S , Baş, S , Kiraz, S . "Study of mitochondrial DNA mtDNA D - loop region polymorphism in Şavak Akkaraman sheep". Turkish Journal of Veterinary and Animal Sciences 44 (2020 ): 323-330
RIS TY - JOUR T1 - Study of mitochondrial DNA mtDNA D - loop region polymorphism in Şavak Akkaraman sheep AU - Serdar Yağcı , Sinan Baş , Selahaddin Kiraz Y1 - 2020 PY - 2020 N1 - doi: 10.3906/vet-1905-57 DO - 10.3906/vet-1905-57 T2 - Turkish Journal of Veterinary and Animal Sciences JF - Journal JO - JOR SP - 323 EP - 330 VL - 44 IS - 2 SN - 1300-0128-1303-6181 M3 - doi: 10.3906/vet-1905-57 UR - https://doi.org/10.3906/vet-1905-57 Y2 - 2021 ER -
EndNote %0 Turkish Journal of Veterinary and Animal Sciences Study of mitochondrial DNA mtDNA D - loop region polymorphism in Şavak Akkaraman sheep %A Serdar Yağcı , Sinan Baş , Selahaddin Kiraz %T Study of mitochondrial DNA mtDNA D - loop region polymorphism in Şavak Akkaraman sheep %D 2020 %J Turkish Journal of Veterinary and Animal Sciences %P 1300-0128-1303-6181 %V 44 %N 2 %R doi: 10.3906/vet-1905-57 %U 10.3906/vet-1905-57
ISNAD Yağcı, Serdar , Baş, Sinan , Kiraz, Selahaddin . "Study of mitochondrial DNA mtDNA D - loop region polymorphism in Şavak Akkaraman sheep". Turkish Journal of Veterinary and Animal Sciences 44 / 2 (Mart 2020): 323-330 . https://doi.org/10.3906/vet-1905-57
AMA Yağcı S , Baş S , Kiraz S . Study of mitochondrial DNA mtDNA D - loop region polymorphism in Şavak Akkaraman sheep. Turkish Journal of Veterinary and Animal Sciences. 2020; 44(2): 323-330.
Vancouver Yağcı S , Baş S , Kiraz S . Study of mitochondrial DNA mtDNA D - loop region polymorphism in Şavak Akkaraman sheep. Turkish Journal of Veterinary and Animal Sciences. 2020; 44(2): 323-330.
IEEE S. Yağcı , S. Baş ve S. Kiraz , "Study of mitochondrial DNA mtDNA D - loop region polymorphism in Şavak Akkaraman sheep", Turkish Journal of Veterinary and Animal Sciences, c. 44, sayı. 2, ss. 323-330, Mar. 2020, doi:10.3906/vet-1905-57

1694 1317

Arşiv
Sayıdaki Diğer Makaleler

The influence of vitamin C and early-age thermal conditioning on the quality of meat and specific production characteristics of broilers during heat stress

Zoran RUZIC, Zdenko KANACKI, Marıja JOKANOVIC, Suzana VIDAKOVIC, Slobodan KNEZEVIC, Slavoljub JOVIC, Smıljana PARAS

Arsenic, cadmium, mercury, and lead in date mussels from the Sarajevo fish market (Bosnia and Herzegovina): a preliminary study on the health risks

Elma OMERAGIC, Aleksandra MARJANOVIC, Jasmına DJEDJIBEGOVIC, Amıla TURALIC, Amır CAUSEVIC, Harıs NIKSIC, Faruk CAKLOVICA, Mıroslav SOBER

Polymorphism of the STAT5A and MYF-5 genes in Anatolian water buffalo

Fadime DALDABAN, Korhan ARSLAN, Esma Gamze AKSEL, Bilal AKYÜZ

Sheep welfare during transport and slaughter in Bulgaria - Impact of welfare on slaughter carcass and meat quality: a review

Nıkolay Todorov IVANOV

Ginkgo biloba extract EGB761 improved anti-heat stress responses in chickens in vivo via regulation of heat-shock protein expression and distribution

Xıaohuı ZHANG, Mıao ZHANG, Endong BAO

Detection of Trypanosoma evansi in camel abortions Camelus dromedarius in Iran using polymerase chain reaction

Mohammadreza NAZEM, Maryam KARIMIDEHKORDI, Mehran Farhoodı MOGHADAM

The effects of supplemental niacin and methionine on serum glucose, betahydroxybutyric acid, and non-esterified fatty acid levels during late gestation and early postpartum period in Damascus dairy goat

Mustafa Kemal SARIBAY, Ayşe Merve KÖSE, Bülent ÖZSOY, Umaır AHSAN, Ece Koldaş ÜRER, Serkan İrfan KÖSE, Gökhan DOĞRUER

Cranial size and shape sexual dimorphism in the Kangal dog from Turkey

Pere Mıquel PARÉS-CASANOVA, Abu Bakar SIDDIQ, Vedat ONAR

Salivary cortisol levels in horses and their junior riders during show jumping

Katarzyna STRZELEC, Slawomır PIETRZAK, Tomasz PRÓCHNIAK, Iwona JANCZAREK, Anna CYWINSKA, Andrzej BEREZNOWSKI

The effects of different doses of diclofenac sodium on newborn rat hippocampus exposed during the third trimester

Ebru ELİBOL, Süleyman KAPLAN, Gamze ALTUN, Abdurrahman AKSOY, Berrin Zuhal ALTUNKAYNAK