Sularda, İnsan Enfeksiyonları ile İlişkili Norovirus Genogruplarının Real-Time PCR Yöntemi ile Saptanması

İnsan norovirüsü (HNoV), çevresel etkenlere oldukça dirençli bir RNA virüsüdür ve akut viral gastroenteritin nedeni olan ana etkenlerden birisidir. Hızlı evrim yeteneği nedeniyle 7 genogrubu vardır ve bunlardan GI, GII ve GIV insan enfeksiyonları ile ilişkilidir. Sular HNoV için salgın aracı olarak tanımlamaktadır. Bu bilgiler ışığında, çalışmamızda, lokal kuyular ve derelerden alınan su numunelerinde özellikle insanlarda enfeksiyonları ile ilişkili HNoV genogrup (G)I, GII ve GIV varlığının gerçek zamanlı polimeraz zincir reaksiyonu (real-time PCR) ile tanımlanarak moleküler epidemiyolojik bir veri sağlanması amaçlanmıştır.

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  • 1. Atmar RL, (2010). Noroviruses – State of the Art. Food and environmental virology. 2(3), 117-126. doi:10.1007/ s12560-010-9038-1.
  • 2. Aw TG, Gin KY-H, Ean Oon LL, Chen EX, Woo CH, (2009). Prevalence and Genotypes of Human Noroviruses in Tropical Urban Surface Waters and Clinical Samples in Singapore. Applied and Environmental Microbiology. 75(15), 4984-4992. doi:10.1128/AEM.00489-09.
  • 3. Da Silva AK, Le Saux J-C, Parnaudeau S, Pommepuy M, Elimelech M, Le Guyader FS, (2007). Evaluation of Removal of Noroviruses during Wastewater Treatment, Using Real-Time Reverse Transcription-PCR: Different Behaviors of Genogroups I and II. Applied and Environmental Microbiology. 73(24), 7891-7897. doi:10.1128/AEM.01428-07.
  • 4. Delgado-Gardea MCE, Tamez-Guerra P, Gomez-Flores R, Mendieta-Mendoza A, Zavala-Díaz de la Serna FJ, Contreras-Cordero JF, Erosa-de la Vega G, Pérez-Recoder MC, Sánchez-Ramírez B, González-Horta C, Infante- Ramírez R, (2017). Prevalence of Rotavirus Genogroup A and Norovirus Genogroup II in Bassaseachic Falls National Park Surface Waters in Chihuahua, Mexico. International Journal of Environmental Research and Public Health.14(5), 482. doi:10.3390/ijerph14050482.
  • 5. Huang X-Y, Su J, Lu Q-C, Li SZ, Zhao JY, Li ML, Li Y, Shen X-J, Zhang B-F, Wang H-F, Mu Y-J, Wu S-Y, Du Y-H, Liu L-C, Chen W-J, Klena JD, Xu B-L, (2017). A large outbreak of acute gastroenteritis caused by the human norovirus GII.17 strain at a university in Henan Province, China. Infectious Diseases of Poverty. 6, 6. doi:10.1186/ s40249-017-0236-z.
  • 6. Jalava K, Rintala H, Ollgren J, Maunula L, Gomez-Alvarez V, Revez J, Palander M, Antikainen J, Kauppinen A, Räsänen P, Siponen S, Nyholm O, Kyyhkynen A, Hakkarainen S, Merentie J, Pärnänen M, Loginov R, Ryu H, Kuusi M, Siitonen A, Miettinen I, Santo Domingo JW, Hänninen M-L & Pitkänen T, (2014). Novel Microbiological and Spatial Statistical Methods to Improve Strength of Epidemiological Evidence in a Community-Wide Waterborne Outbreak. PLoS ONE. 9(8), e104713. doi:10.1371/journal.pone.0104713.
  • 7. Joung HK, Han SH, Park S-J, Jheong WH, Ahn TS, Lee JB, Jeong Y-S, Jang KL, Lee G-C, Rhee O-J, Park J-W, Paik SY, (2013). Nationwide Surveillance for Pathogenic Microorganisms in Groundwater near Carcass Burials Constructed in South Korea in 2010. International Journal of Environmental Research and Public Health. 10(12), 7126-7143. doi:10.3390/ijerph10127126.
  • 8. Kaplan JE, Goodman RA, Schonberger LB, Lippy EC, Gary GW, (1982). Gastroenteritis due to Norwalk virus: an outbreak associated with a municipal water system. J Infect Dis. 146(2), 190-197.
  • 9. Kauppinen A, Miettinen IT, (2017). Persistence of Norovirus GII Genome in Drinking Water and Wastewater at Different Temperatures. Pathogens. 6(4), 48. doi:10.3390/ pathogens6040048.
