Highly informative SSR genotyping reveals large genetic diversity and limited differentiation in European larch ( Larix decidua ) populations from Romania

European larch (

___

  • A’Hara SW, Cottrell JE (2009). Development of a set of highly polymorphic genomic microsatellites (gSSRs) in Sitka spruce ( Picea sitchensis (Bong.) Carr.). Mol Breeding 23: 349-355.
  • Botstein D, White RL, Skolnick M, Davis RW (1980). Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32: 314-331.
  • Budeanu M, Petritan AM, Popescu F, Vasile D, Tudose NC (2016). The resistance of European beech ( Fagus sylvatica ) from the eastern natural limit of species to climate change. Not Bot Horti Agrobo 44: 625-633.
  • Carabeo M, Simeone MC, Cherubini M, Mattia C, Chiocchini F, Bertini L, Caruso C, La Mantia T, Villani F, Mattionia C (2016). Estimating the genetic diversity and structure of Quercus trojana Webb populations in Italy by SSRs: implications for management and conservation. Can J Forest Res 47: 331-339.
  • Chen XB, Xie YH, Sun XM (2015). Development and characterization of polymorphic genic-SSR markers in Larix kaempferi . Molecules 20: 6060-6067.
  • Doyle JJ, Doyle JL (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11-15.
  • Earl DA (2012). STRUCTURE HARVESTER: A website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv Genet Resour 4: 359-361.
  • Evanno G, Regnaut S, Goudet J (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14: 2611-2620.
  • Felsenstein J (2007). PHYLIP (Phylogeny Inference Package) Version 3.67. Seattle, WA, USA: Department of Genome Sciences, University of Washington. González‐Martínez SC, Krutovsky KV, Neale DB (2006). Forest‐tree population genomics and adaptive evolution. New Phytol 170: 227-238.
  • Guo SW, Thompson EA (1992). Performing the exact test of Hardy- Weinberg proportion for multiple alleles. Biometrics 48: 361- 372.
  • Hamrick JL (2004). Response of forest trees to global environmental changes. Forest Ecol Manag 197: 323-335.
  • Isoda K, Watanabe A (2006). Isolation and characterization of microsatellite loci from Larix kaempferi . Mol Ecol Resour 6: 664-666.
  • Kalia RK, Rai MK, Kalia S, Singh R, Dhawan AK (2011). Microsatellite markers: an overview of the recent progress in plants. Euphytica 177: 309-334.
  • Kharuk V, Ranson K, Dvinskaya M (2007). Evidence of evergreen conifer invasion into larch dominated forests during recent decades in central Siberia. Euras J Forest Res 10: 163-171.
  • Kremer A, Ronce O, Robledo‐Arnuncio JJ, Guillaume F, Bohrer G, Nathan R, Bridle, JR, Gomulkiewicz R, Klein EK, Ritland K et al. (2012). Long‐distance gene flow and adaptation of forest trees to rapid climate change. Ecol Lett 15: 378-392.
  • Leonarduzzi C, Spanu I, Labriola M, González-Martínez SC, Piotti A, Vendramin GG (2016). Development and characterization of three highly informative EST-SSR multiplexes for Pinus halepensis Mill. and their transferability to other Mediterranean pines. Plant Mol Biol Rep 34: 993-1002.
  • Lewandowski A, Burczyk J (2000). Mating system and genetic diversity in natural populations of European larch ( Larix decidua ) and stone pine ( Pinus cembra ) located at higher elevations. Silvae Genet 49: 158-160.
  • Liu K, Muse SV (2005). PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21: 2128-2129.
  • Maier J (1992). Genetic variation in European larch ( Larix decidua Mill). Ann Sci Forest 49: 39-47.
  • Marchal A, Muñoz F, Millier F, Sánchez L, Pâques LE (2017). Hybrid larch heterosis: for which traits and under which genetic control? Tree Genet Genomes 13: 92.
  • Martin MA, Mattioni C, Cherubini M, Taurchini D, Villani F (2010). Genetic diversity in European chestnut populations by means of genomic and genic microsatellite markers. Tree Genet Genomes 6: 735-744.
  • Matras J, Pâques L (2008). EUFORGEN Technical Guidelines for Genetic Conservation and Use for European Larch ( Larix decidua ). Rome, Italy: Bioversity International.