  • 10. Kazama S, Miura T, Masago Y, Konta Y, Tohma K, Manaka T, Liu X, Nakayama D, Tanno T, Saito M, Oshitani H, Omura T, (2017). Environmental Surveillance of Norovirus Genogroups I and II for Sensitive Detection of Epidemic Variants. Applied and Environmental Microbiology. 83(9), e03406-16. doi:10.1128/AEM.03406-16.
  • 11. Kim MS, Koo ES, Choi YS, Kim JY, Yoo CH, Yoon HJ, Kim T-O, Choi HB, Kim JH, Choi JD, Park K-S, Shin Y, Kim Y-M, Ko GP, Jeong YS, (2016). Distribution of Human Norovirus in the Coastal Waters of South Korea. PLoS ONE. 11(9),e0163800. doi:10.1371/journal.pone.0163800.
  • 12. Koo ES, Kim MS, Choi YS, Park K-S, Jeong YS. (2017). Occurrence of novel GII.17 and GII.21 norovirus variants in the coastal environment of South Korea in 2015. PLoS ONE. 12(2), e0172237. doi:10.1371/journal.pone.0172237.
  • 13. Lee B-R, Lee S-G, Park J-H, Kim KY, Ryu SR, Rhee OJ, Park J-W, Lee J-S, Paik S-Y, (2013). Norovirus Contamination Levels in Ground Water Treatment Systems Used for Food-Catering Facilities in South Korea. Viruses. 5(7), 1646-1654. doi:10.3390/v5071646.
  • 14. Lodder WJ, de Roda Husman AM, (2005). Presence of Noroviruses and Other Enteric Viruses in Sewage and Surface Waters in The Netherlands. Applied and Environmental Microbiology. 71(3), 1453-1461. doi:10.1128/AEM.71.3.1453-1461.2005.
  • 15. Masago Y, Konta Y, Kazama S, Inaba M, Imagawa T, Tohma K, Saito M, Suzuki A, Oshitani H, Omura T, (2016). Comparative Evaluation of Real-Time PCR Methods for Human Noroviruses in Wastewater and Human Stool. PLoS ONE. 11(8), e0160825. doi:10.1371/journal.pone.0160825.
  • 16. Miura T, Parnaudeau S, Grodzki M, Okabe S, Atmar RL, Le Guyader FS (2013). Environmental Detection of Genogroup I, II, and IV Noroviruses by Using a Generic Real-Time Reverse Transcription-PCR Assay. Applied and Environmental Microbiology. 79(21), 6585-6592. doi:10.1128/AEM.02112-13.
  • 17. Pouillot R, Van Doren JM, Woods J, Plante D, Smith M, Goblick G, Roberts C, Locas A, Hajen W, Stobo J, (2015). Meta-Analysis of the Reduction of Norovirus and Male- Specific Coliphage Concentrations in Wastewater Treatment Plants. Applied and Environmental Microbiology. 81(14), 4669-4681. doi:10.1128/AEM.00509-15.
  • 18. Schultz AC, Perelle S, Di Pasquale S, Kovac K, De Medici D, Fach P, Sommer HM, Hoorfar J, (2011). Collaborative validation of a rapid method for efficient virus concentration in bottled water. Int J Food Microbiol. 1;145 Suppl 1:S158- 66. doi: 10.1016/j.ijfoodmicro.2010.07.030.
  • 19. Siqueira JAM, Bandeira R da S, Oliveira D de S, dos Santos LFP, Gabbay YB (2017). Genotype diversity and molecular evolution of noroviruses: A 30-year (1982- 2011) comprehensive study with children from Northern Brazil. PLoS ONE. 12(6), e0178909. doi:10.1371/journal. pone.0178909.
  • 20. Timurkan MÖ, Aydin H, Aktaş O, (2017). Frequency and molecular characterization of human norovirus in Erzurum, Turkey. Turk J Med Sci. 12;47(3), 960-966. doi: 10.3906/sag-1509-87.
  • 21. Vantarakis A, Mellou K, Spala G, Kokkinos P, Alamanos Y, (2011). A Gastroenteritis Outbreak Caused by Noroviruses in Greece. International Journal of Environmental Research and Public Health. 2011;8(8), 3468-3478. doi:10.3390/ ijerph8083468.
Etlik Veteriner Mikrobiyoloji Dergisi-Cover
  • ISSN: 1016-3573
  • Yayın Aralığı: Yılda 2 Sayı
  • Başlangıç: 1960
  • Yayıncı: Veteriner Kontrol Merkez Araştırma Enstitüsü Müdürlüğü
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