  • Matsuoka Y, Vigouroux Y, Goodman MM, Sanchez J, Buckler E, Doebley J (2002). A single domestication for maize shown by multilocus microsatellite genotyping. P Natl Acad Sci USA 99: 6080-6084.
  • Mihai G, Teodosiu M (2009). Genetic diversity and breeding of larch ( Larix decidua Mill.) in Romania. Ann For Res 52: 97-108.
  • Mosca E, Eckert AJ, Di Pierro EA, Rocchini D, La Porta N, Belletti P, Neale DB (2012). The geographical and environmental determinants of genetic diversity for four alpine conifers of the European Alps. Mol Ecol 21: 5530-5545.
  • Muñoz-Falcón JE, Vilanova S, Plazas M, Prohens J (2011). Diversity, relationships, and genetic fingerprinting of the Listada de Gandía eggplant landrace using genomic SSRs and EST- SSRs. Sci Hortic 129: 238-246.
  • Nardin M, Musch B, Rousselle Y, Guérin V, Sanchez L, Rossi JP, Gerber S, Marin S Pâques L, Rozenberg P (2015). Genetic differentiation of European larch along an altitudinal gradient in the French Alps. Ann For Sci 72: 517-527.
  • Nei M (1972). Genetic distance between populations. Am Nat 106: 283-292.
  • Nishimura M, Setoguchi H (2011). Homogeneous genetic structure and variation in tree architecture of Larix kaempferi along altitudinal gradients on Mt. Fuji. J Plant Res 124: 253-263.
  • Pandey MK, Gautami B, Jayakumar T, Sriswathi M, Upadhyaya HD, Gowda MVC, Radhakrishnan T, Bertioli D, Knapp SJ, Cook DR et al. (2012). Highly informative genic and genomic SSR markers to facilitate molecular breeding in cultivated groundnut ( Arachis hypogaea ). Plant Breeding 131: 139-147.
  • Peakall ROD, Smouse PE (2012). GENALEX 6: Genetic analysis in Excel. Population genetic software for teaching and research an update. Bioinformatics 28: 2537-2539.
  • Pluess AR (2011). Pursuing glacier retreat: genetic structure of a rapidly expanding Larix decidua population. Mol Ecol 20: 473- 485.
  • Pritchard JK, Stephens M, Donnelly P (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945- 959.
  • Reeves PA, Bowker CL, Fettig CE, Tembrock LR, Richards CM (2016). Effect of error and missing data on population structure inference using microsatellite data. Preprint. bioRxiv: 080630. Available online at https://www.biorxiv.org/content/ early/2016/10/13/080630.
  • Remington DL, Thornsberry JM, Matsuoka Y, Wilson LM, Whitt SR, Doebley J, Goodman MM, Buckler ES (2001). Structure of linkage disequilibrium and phenotypic associations in the maize genome. P Natl Acad Sci USA 98: 11479-11484.
  • Saitou N, Nei M (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
  • Shi YZ, Forneris N, Rajora OP (2014). Highly informative single- copy nuclear microsatellite DNA markers developed using an AFLP-SSR approach in black spruce ( Picea mariana ) and red spruce ( P. rubens ). PLoS One 9: e103789.
  • Tóth EG, Vendramin GG, Bagnoli F, Cseke K, Höhn M (2017). High genetic diversity and distinct origin of recently fragmented Scots pine ( Pinus sylvestris L.) populations along the Carpathians and the Pannonian Basin. Tree Genet Genomes 13: 47.
  • Torchik V (2010). Evaluation of an assortment of ornamental forms of conifers in central botanical garden of Belarus National Academy of Science. Acta Hortic 885: 375-381.
  • Vilcan A, Mihalte L, Sestras AF, Holonec L, Sestras RE (2017). Genetic variation and potential genetic resources of several Romanian larch populations. Turk J Agric For 41: 82-91.
  • Wagner S, Gerber S, Petit RJ (2012). Two highly informative dinucleotide SSR multiplexes for the conifer Larix decidua (European larch). Mol Ecol Resour 12: 717-725.
  • Wright S (1965). The interpretation of population structure by F‐ statistics with special regard to systems of mating. Evolution 19: 395-420.
  • Young AG, Boyle TJB (2000). Forest Conservation Genetics: Principles and Practice. Canberra, Australia: CSIRO Publishing.
  • Zhao G, Felber F, Kupfer P (2000). Genetic variation and differentiation of Larix decidua populations in Swiss Alps. Acta Bot Sin 43: 731-735.